BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G14230.1 Length=1644 Score E Sequences producing significant alignments: (Bits) Value Ahg929203 jgi|Araly1|929203|scaffold_301660.1 1825 0.0 Ahg923954 jgi|Araly1|923954|scaffold_105235.1 111 1e-23 > Ahg929203 jgi|Araly1|929203|scaffold_301660.1 Length=1423 Score = 1825 bits (988), Expect = 0.0 Identities = 1308/1451 (90%), Gaps = 68/1451 (5%) Strand=Plus/Plus Query 127 TGAAGCCACCATGTGTGGAGGAGCTATAATCTCCGATTTCATACCTCCGCCGAGGTCCCT 186 |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| Sbjct 11 TGAAGCCACCATGTGTGGAGGAGCTATAATCTCCGATTTCATTCCGCCGCCGAGGTCCCT 70 Query 187 CCGCGTCACTAACGAGTTTATCTGGCCGGATCTGAAAAACAAAGTG---AAAGCTTCAAA 243 ||| ||||||| |||||||||||||||||||||||||||||||| | |||||||| || Sbjct 71 CCGTGTCACTAGCGAGTTTATCTGGCCGGATCTGAAAAACAAAGGGAAAAAAGCTTCGAA 130 Query 244 GAAGAGATCGAATAAGCGATCCGATTTCTTCGATCTTGACGATGATTTCGAAGCTGATTT 303 ||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||| Sbjct 131 GAAGAGATCGAATAAGCGACCCGATTTCTTCGATCTGGACGATGAATTCGAAGCTGATTT 190 Query 304 CCAAGGGTTTAAGGATGACTCGGCTTTTGACTGCGAAGACG--AT-GATGA---TGTCTT 357 || ||||||||||||||||||||||||||||||||||||| || ||||| |||||| Sbjct 191 CCGGGGGTTTAAGGATGACTCGGCTTTTGACTGCGAAGACGAAATCGATGATGGTGTCTT 250 Query 358 CGTCAATGTTAAGCCTTTCGTCTTCACCGCAACTACTAAGCCCGTAGCTTCCGCTTTCGT 417 ||||||||| |||||||| |||||||||||||||||||| |||||||||| | || | || Sbjct 251 CGTCAATGTGAAGCCTTTTGTCTTCACCGCAACTACTAAACCCGTAGCTT-C-CTCT-GT 307 Query 418 CTCC--ACTGGTATATATTTGGTAGGTTCAGCATATGCCAAGAAAACTGTAGAGTCCGCT 475 | || | | || | | ||||| ||||||| ||||||||||||||||||||||| | Sbjct 308 CCCCGTTTTCGCATCCA-CT-GTAGGATCAGCATCTGCCAAGAAAACTGTAGAGTCCGAT 365 Query 476 GAGCAAGCTGAGAAATCTTCTAAGAGGAAGAGGAAGAATCAATACCGAGGGATTAGGCAG 535 | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 366 GGGCAAGCTGAGAAATCTTCTAAGAGGAAGAGGAAGAATCAATACCGAGGAATTAGGCAG 425 Query 536 CGTCCTTGGGGAAAATGGGCTGCGGAGATCCGTGATCCGAGAAAAGGCTCCCGAGAATGG 595 || || ||||| ||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 426 CGCCCCTGGGGCAAATGGGCTGCTGAGATCCGTGATCCGAGAAAAGGCTCCCGAGAATGG 485 Query 596 CTTGGAACATTCGACACTGCTGAGGAAGCAGCAAGAGCTTATGATGCTGCAGCACGCAGA 655 |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct 486 CTTGGAACATTCGACACTGCTGAGGAAGCAGCAAGAGCTTATGACGCAGCAGCACGCAGA 545 Query 656 ATCCGTGGCACGAAAGCTAAGGTGAATTTTCCC-GAGGAGAAGAACCCTAGCGTCGTATC 714 ||||| |||||||||||||||||||| |||||| ||||||||||||||| | ||| || Sbjct 546 ATCCGAGGCACGAAAGCTAAGGTGAA-TTTCCCAGAGGAGAAGAACCCT-TC--CGTCTC 601 Query 715 CCAGAAACGTCCTAGTGCTAAGACTAATAATCTTCAGAAATCAGTGGCTAAACCAAACAA 774 |||||||||||||| || |||||| ||||||||||||||| ||||||||||||||||||| Sbjct 602 CCAGAAACGTCCTACTGGTAAGACCAATAATCTTCAGAAACCAGTGGCTAAACCAAACAA 661 Query 775 AAGCGTAACTTTGGTTCAGCAGCCAACACATCTGAGTCAGCAGTACTGCAACAACTCCTT 834 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 662 AAGCGTAACTTTGGTTCAGCAGCCAACACATCTGAGTCAGCAGTACTGCAACAACTCCTT 721 Query 835 TG---AC-------A--ACTCTTTTGGTGATATGAGTTTCATGGAAGAGAAGCCTCAGAT 882 || || | |||| |||||||||||||||||||||||||||||||||||||| Sbjct 722 