BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G14290.1 Length=1031 Score E Sequences producing significant alignments: (Bits) Value Ahg478846 jgi|Araly1|478846|fgenesh2_kg.3__1547__AT3G14290.1 1459 0.0 Ahg474517 jgi|Araly1|474517|fgenesh2_kg.1__4471__AT1G53850.2 869 0.0 > Ahg478846 jgi|Araly1|478846|fgenesh2_kg.3__1547__AT3G14290.1 Length=913 Score = 1459 bits (790), Expect = 0.0 Identities = 876/917 (96%), Gaps = 7/917 (1%) Strand=Plus/Plus Query 76 ACATTGAGGTTTATCTCAGATCGAAATCGAGAAGAAGATGTTTCTCACTAGGACTGAGTA 135 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ACATTGAGGTTTATTTCAGATCGAAATCGAGAAGAAGATGTTTCTCACTAGGACTGAGTA 60 Query 136 TGACAGAGGAGTCAATACATTTTCTCCTGAAGGTCGTCTCTTTCAGGTTGAGTATGCCAT 195 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TGACAGAGGAGTCAATACCTTTTCTCCTGAAGGTCGTCTCTTTCAGGTTGAGTATGCCAT 120 Query 196 TGAAGCTATCAAGCTTGGTTCTACTGCTATTGGTGTAAAGACGAAAGAGGGAGTTGTTCT 255 ||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| Sbjct 121 TGAGGCTATCAAGCTTGGTTCTACTGCTATTGGCGTAAAGACGAAAGAGGGGGTTGTTCT 180 Query 256 TGCAGTCGAGAAGCGTATTACTTCGCCTTTACTGGAGCCGAGTAGTGTTGAGAAGATTAT 315 |||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||| Sbjct 181 TGCAGTCGAGAAGCGTATTACTTCGCCTTTGCTGGAACCGAGCAGTGTTGAGAAGATTAT 240 Query 316 GGAAATTGATGACCATATAGGTTGTGCTATGAGTGGTCTGATTGCTGACGCGCGAACACT 375 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 241 GGAAATTGATGACCATATAGGTTGTGCCATGAGTGGTCTGATTGCTGACGCGCGAACACT 300 Query 376 TGTTGAGCATGCACGAGTAGAGACCCAGAACCACAGGTTCTCGTATGGTGAGCCAATGAC 435 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 301 TGTTGAGCATGCACGAGTAGAGACCCAAAACCACAGGTTCTCGTATGGTGAGCCAATGAC 360 Query 436 TGTAGAATCTACAACACAAGCTTTGTGTGATCTTGCTTTACGGTTTGGTGAAGGAGAGGA 495 ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || Sbjct 361 TGTAGAATCTACAACACAAGCGTTGTGTGATCTTGCTTTACGGTTTGGTGAAGGAGATGA 420 Query 496 AGAGTCAATGTCTCGTCCATTTGGAGTATCCCTTCTCATTGCTGGGCATGATGAAAATGG 555 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 421 AGAGTCAATGTCTCGTCCATTTGGAGTATCCCTTCTCATTGCCGGGCATGATGAAAATGG 480 Query 556 ACCGAGCCTGTACTACACAGATCCATCGGGAACATTCTGGCAATGCAATGCAAAGGCAAT 615 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 481 ACCGAGCCTGTACTACACAGATCCATCGGGAACATTCTGGCAATGCAACGCAAAGGCAAT 540 Query 616 TGGGTCTGGCTCAGAAGGAGCTGATAGTTCTCTCCAAGAGCAATTCAACAAGGATATAAC 675 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 TGGGTCAGGCTCAGAAGGAGCTGATAGTTCTCTCCAAGAGCAATTCAACAAGGATATAAC 600 Query 676 TCTTCAAGAAGCTGAAACAATAGCTGTATCTATCCTAAAGCAAGTAATGGAAGAAAAGGT 735 ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| Sbjct 601 TCTTCAAGAAGCTGAAACAATCGCTGTATCTATCCTTAAGCAAGTAATGGAAGAAAAGGT 660 Query 736 GACTCCAAACAATGTCGACATTGCCAAAGTCGCACCAGCTTATCACCTCTACACTCCTCA 795 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 GACTCCAAACAATGTCGACATTGCCAAAGTCGCACCAGCTTATCACCTCTACACTCCTCA 720 Query 796 GGAGGTTGAAGCCGTCATCAGTCGTCTATGAAGAAATAAACCGCCATTCTCTTCCTGTTA 855 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 721 GGAGGTTGAAGCCGTCATCAGTCGTCTATGAAGAAATAAACCGACATTCTCTTCCTGTTA 780 Query 856 TCTTACCTTGTCTGTTCGGTAATTTATCAGGCTTCTGTCTGCTTCCGGTTCTCTAAACCA 915 |||||||| ||||||| ||||||||||||||||| || ||||||||||| ||||||||| Sbjct 781 