BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G14690.1
Length=1787
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478882 jgi|Araly1|478882|fgenesh2_kg.3__1583__AT3G14660.1 2220 0.0
Ahg952533 jgi|Araly1|952533|scaffold_85500001.1 390 2e-107
> Ahg478882 jgi|Araly1|478882|fgenesh2_kg.3__1583__AT3G14660.1
Length=1621
Score = 2220 bits (1202), Expect = 0.0
Identities = 1442/1560 (92%), Gaps = 8/1560 (1%)
Strand=Plus/Plus
Query 79 tctctGGGAGGAAAAATGGAGATATCGGTTGCATCGGTAACAATATCAGTAGTTCTAGCT 138
|||||||||| |||||||||||||||||||||||||||||| || ||||||| | |||||
Sbjct 1 TCTCTGGGAGAAAAAATGGAGATATCGGTTGCATCGGTAACCATTTCAGTAGCTATAGCT 60
Query 139 GTTGTGTCATGGTGGATATGGAGAACTTTACAGTGGGTTTGGTTTAAGCCAAAGATGCTT 198
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GTTGTGTCGTGGTGGATATGGAGAACTTTACAGTGGGTTTGGTTTAAGCCAAAGATGCTT 120
Query 199 GAGCA-TTACCTGAGAAGACAAGGTCTTGCCGGAACACCTTACACGCCTCTAGTCGGCGA 257
||| | ||||||||||||||||||||||| |||||| |||||||||||||| ||||||||
Sbjct 121 GAG-AGTTACCTGAGAAGACAAGGTCTTGTCGGAACTCCTTACACGCCTCTTGTCGGCGA 179
Query 258 TTTGAAGAAGAATTTCACCATGTTGTCGGAGGCAAGGTCCAAACCCCTCAAACTAACGGA 317
||| |||| |||||||| |||| || | |||||||| ||||||||| |||| ||||| ||
Sbjct 180 TTTAAAGAGGAATTTCAGCATGCTGGCTGAGGCAAGATCCAAACCCATCAATCTAACAGA 239
Query 318 TGACATCTCACCTCGTGTCGTGCCTTATCCCTTGCAAATGTTCAAGACTTACGGAAGGAC 377
||| ||| |||||||| ||||||||||||||||||||||||||||||||||||| || ||
Sbjct 240 TGATATCACACCTCGTATCGTGCCTTATCCCTTGCAAATGTTCAAGACTTACGGGAGAAC 299
Query 378 TTACTTTACATGGTTTGGACCTATCCCAACCATCACAATAATGGATCCTGAGCAAATCAA 437
|| || ||||||| ||||||| || ||||| ||||| |||||||||||||||||||||||
Sbjct 300 TTTCTATACATGGCTTGGACCCATACCAACAATCACCATAATGGATCCTGAGCAAATCAA 359
Query 438 GGAAGTGTTCAACAAAGTTTATGATTTCCA-AAAGCCGCATACATTTCCTTTGGCCACAA 496
|||||||||||||||||||||||||||||| ||| | ||||| || |||||||||| |
Sbjct 360 GGAAGTGTTCAACAAAGTTTATGATTTCCAGAAA-TCACATACGTTCCCTTTGGCCA-GA 417
Query 497 TT-ATAGCTAAAGGACTCGCTAATTATGATGGTGATAAATGGGCAAAACACCGAAGAATC 555
|| ||||| ||||||| || ||||||||||||||||||||| |||||||||||||||
Sbjct 418 TTAATAGCCGCTGGACTCGTTAGTTATGATGGTGATAAATGGGCGAAACACCGAAGAATC 477
Query 556 ATCAACCCGGCTTTTCATATAGAGAAGATCAAGAATATGGTACCTGCGTTCCACCAGAGC 615
|||||||| ||||| || | |||||||||||||||||||||||||||||||||| ||||
Sbjct 478 ATCAACCCAGCTTTCCACCTTGAGAAGATCAAGAATATGGTACCTGCGTTCCACCTGAGC 537
Query 616 TGTAGGGAAGTTGTTGGCGAATGGGATCAGTTAGTATCGGATAAAGGGTCGTCATGTGAG 675
||||| || ||||||||| |||||||| ||||||| ||||||||||| | ||||||||||
Sbjct 538 TGTAGCGAGGTTGTTGGCCAATGGGATAAGTTAGTGTCGGATAAAGGCTTGTCATGTGAG 597
Query 676 GTAGACGTTTGGCCTGGGCTTGTGAGTATGACTGCAGATGTGATCTCTCGTACTGCATTT 735
||||| |||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 598 GTAGATATTTGGCCTGGGCTTGTGAGTATGACTGCAGATGTGATCTCTCGTACAGCTTTT 657
