BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G14310.1
Length=2115
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478847 jgi|Araly1|478847|fgenesh2_kg.3__1548__AT3G14310.1 3064 0.0
Ahg923946 jgi|Araly1|923946|scaffold_105227.1 898 0.0
> Ahg478847 jgi|Araly1|478847|fgenesh2_kg.3__1548__AT3G14310.1
Length=2074
Score = 3064 bits (1659), Expect = 0.0
Identities = 1977/2122 (93%), Gaps = 56/2122 (3%)
Strand=Plus/Plus
Query 1 ATCATCACTCACTAGTGTCGAACAATGGCACCATCAATGAAAGAAATTTTTTCTAAAGAT 60
|||||||||||| |||||| ||||||||||||||||||||||||||| ||||| | ||
Sbjct 1 ATCATCACTCACCAGTGTCAAACAATGGCACCATCAATGAAAGAAATCTTTTC--CA-AT 57
Query 61 AATTTCAAGAAAAACAAGAAACTTGTTTTGCTATCCGCCGCCGTAGCTTTGCTCTTCGTA 120
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 58 AATTTCAAGAAAAACAAGAAACTTATTTTGCTATCCGCCGCCGTAGCTTTGCTCCTCGTA 117
Query 121 GCCGCCGTCGCCGGAATCTCTGCCGGAGCTTCAAAAGCCAACGAAAAACGAACTCTATCC 180
|||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 118 GCCGCCGTCGCCGGAATCTCCGCCGGAGCTTCAAAATCCAACGAAAAACGAACTCTATCC 177
Query 181 CCGTCGTCTCACGCCGTGCTAAGATCCTCATGCAGCTCCACGCGTTACCCTGAGCTCTGT 240
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 178 CCGTCGTCTCACGCCGTGCTAAGATCCTCCTGCAGCTCCACGCGTTACCCTGAGCTCTGT 237
Query 241 ATCTCTGCCGTGGTAACTGCCGGCGGCGTCGAGCTAACGTCGCAAAAAGATGTCATCGAG 300
||||| ||||||| || | ||||||||||||||||||||||||||||||| |||||||||
Sbjct 238 ATCTCCGCCGTGGCAAATACCGGCGGCGTCGAGCTAACGTCGCAAAAAGACGTCATCGAG 297
Query 301 GCATCGGTGAACCTAACAATAACCGCCGTGGAGCACAATTACTTCACCGTGAAGAAGCTG 360
|||||| ||||||| ||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 298 GCATCGCTGAACCTTACAATAATCGCCGTGGAGCACAATTACTTCAACGTGAAGAAGCTG 357
Query 361 ATCAAGAAGAGGAAAGGACTGACGCCGCGCGAGAAGACGGCGCTTCATGACTGTTTGGAG 420
||||||||||| |||||||| ||||||||||| ||||| |||||||||||||||||||||
Sbjct 358 ATCAAGAAGAGAAAAGGACTAACGCCGCGCGAAAAGACAGCGCTTCATGACTGTTTGGAG 417
Query 421 ACTATTGATGAGACGCTGGACGAGCTCCATGAAACGGTGGAAGATCTCCATTTGTATCCA 480
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 418 ACTATTGACGAGACGCTGGACGAGCTCCATGAAACGGTGGAAGATCTACATTTGTATCCA 477
Query 481 ACCaaaaaaaCTCTCCGGGAACACGCCGGAGATCTCAAAACACTAATTAGCTCCGCCATT 540
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 478 ACCAAAAAAACTCTCCGGGAACACGCCGGAGATCTCAAAACCCTAATCAGCTCCGCCATT 537