TCTTACCTGGTCTGTTGGGTAATTTATCAGGCTTG-GTATGCTTCCGGTTATCTAAACCA 839 Query 916 AAAA--TTAGTTTCGTTTAATCAG-ATAATGGATTTTATCGAGTTGAGTTTTATTGAGCT 972 || | || |||| ||| | | ||| || |||||||||||||||||||||||| Sbjct 840 AAGACCTTC-TTTCACA-AATG-GCACAATTAATCCTATCGAGTTGAGTTTTATTGAGCT 896 Query 973 TTCTATCTACAtttttt 989 ||||||||||||||||| Sbjct 897 TTCTATCTACATTTTTT 913 > Ahg474517 jgi|Araly1|474517|fgenesh2_kg.1__4471__AT1G53850.2 Length=974 Score = 869 bits (470), Expect = 0.0 Identities = 640/724 (88%), Gaps = 4/724 (1%) Strand=Plus/Plus Query 105 AGAAGAAGATGTTTCTCACTAGGACTGAGTATGACAGAGGAGTCAATACATTTTCTCCTG 164 |||||||||||||||||||||| ||||||||||||||||||||||| || |||||||| | Sbjct 71 AGAAGAAGATGTTTCTCACTAGAACTGAGTATGACAGAGGAGTCAACACTTTTTCTCCAG 130 Query 165 AAGGTCGTCTCTTTCAGGTTGAGTATGCCATTGAAGCTATCAAGCTTGGTTCTACTGCTA 224 |||| | || ||||| || || ||||||||||||||||||||||||||||||||||| | Sbjct 131 AAGGAAGGCTGTTTCAAGTGGAATATGCCATTGAAGCTATCAAGCTTGGTTCTACTGCAA 190 Query 225 TTGGTGTAAAGACGAAAGAGGGAGTTGTTCTTGCAGTCGAGAAGCGTATTACTTCGCCTT 284 |||| |||||||| ||||| |||||||| || || || ||||||||||| |||||||| | Sbjct 191 TTGGAGTAAAGACAAAAGAAGGAGTTGTGCTCGCTGTTGAGAAGCGTATCACTTCGCCAT 250 Query 285 TACTGGAGCCGAGTAGTGTTGAGAAGATTATGGAAATTGATGACCATATAGGTTGTGCTA 344 | ||||| ||||| ||||| ||||||||||||||||||||||||||||| |||||||||| Sbjct 251 TGCTGGAACCGAGCAGTGTGGAGAAGATTATGGAAATTGATGACCATATTGGTTGTGCTA 310 Query 345 TGAGTGGTCTGATTGCTGACGCGCGAACACTTGTTGAGCATGC-ACGAGTAGAGACCCAG 403 |||| ||| | |||||||| ||||||||||||||||||||||| | |||| ||||| || Sbjct 311 TGAGCGGTTTAATTGCTGATGCGCGAACACTTGTTGAGCATGCTA-GAGTTGAGACTCAA 369 Query 404 AACCACAGGTTCTCGTATGGTGAGCCAATGACTGTAGAATCTACAACACAAGCTTTGTGT 463 ||||| || |||||||| |||||||| ||||||||||| || ||||||||||| ||||| Sbjct 370 AACCATAGATTCTCGTACGGTGAGCCGATGACTGTAGAGTCCACAACACAAGCGCTGTGT 429 Query 464 GATCTTGCTTTACGGTTTGGTGAAGGAGAGGAAGAGTCAATGTCTCGTCCATTTGGAGTA 523 ||||| |||||||| |||||||||||||| ||||| |||||||||||||||||||||||| Sbjct 430 GATCTGGCTTTACGATTTGGTGAAGGAGATGAAGAATCAATGTCTCGTCCATTTGGAGTA 489 Query 524 TCCCTTCTCATTGCTGGGCATGATGAAAATGGACCGAGCCTGTACTACACAGATCCATCG 583 || |||||||||||||| ||||||||||| ||||| ||| |||||||||||||||| || Sbjct 490 TCACTTCTCATTGCTGGTCATGATGAAAACGGACCAAGCTTGTACTACACAGATCCTTCA 549 Query 584 GGAACATTCTGGCAATGCAATGCAAAGGCAATTGGGTCTGGCTCAGAAGGAGCTGATAGT 643 |||||||||||||| |||||||||||||||||||| || || ||||||||||||||||| Sbjct 550 GGAACATTCTGGCAGTGCAATGCAAAGGCAATTGGTTCAGGGTCAGAAGGAGCTGATAGC 609 Query 644 TCTCTCCAAGAGCAATTCAACAAGGATATAACTCTTCAAGAAGCTGAAACAATAGCTGTA 703 ||||| ||||||||||| ||||| ||| | |||| ||||||||||| || || |||||| Sbjct 610 TCTCTTCAAGAGCAATTTAACAAAGATTTGTCTCTACAAGAAGCTGAGACTATCGCTGTA 669 Query 704 TCTATCCTAAAGCAAGTAATGGAAGAAAAGGTGACTCCAAACAATGTCGACATTGCCAAA 763 |||||||| |||||||| ||||||||||||||||||||||| ||||| || |||||||| Sbjct 670 TCTATCCTCAAGCAAGTTATGGAAGAAAAGGTGACTCCAAATAATGTGGATATTGCCAAG 729 Query 764 GTCGCACCAGCTTATCACCTCTACACTCCTCAGGAGGTTGAAGCCGTCATCAG-TCGTCT 822 || |||||||||||||| ||||||||||| || || || ||||| |||||| | |||||| Sbjct 730 GTAGCACCAGCTTATCATCTCTACACTCCCCAAGAAGTCGAAGCAGTCATC-GCTCGTCT 788 Query 823 ATGA 826 |||| Sbjct 789 ATGA 792 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 38351654502 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5