Query 736 GGCAGCAGCTACAAAGAAGGGCAGAGGATATTTGAGCTCCAAGCAGAACTAGCACAGCTC 795
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 658 GGCAGCAGCTACAAAGAAGGGCAGAGGATCTTTGAGCTCCAAGCAGAACTAGCACAGCTC 717
Query 796 ATCATTCAAGCTTTTAGGAAAGCTTTCATCCCTGGATATAGTTATCTCCCAACAAAAAGT 855
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 718 ATCATTCAAGCTTTTAGGAAAGCTTTCATCCCTGGATTTAGTTATCTCCCAACAAAAGGT 777
Query 856 AACAGAAGAATGAAAGCAGCAGCCAGAGAAATCCAAGTTATACTAAGAGGGATCGTAAAC 915
|||||||||||||||||| ||| |||||||||||||||||||| ||||||||||| |||
Sbjct 778 AACAGAAGAATGAAAGCAAAAGCAAGAGAAATCCAAGTTATACTGAGAGGGATCGTTAAC 837
Query 916 AAAAGGTTAAGGGCCAGAGAAGCTGGTGAAGCACCAAGCGACGATTTGCTGGGAATACTT 975
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 838 AAAAGGTTAAGGGCCAGGGAAGCTGGGGAAGCACCAAGCGACGATTTGCTGGGAATACTT 897
Query 976 CTTGAATCGAATTTGAGGCAAACGGAAGGAAACGGAATGAGTACCGAGGATCTGATGGAG 1035
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 898 CTTGAATCAAATTTGAGGCAAACGGAAGGAAACGGAATGAGTACTGAGGATCTGATGGAG 957
Query 1036 GAGTGCAAGTTGTTCTATTTCGCCGGGCAAGAGACAACATCAGTACTTCTGGTTTGGACA 1095
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 958 GAGTGCAAGTTGTTCTATTTCGCCGGGCAAGAGACCACATCAGTACTTCTGGTTTGGACA 1017
Query 1096 ATGGTGCTGTTAAGCCAACACCAAGATTGGCAGGCTCGTGCACGAGAAGAAGTGAAGCAA 1155
||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 ATGATTCTGTTAAGTCAACACCAAGATTGGCAGGCTCGTGCACGAGAAGAAGTGAAGCAA 1077
Query 1156 GTGTTTGGCGATAAAGAACCTGATGCAGAAGGACTCAACCAGCTCAAAGTTATGACGATG 1215
|| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 1078 GTTTTTGGCGATAAAGAACCGGATGCAGAAGGACTCAACCAGCTCAAAGTTATGTCGATG 1137
Query 1216 ATATTATATGAGGTCCTTAGGCTATATCCTCCAGTAACCCAGCTGACTCGAGCCATTCAC 1275
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1138 ATATTATATGAGGTCCTCAGGCTATATCCTCCAGTAACCCAGCTGACCCGAGCCATTCAC 1197
Query 1276 AAAGAGCTGAAGCTAGGCGATCTGACCCTACCAGGCGGTGTTCAGATCAGTCTACCTATT 1335
|||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1198 AAAGAGATGAAGCTAGGCGATCTGACGCTACCAGGCGGTGTTCAGATCAGTCTACCTATT 1257
Query 1336 CTGCTAGTCCAACACGACATCG-AGCTGTGGGGAAACGACGCAGCAGAGTTCAATCCTGA 1394
||||||||||||| |||| || ||||||||||||| || ||||| |||||||| || ||
Sbjct 1258 CTGCTAGTCCAACGTGACA-CGGAGCTGTGGGGAAAGGATGCAGCGGAGTTCAAGCCAGA 1316
Query 1395 CAGATTTAAAGATGGTCTTTCAAAGGCAACAAAGAGCCAAGTCTCCTTCTTTCCCTTTGC 1454
||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1317 GAGATTCAAAGACGGTCTTTCAAAGGCAACAAAGAGCCAAGTCTCATTCTTTCCCTTTGC 1376
Query 1455 GTGGGGACCGAGGATATGCATAGGCCAGAACTTTGCCCTGTTAGAGGCAAAAATGGCAAT 1514
||||||||||||||||||||| |||||||| ||||||||||| |||||||| ||||||||