Query 541 ACCAACCAGGAGACTTGTCTCGACGGCTTCTCTCATGACGACGCCGATAAGCAAGTTCGT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 ACCAACCAGGAGACTTGTCTCGACGGCTTCTCTCATGACGACGCCGATAAGCAAGTTCGT 597
Query 601 AAAGCCTTGTTGAAGGGGCAGATACACGTAGAGCACATGTGCAGCAACGCTCTAGCAATG 660
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 AAAGCCTTGTTGAAGGGTCAGATACACGTAGAGCACATGTGCAGCAACGCTCTAGCAATG 657
Query 661 ATCAAGAACATGACTGATACTGACATAGCCAACTTCGAGCAAAAAGCTAAAATAACCTCA 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 ATCAAGAACATGACTGATACTGACATAGCCAACTTCGAGCAAAAAGCTAAAATAACCTCA 717
Query 721 AACAACCGTAAGCTCAAGGAGGAGAATCAGGAAACTACGGTGGCTGTAGATATCGCCGGA 780
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 718 AACAACCGTAAGCTCAAGGAGGAGAATCAGGAAACTACGGTGGC---AGATATCGCCGGA 774
Query 781 GCCGGAGAACTAGACTCGGAGGGATGGCCAACTTGGTTATCCGCTGGAGATAGGAGGCTT 840
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 GCGGGAGAACTAGACTCGGAGGGATGGCCAACTTGGTTATCCGCTGGAGATAGGAGGCTT 834
Query 841 CTTCAGGGTTCAG-GTGTGAAAGCTGACGCCACCGTGGCAGCTGACGGTAGCGGTACATT 899
||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 835 CTTCAGGGTTC-GAGTGTGAAAGCCGACGCCACCGTGGCAGCTGACGGTAGCGGTACATT 893
Query 900 TAAAACTGTGGCTGCTGCGGTTGCCGCGGCCCCTGAAAATAGTAATAAGAGGTATGTGAT 959
||| || ||||| ||||||||||| |||||||| ||||||||||| ||||||||||||||
Sbjct 894 TAAGACGGTGGCGGCTGCGGTTGCGGCGGCCCCGGAAAATAGTAACAAGAGGTATGTGAT 953
Query 960 ACATATAAAAGCCGGAGTTTACAGAGAGAATGTGGAGGTTGCTAAGAAGAAAAAGAATAT 1019
|||||| |||||||| ||||| |||||||||||||| ||||| |||||||||||||||||
Sbjct 954 ACATATTAAAGCCGGGGTTTATAGAGAGAATGTGGATGTTGCAAAGAAGAAAAAGAATAT 1013
Query 1020 AATGTTTATGGGAGATGGTCGGACGAGAACTATTATCACCGGAAGTCGAAACGTTGTAGA 1079
||||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||
Sbjct 1014 AATGTTTATGGGAGATGGTCGGACGAGAACTGTTATCACCGGAAGTCGAAACGTCGTCGA 1073
Query 1080 CGGTAGCACCACTTTCCACTCCGCCACCGTTGCTGCTGTCGGCGAGAGATTCTTAGCTCG 1139
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1074 CGGTAGCACCACTTTCCAGTCCGCCACCGTTGCTGCTGTCGGCGAGAGATTCTTAGCTCG 1133
Query 1140 TGACATCACTTTCCAAAACACGGCGGGTCCGTCGAAGCACCAAGCGGTGGCTCTCCGTGT 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1134 TGACATCACTTTCCAAAACACGGCGGGTCCGTCGAAGCACCAAGCGGTGGCTCTCCGTGT 1193
Query 1200 GGGTTCTGATTTCTCCGCCTTCTACAATTGCGACATGTTAGCTTATCAAGACACTCTATA 1259
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1194 GGGTTCTGATTTCTCCGCCTTCTACAATTGCGACATGTTAGCTTACCAAGACACTCTTTA 1253
