BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G14400.1
Length=2712
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478859 jgi|Araly1|478859|fgenesh2_kg.3__1560__AT3G14400.1 3552 0.0
Ahg944742 jgi|Araly1|944742|scaffold_700971.1 364 1e-99
Ahg899802 jgi|Araly1|899802|Al_scaffold_0004_452 361 2e-98
Ahg900002 jgi|Araly1|900002|Al_scaffold_0004_652 311 2e-83
> Ahg478859 jgi|Araly1|478859|fgenesh2_kg.3__1560__AT3G14400.1
Length=2596
Score = 3552 bits (1923), Expect = 0.0
Identities = 2223/2361 (94%), Gaps = 47/2361 (2%)
Strand=Plus/Plus
Query 1 ATCGCGAAGGGATTGTGGGGTTTGTTGCTGGGCGGGTCTCTTCCCTCGGCAGTTACCTTC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 ATCGCGAAGGGATTGTGGGGTTTGTTGCTGGGCGGGTCTCTTCCCTCGGCAGTTACC-T- 58
Query 61 ATCGAATTCGATCTTCATCTTCTTCCTTCCCCAACTCTTTCAAATTCGTGAAAATCTTCC 120
|| | |||| | || | | || ||| ||| | ||||||||||
Sbjct 59 -TC--A-TCGA-----A---------TT---CGA-TC-TTC---TTCTTCAAAATCTTCC 92
Query 121 TTTAATTTCGACTACAAATTGATTG-GAGGAAGCCCCCAAAA-CGTGAATTAGAAGAGAA 178
||||||||||||| ||||||| || || |||| |||||||| |||||||||||||||||
Sbjct 93 ATTAATTTCGACTAGAAATTGA-TGCGAAGAAG-CCCCAAAACCGTGAATTAGAAGAGAA 150
Query 179 AGAG-AAAAGCGAGGAAAACGCGTGGTGACAAAAGATGCGATCGCAGCTGTTGGCTTGGC 237
|||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 151 AGAGAAAAAGCTCGGAAAACGCGTGGTGGCAAAAGATGCGATCGCAGCTGTTGGCTTGGC 210
Query 238 CGCGGCGGCGAGTCAGCGATGAGCGGTTGCTTGGTTGGTTTTCTCCGGCGGAGAATAACC 297
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 211 CGCGGCGGCGAGTCAGCGATGAGCGGTTGCTTCGTTGGTTTTCTCCGGCGGAGAATAACC 270
Query 298 GATTTTGAATGGGATTTAAACTGCAGATGAGCTGGATGCCGAGTCTACTGAGTCAAAAGC 357
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 271 GATTCTGAATGGGATTTAAACTGCAGATGAGCTGGATGCCGAGTCTACTGAGTCAGAAGC 330
Query 358 GTAGGAATGGTCCTCCCTTAGGGTTACGGAATCTCGGCAACACCTGTTACCTCAATAGTG 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 331 GTAGGAATGGTCCTCCCTTAGGGTTACGGAATCTCGGCAACACCTGTTACCTCAATAGTG 390
Query 418 TCCTTCAGTGTCTCACTTTCACTCCTCCTCTCGCTAATTTCTGCCTTACTCACAAACACT 477
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 391 TCCTTCAGTGTCTCACTTTCACTCCTCCTCTCGCTAATTTCTGCCTCACTCACAAACACT 450
Query 478 CCTCTCACTGCGACACATATGTGGATGGAGAGAGGAAAAGGGATTGTCCATTTTGCATAG 537
|||||||||||||| ||||||||||||| ||| ||||| |||||||||||||||||||||
Sbjct 451 CCTCTCACTGCGACTCATATGTGGATGGGGAGCGGAAACGGGATTGTCCATTTTGCATAG 510
Query 538 TTGAGAAAAGAATAGCAAGGTCTCTTAGTGTGGATCTAACTACCGATGCGCCTAACAAGA 597
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 511 TTGAGAAAAGAATAGCAAGGTCTCTTAGTGTGGATCTAACAACCGATGCGCCTAACAAGA 570
Query 598 TTTCAAGCTGTCTCAAAATTTTTGCTGAGCATTTTAAGCTTGGTCGTCAAGAGGATGCTC 657
