BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G14770.1
Length=1666
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929255 jgi|Araly1|929255|scaffold_301712.1 1236 0.0
> Ahg929255 jgi|Araly1|929255|scaffold_301712.1
Length=754
Score = 1236 bits (669), Expect = 0.0
Identities = 726/754 (96%), Gaps = 2/754 (0%)
Strand=Plus/Plus
Query 483 TTTAAGACAGAG-AG-AAGCTCATGGATGTTTTTGCTTTCAATGCTTCTTTATCCATGTG 540
|||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTTAAGACAGAGAAGCTTCCTCATGGATGTTTTTGCTTTCAATGCTTCTTTATCCATGTG 60
Query 541 TAAAGATGTTGCCGGAATCGCAGGCAACATATTTGCATTTGGACTCTTCGTTTCACCAAT 600
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 61 TAAAGATGTTGCCGGAATCGCAGGCAACATATTTGCATTTGGGCTCTTCGTTTCACCAAT 120
Query 601 GCCAACGTTTAGGAGGATCATGAGGAACAAATCGACGGAGCAATTCTCCGGTTTACCATA 660
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GCCAACGTTTAGAAGGATCATGAGGAACAAATCGACGGAGCAATTCTCCGGTTTACCATA 180
Query 661 CATTTACGCTCTCTTAAACTGCTTGATCTGCCTTTGGTATGGCACACCTTTCATATCACA 720
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 181 CATTTACGCTCTCTTAAACTGCTTGATCTGTCTTTGGTATGGCACACCTTTCGTATCACA 240
Query 721 CAGCAATGCCATGCTTATGACTGTGAATTCCGTTGGAGCTACGTTTCAGCTTTGCTACAT 780
||||||| |||||||||||||||||||||| |||||||| || |||||||||||||||||
Sbjct 241 CAGCAATACCATGCTTATGACTGTGAATTCTGTTGGAGCCACTTTTCAGCTTTGCTACAT 300
Query 781 TATCCTCTTCATCATGCATACAGACAAGAAGAACAAGATGAAGATGCTTGGTTTGCTTTT 840
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TATCCTATTCATCTTGCATACAGACAAGAAGAACAAGATGAAGATGCTTGGTTTGCTTTT 360
Query 841 TGTGGTGTTTGCTGTGGTTGGAGTGATTGTAGCTGGAAGTTTGCAGATACCTGACCAGCT 900
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 361 TGTGGTGTTTGCTGTGGTTGGAGTGATTGTTGCTGGAAGTTTGCAGATACCTGACCAGCT 420
Query 901 CACACGGTGGTACTTTGTCGGGTTCTTGAGCTGCGGTTCTCTTGTTTCAATGTTTGCCTC 960
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CACACGATGGTACTTTGTCGGGTTCTTGAGCTGCGGTTCTCTTGTTTCAATGTTTGCCTC 480
Query 961 GCCGTTGTTTGTTATTAACCTAGTGATTCGGACTAAGAGCGTTGAGTTTATGCCGTTTTA 1020
||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 481 GCCTTTGTTTGTTATCAACCTAGTGATTCAGACTAAGAGCGTTGAGTTTATGCCGTTTTA 540
Query 1021 TCTCTCGCTATCGACTTTCTTGATGAGTGCTTCCTTCCTTCTTTACGGGTTATTCAACAG 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 541 TCTCTCGCTATCGACTTTCTTGATGAGTGCTTCCTTCCTTCTTTACGGGTTATTCAATAG 600
Query 1081 CGATGCCTTTGTTTATACACCAAATGGAATAGGAACGATTCTTGGCATTGTGCAGCTGGC 1140
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 601 CGACGCCTTTGTTTATACACCAAATGGAATAGGAACGATTCTTGGTATTGTGCAGCTGGC 660
Query 1141 TTTGTACTGTTACTACCACAGGAATTCTATAGAAGAAGAAACAAAAGAGCCTTTGATTGT 1200
||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||
Sbjct 661 TTTGTACTGTTACTACCACTGGAATTCTATAGCAGAAGAAAAAAAAGAGCCTTTGATTGT 720
Query 1201 TTCTTACGTGTGAGGTTCGCGCAAAGAAGCAAAT 1234
|||||| ||||||||||||| |||||||||||||
Sbjct 721 TTCTTATGTGTGAGGTTCGCACAAAGAAGCAAAT 754
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62468001800
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5