Query 1260 CGTCCACTCTAACCGTCAATTCTTCGTCAAATGTCTCATCGCCGGAACCGTTGACTTCAT 1319
|||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||
Sbjct 1254 CGTCCACTCTAACCGTCAATTCTTCGTCAAGTGTATCATCGCCGGAACCGTCGACTTCAT 1313
Query 1320 CTTCGGAAACGCCGCCGTCGTGCTCCAAGACTGTGACATCCACGCTCGCCGCCCTAATTC 1379
|||||| |||||||||||||||||||||||||||||||| |||||||||||||| || ||
Sbjct 1314 CTTCGGGAACGCCGCCGTCGTGCTCCAAGACTGTGACATTCACGCTCGCCGCCCCAACTC 1373
Query 1380 CGGTCAGAAAAACATGGTCACAGCTCAGGGAAGAACGGATCCTAACCAGAACACAGGGAT 1439
||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1374 CGGCCAGAAAAACATGGTCACGGCTCAGGGAAGAACGGATCCAAACCAGAACACAGGGAT 1433
Query 1440 CGTTATCCAGAAATGTAGGATCGGTGCCACGTCGGATTTACAGTCGGTGAAAGGTAGTTT 1499
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1434 CGTTATCCAGAAATGTAGGATCGGTGCCACGTCAGATTTACAGTCAGTGAAAGGTAGTTT 1493
Query 1500 TCCGACGTAC-TTGGGTCGGCCATGGAAGGAATATTCACAAACGGTGATAATGCAGTCGG 1558
|| |||||| |||| |||||| |||||||| ||||| ||||||||||||||||||||||
Sbjct 1494 CCCTACGTACCTTGG-TCGGCCGTGGAAGGAGTATTCGCAAACGGTGATAATGCAGTCGG 1552
Query 1559 CTATCTCCGACGTGATCCGACCCGAAGGGTGGTCCGAGTGGACCGGGACTTTTGCGTTGA 1618
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1553 CTATCTCCGACGTGATCCGACCCGAAGGGTGGTCTGAGTGGACCGGGACTTTTGCGTTGA 1612
Query 1619 ACACTCTGACTTACAGAGAGTATTCGAACACAGGAGCAGGGGCTGGAACTGCAAATAGAG 1678
||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 1613 ACACTCTGACTTATAGAGAGTATGCGAATACAGGAGCAGGGGCTGGAACTGCAAATAGAG 1672
Query 1679 TGAAGTGGAGGGGCTTTAAGGTAATTACGGCTGCTGCTGAAGCTCAAAAATATACGGCTG 1738
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1673 TGAAGTGGAGGGGCTTTAAAGTAATTACGGCTGCTGCTGAAGCTCAAAAATATACGGCTG 1732
Query 1739 GTCAGTTTATTGGTGGTGGAGGCTGGTTATCGTCGACCGGTTTCCCCTTCTCGCTCGGTC 1798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1733 GTCAGTTTATTGGTGGTGGAGGCTGGTTATCGTCGACCGGTTTCCCCTTCTCGCTCGGTC 1792
Query 1799 TTTGAGAGATTGTTGT-GT--AATGTGTTCCTACGTATTGTTGGCTACAAAAATTATTGA 1855
|||||||||||||||| || ||||||||||||||||||||||| | | ||||
Sbjct 1793 TTTGAGAGATTGTTGTTGTGTAATGTGTTCCTACGTATTGTTGG--A------T-ATTG- 1842
Query 1856 TTAATATTGTATGAAGCAAATCGTGTTGTCCTCTTTGTTTTGTTT-GGGTTGTGTACTTT 1914
| | | | || ||||||||||||| ||||||||||||||| |||||||||| |||
Sbjct 1843 T-A-T---GAAT----CAAATCGTGTTGTTCTCTTTGTTTTGTTTTGGGTTGTGTA-TTT 1892
