BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G14810.1
Length=2784
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478894 jgi|Araly1|478894|fgenesh2_kg.3__1595__AT3G14810.1 4305 0.0
> Ahg478894 jgi|Araly1|478894|fgenesh2_kg.3__1595__AT3G14810.1
Length=2764
Score = 4305 bits (2331), Expect = 0.0
Identities = 2614/2750 (95%), Gaps = 22/2750 (1%)
Strand=Plus/Plus
Query 47 aaaaaaaCCTCTCTCCATTTTTTCCGGAAATAATTACTTCTTTTAGGTAAGAAAATCTAG 106
||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 25 AAAGAAACCTCTCTCCATTTTTTCCGGAAATAATTGCTCCTTTTAGGTAAGAAAATCTAG 84
Query 107 TCTCTTGCCTTTGTGAGATCTCTAACGGAATCATGGCGGCTGTCGATTCAACTGATCGGC 166
||| |||||||||||||||||||||| ||||||||||||| || ||||||||||||||||
Sbjct 85 TCTTTTGCCTTTGTGAGATCTCTAAC-GAATCATGGCGGCCGTTGATTCAACTGATCGGC 143
Query 167 GGGACTTCATAGTGAACATCAACGGCCAAGAGAGTGGAGCCGTCGGTGCTACAGGGTCAA 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 144 GGGACTTCATAGTGAACATCAACGGCCAAGAGAGTGGAGCCGTCGGTGCTACAGGGTCAA 203
Query 227 GCAGCAATGCTGAGGGAGGTAATATTTGGAAAGAGTCAAGCTATGACTTTTGGGATGGTG 286
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 204 GCAGCAATGCTGAGGGAGGTAATATTTGGAAAGAATCAAGCTATGATTTTTGGGATGGTG 263
Query 287 AAAAGGGTAAGAATGATAAGAAAGGA---GACGACGAAGACGAAGACGGCGGCAGTTTCC 343
|||||||||||||||||||||||||| | |||||| || |||||||||||||||||||
Sbjct 264 AAAAGGGTAAGAATGATAAGAAAGGAGCCGGCGACGACGATGAAGACGGCGGCAGTTTCC 323
Query 344 ATTTCAGGCAG-CGGGGAGAGCGGAGGCATTCG-TCAGCTGAGTTATCT-GATCCGCCGT 400
|||||| |||| || || ||||||||||| | | ||||||||||||| | |||||||||
Sbjct 324 ATTTCACGCAGCCGAGG-GAGCGGAGGCA-TAGTTCAGCTGAGTTAT-TAGATCCGCCGA 380
Query 401 CGAAGCTAATTGGTCAGTTTCTTCACAAGCAGAGAGCTTCAGGAGATGAGATCTCTTTAG 460
||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 381 CGAAGCTAATTCGTCAGTTTCTTCACAAGCAGAGAGCTTCAGGAGACGAGATCTCTCTAG 440
Query 461 ATGTTGAGCTTAACATGGCAGAGCTACAGAGCAACACGCCGCCACGTCCTGCAACTGCTA 520
||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
Sbjct 441 ATGTTGAGCTTAACATGGCAGAGCTACAGAGCAACACGCCGCCACGTGCTACAACTGCAA 500
Query 521 GCAACACGCCGCGACGTGGCTTAACGACGATTTCTGAATCTTCTTCTCCGGTT-AAGACT 579
|||||||||||||||||||||||||||||||||| || ||||||||||| ||| | ||||
Sbjct 501 GCAACACGCCGCGACGTGGCTTAACGACGATTTCAGAGTCTTCTTCTCC-GTTCACGACT 559
Query 580 AAAGTTAAAGCAGACGCAGTAAGACGGAGGCAGAACAGAACATCGCTAGGTGGAAGTAGC 639
|||||| |||| |||||||||||||||||||||| ||||| ||| || ||||||||||||
Sbjct 560 AAAGTTCAAGCTGACGCAGTAAGACGGAGGCAGAGCAGAATATCTCTCGGTGGAAGTAGC 619
Query 640 GACGAGGAAGGTCGAAACAGAGACGAAGCAGAGGTTTTGAA-GTGTGGTTCGAAGAAACC 698
||||| |||||||||||||||||||||||||||||| |||| || | ||||||| |||||
Sbjct 620 GACGAAGAAGGTCGAAACAGAGACGAAGCAGAGGTTGTGAAGGT-TAGTTCGAATAAACC 678
Query 699 GATGTTGAGTAGGAACAAGACCAAATCAAGATTGCAGGATCCTCCAACACCGACACATCC 758
||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 679 GATGTTGAGCAGGAACAAGACCAAATCGAGATTGCAGGATCCTCCTACACCGACACATCC 738
Query 759 AGCGATTGACAAGACAGAGATGAAGTCTGGTCGGAGATCCGGGATTTTTAAATCTGGGTT 818
