BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G14210.1
Length=1483
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478836 jgi|Araly1|478836|fgenesh2_kg.3__1537__AT3G14210.1 1784 0.0
> Ahg478836 jgi|Araly1|478836|fgenesh2_kg.3__1537__AT3G14210.1
Length=1230
Score = 1784 bits (966), Expect = 0.0
Identities = 1126/1204 (94%), Gaps = 8/1204 (1%)
Strand=Plus/Plus
Query 13 TGAAGTTCACGACCAAACCAGTCTTACTCTCTCTTAACTAATAATATTGAGATGGCAGAC 72
|||||||||| ||| |||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 1 TGAAGTTCACCACCCGACCAGTCTTACTCTCTCTTAACAAATATTATTGAGATGGCAGAC 60
Query 73 AATTTGAATTTGGTGAGTGTTCTGGGAGTCTTATTGGTATTAACCATCTTCCATAATCCG 132
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AATTTTAATTTGGTGAGTGTTCTGGGAGTCTTATTGGTATTAACCATCTTCCATAATCCG 120
Query 133 ATCATCGTCTACGCCGGCGAGGGTGTTCCCAACGTAGCTTTGTTCACTTTCGGAGACTCT 192
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 121 ATCATGGTCTACGCCGGCGAGGGTGTTCCCAACGTAGCGTTGTTCACTTTCGGAGACTCT 180
Query 193 TACTACGACGCCGGAAACAAAGTGTTTCTCAGCCAAAGGAAAGATCTTCCACAAACCTAT 252
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 181 TACTACGACGCCGGAAACAAAGTGTTTCTCAGCCAAAGAAAAGATCTTCCACAAATCTAT 240
Query 253 TGGCCCTACGGAAAATCCCGCGACTACCCCAACGGCAAGTTTTCCGACGGCCACATCGTC 312
||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 241 TGGCCTTACGGAAAATCCCGCGACTACCCTAATGGCAAGTTTTCCGACGGCCACATCGTT 300
Query 313 CCCGACTTCATCGCTGATTTCATCTCTATTCCGAATGGAGTACTCCCACCGGTGCTTAAA 372
||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 301 CCCGATTTTATCGCTGATTTCATCTCTATTCCGAATGGAGTACTCCCACCGGCACTTAAA 360
Query 373 CCGGGCGTTGATATTTCACGTGGAGTCAGCTTTGCCGTCGCCGATGCTTCTATTCTCGGA 432
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 361 CCGGGTGTTGATATTTCACGTGGAGTCAGCTTAGCCGTCGCCGATGCTTCTATTCTCGGA 420
Query 433 GCGCCGGTTGAATCTATGACACTAAATCAACAGGTGGTTAAATTCAAAAATATGAAATCG 492
|| || | |||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 421 GCTCCAGCTGAATCTATGACACTAAATCAACAAGTGGTTAAATTCAAAACTATGAAATCT 480
Query 493 AATTGGAACGACAGCTACATCGAGAAATCACTGTTTATGATATACATTGGTACGGAAGAT 552
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 481 AATTGGAACGACAGCTACATCGGGAAATCACTGTTTATGATATACATTGGTACGGAAGAT 540
Query 553 TATTTGAATTTCACCAAGGCCAACCCCAATGCAGACGCTTCTGCTCAGCAAGCTTTTGTC 612
|||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 541 TATTTGAATTTCACCAAGGCCAACCCCACGGCAGACGCTTCTGCTCAACAAGCTTTTGTC 600
Query 613 ACTAACGTTATTAACCGATTAAAGAACGACATCAAATTGTTGTACTCTTTGGGAGCGAGT 672
||| ||||| ||||| |||||||||||||||| |||||| |||||| |||||||||
Sbjct 601 ACTTCCGTTACTAACCAATTAAAGAACGACATCGGTTTGTTGCACTCTTGGGGAGCGAGG 660
Query 673 AAATTCGTGGTTCAATTGCTAGCACCATTGGGATGCTTACCGATCGTGAGACAAGAATAC 732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AAATTCGTGGTTCAATTGCTAGCACCATTGGGATGCTTACCGATCGTGAGACAAGAATAC 720
Query 733 AAAACCGGCAACGAGTGTTACGAGCTGCTCAATGATTTGGCCAAACAACATAACGGAAAA 792
|||||||||||||| ||||| |||| |||||||||||||||||||||||| |||| ||||
Sbjct 721 AAAACCGGCAACGACTGTTATGAGCCGCTCAATGATTTGGCCAAACAACACAACGAAAAA 780
Query 793 ATCGGTCCAATGTTAAACGAATTTGCTAAAAT-TAGTACTAGCCCCTATGGTTTTCAGTT 851
||||| ||||||||||||| |||||||||| | ||||||||||||| |||||||||||||
Sbjct 781 ATCGGCCCAATGTTAAACGCATTTGCTAAA-TCTAGTACTAGCCCCAATGGTTTTCAGTT 839
Query 852 CACCGTCTTCGATTTCTACAACGCCGTTCTTCGTAGGATTGCGACAGGAAGAAGTCTTAA 911
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 840 CACCGTCTTCGATTTCTACAACGCCGTTCTTCGTAGGATTACGACAGGAAGAAGTCTTAA 899
Query 912 CTACAGATTCTTCGTAACGAATACTTCGTGTTGCGGTGTTGGGACACACAATGCATATGG 971
||||||||| | | |||||||| | || ||||||||||||||||| ||||||||||||||
Sbjct 900 CTACAGATTGTACATAACGAATTCGTCCTGTTGCGGTGTTGGGACGCACAATGCATATGG 959
Query 972 TTGCGGAAAGGGAAACGTGCACTCGAAGCTATGTGAGTACCAAAGATCTTACTTCTTCTT 1031
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 TTGCGGAATGGGAAACGTGCACTCGAAGCTATGTGAGTACCAAAGATCTTACTTCTTCTT 1019
Query 1032 CGATGGACGTCACAACACAGAGAAGGCTCAGGAGGAAATGGCTCATCTTCTATATGGAGC 1091
|||||||||||||||| ||||||||| ||||||| || | ||||||||||||||||||||
Sbjct 1020 CGATGGACGTCACAACTCAGAGAAGGTTCAGGAGCAATTTGCTCATCTTCTATATGGAGC 1079
Query 1092 CGACCCT-GACGTGGTCCAGCCAATGACGGTCCGTGAGCTAATCGTCTACCCAACTGGAG 1150
||||||| | ||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1080 CGACCCTAG-CGTTGTCCAGCCAATGACGGTCCGTGAGCTAATCGTCTACCCAACCGGAG 1138
Query 1151 AAACTATGCGTGAGTATTGGGAACCCAACAA--CTTGGCTATCCGTCGTCGGCCGTCTCG 1208
| ||||||||||||||||||||||| ||||| ||| |||| |||||||| || ||| |
Sbjct 1139 AGACTATGCGTGAGTATTGGGAACCTAACAAGTCTT--CTATTCGTCGTCGTCCATCTGG 1196
Query 1209 TGAC 1212
||||
Sbjct 1197 TGAC 1200
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55497486965
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5