BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G14560.1 Length=1088 Score E Sequences producing significant alignments: (Bits) Value Ahg929238 jgi|Araly1|929238|scaffold_301695.1 828 0.0 > Ahg929238 jgi|Araly1|929238|scaffold_301695.1 Length=505 Score = 828 bits (448), Expect = 0.0 Identities = 486/505 (96%), Gaps = 0/505 (0%) Strand=Plus/Plus Query 277 CTCTTTCTCTCTTCTCACAAATGGCGTCTACGCAATATGGTTTTGAACATCAAGGCGGCA 336 |||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||| Sbjct 1 CTCTTTCTCTCTTCTCACAAATGGCGTCTACGCAATATGGGTTTGATCATCAAAGCGGCG 60 Query 337 TGGAGATTATCAACGATGAGCTTATCTTGTCGTTTTTGGAAGAAGAATCGCCCGTCGAAA 396 ||||| |||||||||| ||||||||| |||||||||||||||||||||| |||||||||| Sbjct 61 TGGAGGTTATCAACGACGAGCTTATCATGTCGTTTTTGGAAGAAGAATCCCCCGTCGAAA 120 Query 397 ATCATAGTAGCATCAACAAAGAGGAAGAAGAGAAACTAAACCGTGTGATTAGGTCGCTAG 456 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 121 ATCATAGTAGCATCAACAAAGAGGAAGAAGAGAAACTAAACCGTGTGATTAGATCGCTAG 180 Query 457 AAGTGGAGATCAACATGAGTTCTCCAACCATAGAAGCTAGGAAAATGAATATGCAACAGA 516 ||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||| Sbjct 181 AAGTGGAGATCAACATGAGTTCTCCGACCATAGAAGCTAGGAAAATGGATCTGCAACAGA 240 Query 517 CGATATCCGGTCTTGAAGATGATTTTGGGTGGCTTAACGACTTTGATATTGGTATGATTT 576 ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 241 CGATAACCGGTCTTGAAGATGATTTCGGGTGGCTTAACGACTTTGATATTGGTATGATTT 300 Query 577 CGTTGCAAAATGATGATGAGATGATGAATTGGTGTACGGAACTTTCTTACATGGATGGTG 636 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 CGTTGCAAAATGATGATGAGATGATGAATTGGTGTACGGAACTTTCTTACATGGATGGTG 360 Query 637 TGGTAGATAGTGGTGTTCTTGAGATTGAAGGTGGTGATTATTATTCTCATATTAACTATG 696 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 TGGTAGATAGTAGTGTTCTTGAGATTGAAGGTGGTGATTATTATTCTCATATTAACTATG 420 Query 697 CACTCACATTTGAGGAACCAACTCTTTCTCTATGGCAAGAGAATAATGATGTAGTTATGT 756 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 GACTTACATTTGAGGAACCAACTCTTTCTCTATGGCAAGAGAATAATGATGTAGTTATGT 480 Query 757 ATTGATTGATTTCGTGAAGTCATAA 781 ||| || |||||||||||||||||| Sbjct 481 ATTAATCGATTTCGTGAAGTCATAA 505 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40524660771 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5