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 739 AGCGATTGACAAAACAGAGATGAAGTCTGGTCGGAGATCCGGGATTTTTAAATCTGGGTT 798
Query 819 TCTTGGGAAAAGCCCTAAAGCGGGTACTCCGGGTCGGAATGGGTTTGAGGAAGAAGAAGA 878
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 799 TCTTGGGAAAAGCCCTAAAGCGGGTACTCCAGGTCGGAATGGGATTGAGGAAGAAGAAGA 858
Query 879 GGAGGATCCGTTTCTAGACGAGGATTTACCGGAGGAATTCAAAAGGGACAAACTTAGCTT 938
||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 859 GGAAGATCCGTTTCTAAACGAGGATTTACCGGAGGAATTCAAAAGGGATAAACTTAGCAT 918
Query 939 CTGGGTTTTCCTTGAATGGATAAGTCTAGTTCTGATAGTCACAAGTTTGGTCTGTAGCTT 998
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 919 CTGGGTTTTTCTTGAATGGATAAGTCTAGTTCTGATAGTCACCAGTTTGGTCTGTAGCTT 978
Query 999 AACCATACATAACTTGCAACGCAAGACATGGTGGAAGCTGGATTTGTGGAAATGGGAAGT 1058
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 979 AACCATACATAACTTGCAACGCAAGACATGGTGGAAGCTGGATTTGTGGAAATGGGAAGT 1038
Query 1059 GACTGTTTTGGTGTTGATATGTGGGAGATTAGTCTCGAGTTGGATAGTGAGAATCATTGT 1118
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1039 GACGGTTTTGGTGTTGATATGTGGGAGATTAGTCTCGAGTTGGATAGTGAGAATCATTGT 1098
Query 1119 CTTCTTGGTCGAGAAAAACTTCAC-TTGGAGGAAAAGGGTTTTGTATTTCGTCTACGGAG 1177
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 1099 CTTCTTGGTCGAGAAAAACTTC-CTTTGGAGGAAAAGGGTTTTGTATTTCGTCTACGGAG 1157
Query 1178 TGAGAAAATCTGTTCAAAACTGCTTGTGGTTAGGGCTAGTGTTGCTCGCGTGGCATTTCT 1237
| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1158 TTCGAAAATCTGTTCAAAACTGCTTGTGGTTAGGGCTAGTGTTGCTTGCGTGGCATTTCT 1217
Query 1238 TGTTCGATAAGAAAGTCGAAAGAGAGACTCGGAGCACTGCTCTTCGGTATGTGACGAGAG 1297
||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 1218 TGTTCGATAAGAAAGTCAAAAGAGAGACTCGGAGCACTGCGCTTCGGTATGTGACGAGAG 1277
Query 1298 TGTTGGTATGTTTGCTTGTGGCTCTTATCATTTGGTTGGTTAAAACAATTCTGGTTAAAG 1357
| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1278 TTTTGGTATGTTTGCTTGTGGCTCTTATCATTTGGCTGGTTAAAACAATTCTGGTTAAAG 1337
Query 1358 TTTTGGCTTCATCGTTCCACATGAGCACTTACTTTGATCGGATTCAGGAGTCGTTGTTCA 1417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1338 TTTTGGCTTCATCGTTCCACATGAGCACTTACTTTGATCGGATTCAGGAGTCGTTGTTCA 1397
Query 1418 CTCAATACGTGATTGAAACTCTCTCCGGTCCTCCTTTGATGGAGATTCAGAGAATGGAGG 1477
||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 1398 CTCAATATGTGATTGAAGTTCTCTCTGGTCCTCCTTTGATGGAGATTCAGAGAATGGAGG 1457
Query 1478 AAGAAGAGCAACAAGTAGCAGAAGATGTTAAGAGCTTAGAGAAATTAGCCGGAGCTAAGC 1537
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1458 AAGAAGAGCAACAAGTAGCAGAAGATGTTAAGAGCTTAGAGAAATTAGCTGGAGCTAAGC 1517
Query 1538 TGCCTCCAGCTCTAAAAGCGACCGTCAAGAGTTTTATGAAAGTCGGGAAAAGTCCGGGAC 1597
|||||||||||||||| |||||||| || ||||||||||||||||||||| ||| ||||
Sbjct 1518 TGCCTCCAGCTCTAAAGGCGACCGTTAAAAGTTTTATGAAAGTCGGGAAACGTCGGGGAA 1577
Query 1598 TGAATCGGATTGGTTCTAAGAGAGGAGAAGATGGCGAAGGGATTAGGATTGATCAGTTGA 1657
||| ||||||||||||||| | ||||||||||||||||||||||||||||||||| |||
Sbjct 1578 TGACTCGGATTGGTTCTAAAAAAGGAGAAGATGGCGAAGGGATTAGGATTGATCATTTGC 1637