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 571 TTTCAAGCTGTCTCAAAATTTTTGCTGAGCATTTTAAGCTTGGGCGTCAAGAGGATGCTC 630
Query 658 ATGAGTTCTTGCGCTATGTCATTGATGCATGCCACAATACGTCTCTCAGACTCAAGAAGT 717
||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 631 ATGAGTTCTTGCGGTATGTCATTGATGCATGCCACAATACGTCTCTCCGCCTCAAGAAGT 690
Query 718 TG-CGATACAACGGTAACGAGCCCTTTAATGGCAATAGTGTCGTGAAGGAGATTTTTGGT 776
|| ||| ||| ||||| ||||||||||||||||||| |||||| |||||||||||||||
Sbjct 691 TGAGGAT-CAAGGGTAATGAGCCCTTTAATGGCAATACTGTCGTCAAGGAGATTTTTGGT 749
Query 777 GGTGCTTTGCAGAGCCAGGTCAAGTGTTTGTCTTGTGGTGCGGAGTCTAATAAAGCCGAT 836
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 750 GGTGCTTTGCAGAGCCAGGTCAAGTGTTTGTCATGTGGTGCCGAGTCTAATAAAGCCGAT 809
Query 837 GAGATTATGGATATCAGTCTTGAGATTTTGCAGAGTAGCTCTGTGAAGGAGTCAT-TGCA 895
||||||||||||||||||||||| |||||||| ||||||||| | |||||||| | ||||
Sbjct 810 GAGATTATGGATATCAGTCTTGAAATTTTGCATAGTAGCTCTATCAAGGAGTC-TATGCA 868
Query 896 AAAGTTCTTTCAATCAGAGATTTTAGATGGCAACAATAAGTATAGATGCGAGTCCTGTGA 955
|||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 869 AAAGTTTTTTCAATCAGAGATTTTAGATGGCAACAATAAGTATAAATGCGAGACCTGTGA 928
Query 956 AAAACTGGTGACGGCGAGGAAGCAGATGTCTATACTGCAAGCGCCTAATATCCTTGTTAT 1015
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 929 AAAACTGGTGACGGCGAGGAAGCAGATGTCTATACTCCAAGCGCCTAATATCCTTGTTAT 988
Query 1016 CCAATTGAAAAGGTTTGGGGGCATTTTTGGTGGGAAGATTGATAAAGCCATTTCATTTGG 1075
||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 989 CCAATTGAAAAGGTTTGGGGGTATTTTTGGTGGGAAGATTGATAAAACCATTTCATTTGG 1048
Query 1076 TGAGATTCTGGTTCTCTCGAACTTCATGAGTAAAGCAAGCAAGGACCCTCAACCGGAATA 1135
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1049 TGAGATTCTGGTTCTCTCGAACTTCATGAGTAAGGCAAGCAAGGACCCTCAACCGGAATA 1108
Query 1136 CAAGCTCTTTGGGATAATTGTGCACTCAGGATTTTCTCCTGAATCTGGGCACTATTATGC 1195
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1109 CAAGCTTTTTGGGATAATTGTGCACTCAGGATTTTCTCCTGAATCTGGGCACTATTATGC 1168
Query 1196 ATACGTTAAGGATTCCTTGGGTCGATGGTATTGCTGCAATGATTCGTTTGTCTCGCTCTC 1255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1169 ATACGTTAAGGATTCCTTGGGTCGATGGTATTGCTGCAATGATTCGTTTGTCTCGCTCTC 1228
Query 1256 CACCTTGCAGGAGGTTTTATCAGAGAAAGCTTATATCCTGTTTTTCAGCCGTTCAAACCA 1315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1229 CACCTTGCAGGAGGTTTTATCAGAGAAAGCTTATATCCTGTTTTTCAGCCGTTCAAACCA 1288
Query 1316 GAGGCCAGCGTCTGCTAAAACTCTGGTAACATCCAATGGGACTACATCTCATGAAGTTAA 1375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1289 GAGGCCAGCGTCTGCTAAAACTCTGGTAACATCCAATGGGACTACATCTCATGAAGTTAA 1348
Query 1376 TGGCTGTGAGACATCAAATCCCCAGAAGTTTATTGGGCCCCTTAATGGTTTCAACATGAA 1435
