BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G14560.1

Length=1088
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg929238 jgi|Araly1|929238|scaffold_301695.1                        828    0.0  


> Ahg929238 jgi|Araly1|929238|scaffold_301695.1
Length=505

 Score =  828 bits (448),  Expect = 0.0
 Identities = 486/505 (96%), Gaps = 0/505 (0%)
 Strand=Plus/Plus

Query  277  CTCTTTCTCTCTTCTCACAAATGGCGTCTACGCAATATGGTTTTGAACATCAAGGCGGCA  336
            |||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||| 
Sbjct  1    CTCTTTCTCTCTTCTCACAAATGGCGTCTACGCAATATGGGTTTGATCATCAAAGCGGCG  60

Query  337  TGGAGATTATCAACGATGAGCTTATCTTGTCGTTTTTGGAAGAAGAATCGCCCGTCGAAA  396
            ||||| |||||||||| ||||||||| |||||||||||||||||||||| ||||||||||
Sbjct  61   TGGAGGTTATCAACGACGAGCTTATCATGTCGTTTTTGGAAGAAGAATCCCCCGTCGAAA  120

Query  397  ATCATAGTAGCATCAACAAAGAGGAAGAAGAGAAACTAAACCGTGTGATTAGGTCGCTAG  456
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  121  ATCATAGTAGCATCAACAAAGAGGAAGAAGAGAAACTAAACCGTGTGATTAGATCGCTAG  180

Query  457  AAGTGGAGATCAACATGAGTTCTCCAACCATAGAAGCTAGGAAAATGAATATGCAACAGA  516
            ||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||||
Sbjct  181  AAGTGGAGATCAACATGAGTTCTCCGACCATAGAAGCTAGGAAAATGGATCTGCAACAGA  240

Query  517  CGATATCCGGTCTTGAAGATGATTTTGGGTGGCTTAACGACTTTGATATTGGTATGATTT  576
            ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  241  CGATAACCGGTCTTGAAGATGATTTCGGGTGGCTTAACGACTTTGATATTGGTATGATTT  300

Query  577  CGTTGCAAAATGATGATGAGATGATGAATTGGTGTACGGAACTTTCTTACATGGATGGTG  636
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  CGTTGCAAAATGATGATGAGATGATGAATTGGTGTACGGAACTTTCTTACATGGATGGTG  360

Query  637  TGGTAGATAGTGGTGTTCTTGAGATTGAAGGTGGTGATTATTATTCTCATATTAACTATG  696
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  361  TGGTAGATAGTAGTGTTCTTGAGATTGAAGGTGGTGATTATTATTCTCATATTAACTATG  420

Query  697  CACTCACATTTGAGGAACCAACTCTTTCTCTATGGCAAGAGAATAATGATGTAGTTATGT  756
             ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  421  GACTTACATTTGAGGAACCAACTCTTTCTCTATGGCAAGAGAATAATGATGTAGTTATGT  480

Query  757  ATTGATTGATTTCGTGAAGTCATAA  781
            ||| || ||||||||||||||||||
Sbjct  481  ATTAATCGATTTCGTGAAGTCATAA  505



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 40524660771


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5