TGATAACATGGGGAATGACTCCTTTGGTGATATGAGTTTCATGGAAGAGAAGCCTCAGAT 781 Query 883 GTACAACAATCAGTTTGGGTTAACAAACTCGTTCGATGCTGGA-GGTAACAATGGATACC 941 ||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||| || Sbjct 782 GTACAACAATCAGTTTGGGTTAACAAACTCGTTCGATGC-GGAAGGTAATAATGGATTCC 840 Query 942 AGTATTTCAGTTCCGATCAGGGCAGTAACTCCTTCGACTGTTCTGAGTTCGGGTGGAGTG 1001 |||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||| Sbjct 841 AGTATTTCAGTTCCGATCAGGGAAGTAACTCATTCGACTGCTCTGAGTTCGGGTGGAGTG 900 Query 1002 ATCACGGCCCTAAAACACCCGAGATCTCTTCAATGCTTGTCAATAACAACGAAGCATCAT 1061 |||||||||| |||||||| |||||||||||||||||||||||||||||| ||||| ||| Sbjct 901 ATCACGGCCCCAAAACACCTGAGATCTCTTCAATGCTTGTCAATAACAACCAAGCACCAT 960 Query 1062 TTGTTGAAGAAACCAATGCAGCCAAGAAGCTCAAACCAAACTCTGATGAGTCAGACGATC 1121 | |||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||| Sbjct 961 TCGTTGAAGAAACCAATGCAGCAAAGAAGCTCAAACCCAACTCTGATGATTCAGACGATC 1020 Query 1122 TGATGGCATACCTTGACAACGCCTTGTGGGACACCCCACTAGAAGTGGAAGCCATGCTTG 1181 ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| Sbjct 1021 TGATGGCATACCTTGACAACGCCTTATGGGACACTCCACTAGAAGTGGAAGCCATGCTTG 1080 Query 1182 GCGCAGATGCTGGTGCTGTGACTCAGGAAGAGGAAAACCCAGTGGA-GCTATGGAGCTTA 1240 | ||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||| Sbjct 1081 GTGCAGATGCTGGTGCTGTGACTCAGGAAGAGGAAAACCCAATGGACG-TATGGAGCTTA 1139 Query 1241 GATGAGATCAATTTCATGCTGGAAGGAGACTTTTGAAGTGATCGATGGTTCCTTAGTTTG 1300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1140 GATGAGATCAATTTCATGCTGGAAGGAGACTTTTGAAGTGATCGATGGTTCCTTAGCTTG 1199 Query 1301 TAAATAAAGCTGTGT-T-GGATTTTGCTGTTGGGGGATGGTACAAGTCACACCTCAAGCT 1358 ||||||||||||||| | ||||| |||||||||||| ||||||||||||||| | ||||| Sbjct 1200 TAAATAAAGCTGTGTGTTGGATTCTGCTGTTGGGGGGTGGTACAAGTCACACTTGAAGCT 1259 Query 1359 C-TATGCATTGGTATCTCATGAGCCTCTCTTCCATAGAGAGTTTCTCTTTTAATTTTGTC 1417 | | ||||||||| | || | | || ||| | |||||||||||||||| Sbjct 1260 CGT-TGCATTGGT-T-TC-T-----T-------AT-GAG--TCTCTCTTTTAATTTTGTT 1300 Query 1418 GAAATAAAAAAGGTGTGATGAAGTAAATAGAGGTATAATAATATCTATCTATTAAGTCTT 1477 |||||||||| ||||||||||||||||||||||| ||||| | ||||||| | |||||| Sbjct 1301 GAAATAAAAA-GGTGTGATGAAGTAAATAGAGGTGTAATA-T--CTATCTAATGAGTCTT 1356 Query 1478 GTTTTGTTCTTTCATTTTTGTATTTCTTTTCTATTTAAAAGACAGTTTATT-AGTCTTCT 1536 |||| ||| || |||| || ||||||| ||||||||||||||||||||| | |||||| Sbjct 1357 GTTTCCTTCATT--TTTT-GTTTTTCTTT-CTATTTAAAAGACAGTTTATTTAATCTTCT 1412 Query 1537 GAGCTCTCTTT 1547 ||||| ||||| Sbjct 1413 GAGCTATCTTT 1423 > Ahg923954 jgi|Araly1|923954|scaffold_105235.1 Length=1078 Score = 111 bits (60), Expect = 1e-23 Identities = 81/91 (89%), Gaps = 1/91 (1%) Strand=Plus/Plus Query 136 CATGTGTGGAGGAGCTATAATCTCCGATTTCATACCTCCGCCGAGGTCCCTCCGCGTCAC 195 ||||||||||||||||||||||||||||||||| || ||||||||||| | ||| || || Sbjct 20 CATGTGTGGAGGAGCTATAATCTCCGATTTCATTCCACCGCCGAGGTCTCGCCGTGTTAC 79 Query 196 TAACGAGTTTATCTGGCCGGATCTGAA-AAA 225 | ||||||||| |||||||||||||| ||| Sbjct 80 CAGCGAGTTTATTTGGCCGGATCTGAAGAAA 110 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 61630016410 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5