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1349 TGGCTGTGAGACATCAAATCCCCAGAAGTTTATTGGGCCCCTTAATGGTGTCAACATGAA 1408
Query 1436 ACCTCAAGCCGAGCAGTCCTTCCAGAAGGGTAAC-CTGGCTTCTTCAAAGCCCCATAAAT 1494
||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||
Sbjct 1409 ACCTCAAGCCGAGCAGTCCTTCCAGAAGG-TAAAACTGACTTCTTCAAAGCCCCATAAAT 1467
Query 1495 TTATTAGGCCCAAACCACGAGCCGAGCAGGCCC-CACTAGAGGATAACCTGCTTTCTTCC 1553
||||| ||||||||| ||||||||||||||||| | | ||||||||||||||||||||||
Sbjct 1468 TTATTGGGCCCAAACTACGAGCCGAGCAGGCCCTC-CAAGAGGATAACCTGCTTTCTTCC 1526
Query 1554 AAAGTTGAAAAGGCGCCTTTAAGGCCACATGCGAAAGTCAGTATATCTGTCAACCTTGGT 1613
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 1527 AAAGTTGAAAAGGCGCCTTTAAAGCCACATGCGAAAGTCATTATATCTGTCAACCTTGGT 1586
Query 1614 GCCAAAAGGGTCTCTCCT---GTCAATGGTAGACTTTCTTTCCACCAAGATGAGAACATA 1670
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1587 GCCAAAAGGGTCTCTCCTTCTGTCAATGGTAGACTTTCTTTCCACCAAGATGAGAACATA 1646
Query 1671 GCTCCAAAGGCAAACAAAGAGAATAGTGTATCAGTTTTGCCGACTAAAGTTAACTCTGGT 1730
||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 1647 GCTCCAAAGGCGAACAAAGAGAATAGTGTATCAGTTTTGCCGACTAGAGTTAAGTCTGGC 1706
Query 1731 ACGGAGAGAAAGTTTGGTACTGAAAATGGTGGCAATGGAGTTAAAGAAAACGGCAGTGCA 1790
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1707 ACGGAGAGAAAGTTTGGTACTGAAAATGGTGGCAATGGAGTTAAAGAAAACGGCAGTGCA 1766
Query 1791 CCAGGTAGTAGTAATCATAAAGTGGCATTGCATCCTCATGAGCGGAGTAATGGCTCCAGC 1850
|||||||||||||| ||||||||| |||||||||| |||||||| |||||||||||||||
Sbjct 1767 CCAGGTAGTAGTAAACATAAAGTGACATTGCATCCCCATGAGCGTAGTAATGGCTCCAGC 1826
Query 1851 AATGGGGGTGATCACCACAAGGATAACTTACATCCATGTGGAAGTAATGGCTCACAAAAT 1910
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1827 AATGGGGGTGATCACCACAAGGATAACTTACATCCATGTGGAAGTAATGGCTCACAAAAT 1886
Query 1911 GGAACTGCTCACCCCGAAACTGAGAGGAACGGTGTTAGTACCACCCAATCCAAAGGCTTG 1970
||||||| ||||| |||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 1887 GGAACTGTTCACCAGGAAATTGAGAGAAACGGTGTTAGTACCACCCAATCCAAAGGCTTG 1946
Query 1971 TGTTCTTCAACAAAGGAAGACCCCTGCATTTTGCTGAGAAAAGACGAATCATCTCGGAAT 2030
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1947 TGTTCTTCAACAAATGAAGACCCCTGCATTTTGCTTAGAAAAGACGAATCATCTCGGAAT 2006
Query 2031 GAACTTGAAGCAATAAAAGAGAGCCTGAAAAAAGACGCGCTGTCACATCTACGTTCATGC 2090
|||||||||||||| |||||||||||||| ||||| ||| ||||||||||||| ||||||
Sbjct 2007 GAACTTGAAGCAATCAAAGAGAGCCTGAAGAAAGATGCGTTGTCACATCTACGGTCATGC 2066
Query 2091 GGATGGTATGACAAGGTTCTCATCTCCATGCATGCCAAGAAGAGATTGCGTACAGAGCAA 2150
||||||||||||||||| | |||||| |||| |||||||||||||||||||||||||||
Sbjct 2067 GGATGGTATGACAAGGTACACATCTCTATGCGGGCCAAGAAGAGATTGCGTACAGAGCAA 2126