Sbjct 1377 GTGGGGACCGAGGATATGCATCGGCCAGAATTTTGCCCTGTTGGAGGCAAAGATGGCAAT 1436
Query 1515 GGCATTGATTCTGCGGAGGTTCTCGTTTGAGATTTCTCCTTCCTATGTTCACGCACCATA 1574
||||||||||||| ||| ||||| |||||| | |||||||||||||| || || || ||
Sbjct 1437 GGCATTGATTCTGAAGAGATTCTCCTTTGAGCTCTCTCCTTCCTATGTCCATGCGCCTTA 1496
Query 1575 CACAGTCATCACCATTCACCCACAGTTCGGTGCTCAGCTTATCATGCACAAGCTCTAATC 1634
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1497 CACAGTCATCACCATTCACCCACAATTCGGTGCTCAGCTTATCATGCACAAGCTATAATC 1556
> Ahg952533 jgi|Araly1|952533|scaffold_85500001.1
Length=567
Score = 390 bits (211), Expect = 2e-107
Identities = 239/252 (95%), Gaps = 4/252 (2%)
Strand=Plus/Plus
Query 587 AGAATATGGTACCTGCGTTCCACCAGAGCTGTAGGGAAG-TTGTTGGCGAATGGGATC-A 644
||||||||||||||||||||||||||||||| || | || |||||||||||||||| | |
Sbjct 18 AGAATATGGTACCTGCGTTCCACCAGAGCTGCAGCG-AGATTGTTGGCGAATGGGA-CAA 75
Query 645 GTTAGTATCGGATAAAGGGTCGTCATGTGAGGTAGACGTTTGGCCTGGGCTTGTGAGTAT 704
|||||| |||||||| |||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 76 GTTAGTGTCGGATAAGGGGTCGTCCTGTGAGGTGGACGTTTGGCCTGGGCTTGTGAGTAT 135
Query 705 GACTGCAGATGTGATCTCTCGTACTGCATTTGGCAGCAGCTACAAAGAAGGGCAGAGGAT 764
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 136 GACTGCAGATGTGATCTCTCGTACTGCTTTTGGCAGCAGCTACAAAGAAGGGCAGAGGAT 195
Query 765 ATTTGAGCTCCAAGCAGAACTAGCACAGCTCATCATTCAAGCTTTTAGGAAAGCTTTCAT 824
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 196 CTTTGAGCTCCAAGCAGAACTAGCACAGCTCATCATTCAAGCTTTTAGGAAAGCTTTCAT 255
Query 825 CCCTGGATATAG 836
|||||||| |||
Sbjct 256 CCCTGGATTTAG 267
Score = 331 bits (179), Expect = 1e-89
Identities = 232/258 (90%), Gaps = 2/258 (1%)
Strand=Plus/Plus
Query 1377 AGCAGAGTTCAATCCTGACAGATTTAAAGATGGTCTTTCAAAGGCAACAAAGAGCCAAGT 1436
|||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||
Sbjct 289 AGCAGAGTTCAATCCTGAGAGATTCAAAGACGGTCTTTCAAAGGCAACAAAGAGCCAAGT 348
Query 1437 CTCCTTCTTTCCCTTTGCGTGGGGACCGAGGATATGCATAGGCCAGAACTTTGCCCTGTT 1496
|||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 349 CTCCTTATTTCCTTTTGCGTGGGGACCGAGGATATGCATCGGCCAGAACTTTGCCCTGTT 408
Query 1497 AGAGGCAAAAATGGCAATGGCATTGATTCTGCGGAGGTTCTCGTTTGAGATTTCTCCTTC 1556
||||||||||||||||||||||||||||| | ||| ||||| ||||| ||||||||||
Sbjct 409 GGAGGCAAAAATGGCAATGGCATTGATTCTACAGAGATTCTCCCTTGAGCTTTCTCCTTC 468
Query 1557 CTATGTTCACGCACCAT-ACACAGTCATCACCATTCACCCACAGTTCGGTGCTCAGCTTA 1615
||| ||||| || || | | |||||| ||||||||||||||||||| ||||||| || |
Sbjct 469 CTACGTTCATGCGCC-TCAAACAGTCGTCACCATTCACCCACAGTTTGGTGCTCCTCTAA 527
Query 1616 TCATGCACAAGCTCTAAT 1633
|| |||||||||| ||||
Sbjct 528 TCTTGCACAAGCTATAAT 545
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67076921445
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5