Query 1915 CTCTAGATCATCGTAGTATTAGAAACGAGATGAAATAATGCGGGTTTTTGCGCCTTGAGA 1974
||||| | ||||||||||||||||| ||||||||||| | || ||||| ||||||||||
Sbjct 1893 CTCTA--T-ATCGTAGTATTAGAAACTAGATGAAATAACGAGGATTTTTTCGCCTTGAGA 1949
Query 1975 ATATGGATTTGAGAAAGGAGGGATGTTGCCTATTTGATGATGATGCATGATGGATGTCAT 2034
|| ||| | | | ||| || ||| || ||||| | ||| |||||||
Sbjct 1950 GGAT--ATT-GCCTATCT-G--ATGATG---ATT-GACGATGA---A--ATG-ATGTCAT 1993
Query 2035 AATaaaaaa-caaaccaaaaaCATGTATTTTCT-TGTAACTTCTCTCTCTTTTTGTTGTC 2092
||||||||| |||| |||| |||||||||| || |||||||||||| |||||||||||||
Sbjct 1994 AATAAAAAAACAAAACAAATACATGTATTT-CTATGTAACTTCTCTTTCTTTTTGTTGTC 2052
Query 2093 AACGAAACTTATGTCCATATAT 2114
||||||| ||||||||||||||
Sbjct 2053 AACGAAATTTATGTCCATATAT 2074
> Ahg923946 jgi|Araly1|923946|scaffold_105227.1
Length=1801
Score = 898 bits (486), Expect = 0.0
Identities = 845/1017 (83%), Gaps = 30/1017 (3%)
Strand=Plus/Plus
Query 802 GGATGGCCAACT-TGGTTATCCGCT-GGAGATAGGAGGCTTCTTC-AGGGTTC-AGGTGT 857
|||||||||| | |||||||| | | |||||||| |||||||||| |||| || | | |
Sbjct 780 GGATGGCCAA-TGTGGTTATCAG-TCGGAGATAGAAGGCTTCTTCAAGGG-TCAACG-AT 835
Query 858 GAAAGCTGACGCCACCGTGGCAGCTGACGGTAGCGGT-ACATTTAAAACTGTGGCTGCTG 916
||||| ||||| || || || |||||||| |||||| || |||| || || || || |
Sbjct 836 CAAAGCAGACGCTACGGTAGCGGCTGACGGAAGCGGTGAC-TTTACGACGGTAGCGGCGG 894
Query 917 CGGTTGCCGCGGCCCCTGAAAATAGTAATAAGAGGTATGTGATACATATAAAAGCCGGAG 976
| || || ||||| || || || ||||| ||||||| ||||||||||||||| || ||||
Sbjct 895 CTGTAGCTGCGGCGCCAGAGAAGAGTAACAAGAGGTTTGTGATACATATAAAGGCAGGAG 954
Query 977 TTTACAGAGAGAATGTGGAGGTTG-CTAAGAAGAAAAAGAATATAATGTTTATGGGAGAT 1035
|||| |||||||||||||| | || | |||||||| ||||||||||||||| ||||||||
Sbjct 955 TTTATAGAGAGAATGTGGAAG-TGACGAAGAAGAAGAAGAATATAATGTTTTTGGGAGAT 1013
Query 1036 GGTCGGACG-AGAACTATTATCACCGGAAGTCGAAACGTTGTAGACGGTAGCACCACTTT 1094
|||| | | | ||||||||||||||||||| |||| ||||| ||||| |||||||||||
Sbjct 1014 GGTC-AAGGAAAAACTATTATCACCGGAAGTAGAAATGTTGTCGACGGAAGCACCACTTT 1072
Query 1095 CCACTCCGCCACCGTTGCTGCTGTCGGCGAGAGA-TTCTTAGCTCGTGACATCACTTTCC 1153
||| ||||| || |||||||| |||||||||| | ||| |||| ||||||||||| ||||
Sbjct 1073 CCAATCCGCTACTGTTGCTGCCGTCGGCGAGA-ATTTCCTAGCGCGTGACATCACATTCC 1131
Query 1154 AAAACACGGCGGGTCCGTCGAAGCACCAAGCGGTGGCTCTCCGTG-TGGGTTCTGATTTC 1212
|||||||||||||||| || ||||| ||||||||||||||||| | |||| || |||||