Query 2151 TCAGGTGGAGAAGATGGT-AGCGACTTGAAAAGGAGGTTGATTGAAGATGTGAAATCAAG 2209
||||| |||||||||||| | ||||||||| ||| ||||||||||||||||||||||||
Sbjct 2127 TCAGGAGGAGAAGATGGTGA-CGACTTGAAGAGGTTGTTGATTGAAGATGTGAAATCAAG 2185
Query 2210 TTTGAAATCACAGATTCCAGAGGAGTTGAAAGCAGATCTGGTAAATCGTATCTGGGAGAT 2269
||| ||||| |||||||||||||| |||||||||||||||||||| ||||| ||||| ||
Sbjct 2186 TTTAAAATCGCAGATTCCAGAGGAATTGAAAGCAGATCTGGTAAACCGTATATGGGAAAT 2245
Query 2270 TAGCAAGAAGAAGTACTCGTGAACCATTGTTTTTTGCTTCAACAAAAATGACTCGAATCT 2329
||||||||||||||||||||||||| |||||||| |||| ||| |||||||||| |||||
Sbjct 2246 TAGCAAGAAGAAGTACTCGTGAACCGTTGTTTTT-GCTTAAACCAAAATGACTCAAATCT 2304
Query 2330 CTGGAAGCATGAAGCCTCTAC 2350
|||| || ||||||||||||
Sbjct 2305 CTGGGTGCTTGAAGCCTCTAC 2325
Score = 348 bits (188), Expect = 1e-94
Identities = 237/259 (92%), Gaps = 9/259 (3%)
Strand=Plus/Plus
Query 2419 TTATACAGAGTGAGCGGATCGAGATTTTTTCCTGCGACTGTGATGATGGTGAAGTGAGtt 2478
|||||||||| ||||||||| | |||||||||||| ||||||| | |||||||||||||
Sbjct 2344 TTATACAGAGAGAGCGGATCAACATTTTTTCCTGCCACTGTGA-G--GGTGAAGTGAGTT 2400
Query 2479 tttttCTTTTCTATTATTATTACATTTTTGGAAGAGAGTAAAAGTAATTACCGGaaaaaa 2538
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2401 TTTTTCTTTTCTATTATTATTACATTTTTGG--GAGAGTAAAAGTAATTACCGGAAAAAG 2458
Query 2539 aaagaaaaaaaaaaCAGATCTCATTCTGTATAATATAACGCCTTCTTGTT-TTTTGCCTC 2597
||| |||| |||||||||||||||||||||||||| || |||||||| || |||||||||
Sbjct 2459 AAA-AAAAGAAAAACAGATCTCATTCTGTATAATACAAAGCCTTCTTATTATTTTGCCTC 2517
Query 2598 TTATCGATGAAGCTTTACACAAATATACAA-GTCCTGT-GGAAATTTTTAGTATAAGAAC 2655
|||||||||||||||||||||||||||||| ||||| | ||||||| |||| |||||||
Sbjct 2518 TTATCGATGAAGCTTTACACAAATATACAAAGTCCTTTTGGAAATTAATAGTGTAAGAAC 2577
Query 2656 GTTCTTGAATTTGTGTATT 2674
|||||||||||||||||||
Sbjct 2578 GTTCTTGAATTTGTGTATT 2596
> Ahg944742 jgi|Araly1|944742|scaffold_700971.1
Length=624
Score = 364 bits (197), Expect = 1e-99
Identities = 250/275 (91%), Gaps = 5/275 (2%)
Strand=Plus/Plus
Query 755 TGTCGTGAAGGAGATTTTTGGTGGTGCTTTGCAGAGCCAGGTCAAGTGTTTGTCTTGTGG 814
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 262 TGTCGTCAAGGAGATTTTTGGTGGTGCTTTGCAGAGCCAGGTCAAGTGTTTGTCATGTGG 321
Query 815 TGCGGAGTCTAATAAAGCCGATGAGATTATGGATATCAGTCTTGAGATTTTGCAGAGTAG 874
||| ||||| |||| |||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 322 TGCCGAGTCAAATACAGCCGATGAGATTATGGATATCAGTCTTGAAATTTTGCATAGTAT 381
Query 875 CTCTGTGAAGGAGTC-ATTGCAAAAGTTCTTTCAATCAGAGATTTTAGATGGCAACAATA 933
|||| | |||||||| || |||||| |||||||||||||||||||||||||||||||
Sbjct 382 CTCTATCAAGGAGTCTAT-GCAAAAAAAATTTCAATCAGAGATTTTAGATGGCAACAATA 440
Query 934 AGTATAGATGCGAGTCCTGTGAAAAACTGGTGACGGCGAGGAAGCAGATGTC-T--ATAC 990
|||||| ||||||| ||||||| ||||||||||||||||||||||||||||| | ||||
Sbjct 441 AGTATAAATGCGAGACCTGTGATAAACTGGTGACGGCGAGGAAGCAGATGTCGTCTATAC 500
Query 991 TGCAAGCGCCTAATATCCTTGTTATCCAATTGAAA 1025
| ||| ||||||||||||||||||||||||||||
Sbjct 501 TCCAAATGCCTAATATCCTTGTTATCCAATTGAAA 535
> Ahg899802 jgi|Araly1|899802|Al_scaffold_0004_452
Length=480
Score = 361 bits (195), Expect = 2e-98
Identities = 250/276 (91%), Gaps = 5/276 (2%)
Strand=Plus/Plus
Query 755 TGTCGTGAAGGAGATTTTTGGTGGTGCTTTGCAGAGCCAGGTCAAGTGTTTGTCTTGTGG 814
|||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 159 TGTCGTCAAGGAGATTTTTGGTGGTGCTTTGCAGAGCCAGATCAAGTGTTTGTCATGTGG 218
Query 815 TGCGGAGTCTAATAAAGCCGATGAGATTATGGATATCAGTCTTGAGATTTTGCAGAGTAG 874
||| ||||| |||| |||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 219 TGCCGAGTCAAATACAGCCGATGAGATTATGGATATCAGTCTTGAAATTTTGCATAGTAT 278
Query 875 CTCTGTGAAGGAGTCAT-TGCAAAAGTTCTTTCAATCAGAGATTTTAGATGGCAACAATA 933
|||| | |||||||| | ||||||| |||||||||||||||||||||||||||||||
Sbjct 279 CTCTATCAAGGAGTC-TATGCAAAAAAAATTTCAATCAGAGATTTTAGATGGCAACAATA 337
Query 934 AGTATAGATGCGAGTCCTGTGAAAAACTGGTGACGGCGAGGAAGCAGATGTC-T--ATAC 990
|||||| ||||||| ||||||| ||||||||||||||||||||||||||||| | ||||
Sbjct 338 AGTATATATGCGAGACCTGTGATAAACTGGTGACGGCGAGGAAGCAGATGTCGTCTATAC 397
Query 991 TGCAAGCGCCTAATATCCTTGTTATCCAATTGAAAA 1026
| ||| |||||||||||||||||||||||||||||
Sbjct 398 TCCAAATGCCTAATATCCTTGTTATCCAATTGAAAA 433
> Ahg900002 jgi|Araly1|900002|Al_scaffold_0004_652
Length=309
Score = 311 bits (168), Expect = 2e-83
Identities = 219/243 (90%), Gaps = 5/243 (2%)
Strand=Plus/Plus
Query 787 AGAGCCAGGTCAAGTGTTTGTCTTGTGGTGCGGAGTCTAATAAAGCCGATGAGATTATGG 846
|||||||||||||||||||||| |||||||| ||||| |||| |||||||||||||||||
Sbjct 68 AGAGCCAGGTCAAGTGTTTGTCATGTGGTGCCGAGTCAAATACAGCCGATGAGATTATGG 127
Query 847 ATATCAGTCTTGAGATTTTGCAGAGTAGCTCTGTGAAGGAGTCAT-TGCAAAAGTTCTTT 905
||||||||||||| |||||||| |||| |||| | |||||||| | ||||||| |||
Sbjct 128 ATATCAGTCTTGAAATTTTGCATAGTATCTCTATCAAGGAGTC-TATGCAAAAAAAATTT 186
Query 906 CAATCAGAGATTTTAGATGGCAACAATAAGTATAGATGCGAGTCCTGTGAAAAACTGGTG 965
|||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||
Sbjct 187 CAATCAGAGATTTTAGATGGCAACAATAAGTATAAATGCGAGACCTGTGATAAACTGGTG 246
Query 966 ACGGCGAGGAAGCAGATGTC-T--ATACTGCAAGCGCCTAATATCCTTGTTATCCAATTG 1022
|||||||||||||||||||| | ||||| ||| |||||||||||||||||||||||||
Sbjct 247 ACGGCGAGGAAGCAGATGTCGTCTATACTCCAAATGCCTAATATCCTTGTTATCCAATTG 306
Query 1023 AAA 1025
|||
Sbjct 307 AAA 309
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102310398070
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5