Sbjct 1132 AAAACACGGCGGGTCCCTCAAAGCATCAAGCGGTGGCTCTCCGAGTTGGG-TCGGATTTT 1190
Query 1213 TCCGCCTTCTACAATTGCGACATGTTAGCTTATCAAGACACTCTATACGTCCACTCTAAC 1272
||||| || ||| | ||||||||||| ||||| ||||| || || |||||||| || ||
Sbjct 1191 TCCGCTTTTTACCAGTGCGACATGTTTGCTTACCAAGATACACTTTACGTCCATTCAAAT 1250
Query 1273 CGTCAATTCTTCGTCAAATGTCTCATCGCCGGAACCGTTGACTTCATCTTCGGAAACGCC 1332
||||||||||| || ||||||| ||| |||||||||| || ||||| |||||||||||
Sbjct 1251 CGTCAATTCTTTGTGAAATGTCACATTACCGGAACCGTCGATTTCATTTTCGGAAACGCA 1310
Query 1333 GCCGTC-GTGCTCCAAGACTGTGACATCCACGCTCGCCGCCCTAATTCCGGTCAGAAAAA 1391
|||| | || | ||||| || || || |||| ||||| || ||| |||||||||||||
Sbjct 1311 GCCG-CGGTTTTACAAGATTGCGATATTAACGCACGCCGACCAAATCCCGGTCAGAAAAA 1369
Query 1392 CATGGTCACAGCTCAGGGAAGAACGGATCCTAACCAGAACACAGGGATCGTTATCCAGAA 1451
|||||| |||||||| ||| | | ||||| || || ||||| ||||| || || |||||
Sbjct 1370 CATGGTTACAGCTCAAGGACGGTCTGATCCGAATCAAAACACGGGGATAGTGATTCAGAA 1429
Query 1452 ATGTAGGATCGGTGCCACGTCGGAT-TTACAGTCGGTGAAAGGTA-GTTTTCCGACGTA- 1508
||| |||| |||| |||||||||| || | | |||||||| | | |||||||||||
Sbjct 1430 TTGTCGGATTGGTGGCACGTCGGATCTT-TTGGCCGTGAAAGGAACG-TTTCCGACGTAT 1487
Query 1509 CTTGGGTCGGCCATGGAAGGAATATTCACAAACGGTGATAATGCAGTCGGCTATCTCCGA 1568
||| ||||| ||||||||||| || |||| ||||||||||||||||||| ||| |||||
Sbjct 1488 CTT-GGTCGTCCATGGAAGGAGTACTCACGTACGGTGATAATGCAGTCGGATATATCCGA 1546
Query 1569 CGTGATCCGACCCGAAGGGTGGTC-CGAGTGGACCGGGACTTTTGCGTTGAACACTCTGA 1627
|||||||||||||||||| ||| | ||||||| ||||| |||||||||| |||||||||
Sbjct 1547 CGTGATCCGACCCGAAGGATGG-CTTGAGTGGAGCGGGAGTTTTGCGTTGGACACTCTGA 1605
Query 1628 CTTACAGAGAGTATTCGAACACAGGAGCAGGGGCTGGAACTGCAAATAGAGTGAAGTGGA 1687
|||| |||||||||| ||| | ||||| |||||| ||||||||||||||||||| |||||
Sbjct 1606 CTTATAGAGAGTATTTGAATAGAGGAGGAGGGGCAGGAACTGCAAATAGAGTGACGTGGA 1665
Query 1688 GGGGCTTTAAGGTAATTAC-GGCTGCTGCTGAAGCTCAAAAATATACGGCTGGTCAGTTT 1746
|||||||||||||||||| | || | | |||||||| ||| ||||||||||||||||
Sbjct 1666 AGGGCTTTAAGGTAATTACAAG-TGATACAGAAGCTCAGCAATTTACGGCTGGTCAGTTT 1724
Query 1747 ATTGGTGGTGGAGGCTGGTTATCGTCGACCGGTTTCCCCTTCTCGCTCGGTCTTTGA 1803
|||||||||||||||||||| ||||||||||||| || |||||| | ||||||||
Sbjct 1725 ATTGGTGGTGGAGGCTGGTTGGCGTCGACCGGTTTTCCTTTCTCGTTAAGTCTTTGA 1781
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79570521805
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5