Query 1658 AGAGAATGAACACAAAGAATGTGTCTGCTTGGAACATGAAGAGATTGATGAATATAATAC 1717
|||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 1638 AGAGAATGAACACAGAGAATGTATCTGCTTGGAACATGAAGAGATTGATGAATATAGTAC 1697
Query 1718 TAAAAGGCGCTATTTCTACTTTGGATCAAAATATGCAGGACACTA-CTCAGGAGGATGAG 1776
|||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||
Sbjct 1698 TAAAAGGCGCTATTTCTACTTTGGATCAAAATATACAGGACAC-ATCTCAGGAGGATGAG 1756
Query 1777 GACGCTACGCATATAAGAAGCGAGTACGAAGCTAAATGCGCAGCTAGGAAGATTTTTCAC 1836
|||||||||| ||||||||||||| |||||||||||| ||||||||||||||||| |||
Sbjct 1757 AACGCTACGCAGATAAGAAGCGAGTGCGAAGCTAAATGTGCAGCTAGGAAGATTTTCCAC 1816
Query 1837 AACGTCACCGAGCCAGGTTCTAGGTACATATATTTGGAAGACTTCTTGCGTTTTCTATGT 1896
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1817 AATGTCACCGAGCCAGGTTCCAGGTACATATATTTGGAAGACTTCTTGCGTTTTCTATGT 1876
Query 1897 GAAGAGGAGGCTGAAAGAGCCATGGCTCTCTTTGAAGGAGCTTCAGAGAGCGATAAGATC 1956
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1877 GAAGAGGAGTCTGAAAGAGCCATGGCTCTCTTTGAAGGAGCTTCAGAGAGCAATAAGATC 1936
Query 1957 AGCAAGTCTTGCCTCAAGAATTGGGTGGTTAAGGCGTTTAGAGAAAGGAGAGCTCTGGCT 2016
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1937 AGCAAATCTTGCCTCAAGAATTGGGTGGTTAAGGCGTTTAGAGAAAGGAGGGCTCTGGCT 1996
Query 2017 TTGACCTTAAACGATACAAAAACAGCAGTGGA-CAGACTTCACCGTATAATCAACGTGGT 2075
||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||
Sbjct 1997 TTGACCTTAAACGATACAAAAACAGCAGT-GACCAGGCTTCACCGTATAATCAACGTGGT 2055
Query 2076 AATTGGCATTATAATCATAATCATCTGGCTTCTTATACTAGGAATCGCCACAACCAGATT 2135
|||||||||||| ||||| |||||||||| |||||||| ||||||||||||||||||||
Sbjct 2056 GATTGGCATTATAGTCATAGTCATCTGGCTCCTTATACTGGGAATCGCCACAACCAGATT 2115
Query 2136 CTTGCTAGTCTTAAGCTCTCAGCTCCTTCTAGTAGCCTTTGTATTTGGAAACTCCTGCAA 2195
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 2116 CTTGCTAGTCTTAAGCTCTCAGCTCATTTTAGTAGCCTTTGTATTTGGAAACTCCTGCAA 2175
Query 2196 AACCATCTTCGAAGCCATCATTTTCCTTTTTGTTATGCACCCATTTGATGTCGGTGACCG 2255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2176 AACCATCTTCGAAGCCATCATTTTCCTTTTTGTTATGCACCCATTTGATGTCGGTGACCG 2235
Query 2256 ATGTGAAATCGACGGTGTTCAGTTGGTAGTGGAGGAGATGAACATATTGACGACTGTTTT 2315
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 2236 ATGTGAAATCGACGGTGTTCAGTTGGTTGTGGAGGAGATGAACATATTAACGACTGTTTT 2295
Query 2316 CTTGCGATATGATAATCAAAAGATCATATATCCGAATAGTGTCCTCGGCACAAAACCTAT 2375
||||||| |||||||||||||||||| ||| ||||| |||||||||||||||||||||||
Sbjct 2296 CTTGCGAGATGATAATCAAAAGATCACATACCCGAACAGTGTCCTCGGCACAAAACCTAT 2355
Query 2376 AGCTAACTATTACCGAAGTCCCGATATGGGAGACGCGGTTGAATTCTGTGTTCATATAGC 2435
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2356 AGCTAACTATTACCGAAGTCCCGACATGGGAGACGCGGTTGAATTCTGTGTTCATATAGC 2415
Query 2436 AACTCCTCCTGAAAAGATCACTGCCATTAAACAGAGAATACTAAGTTACGTAGACAACAA 2495
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 2416 AACTCCTCCTGAAAAGATCACTGCCATTAAACAAAGAATACTAAGTTATGTAGACAACAA 2475
Query 2496 GAAGGATTATTGGTATCCTGCACCTATGATTGTGTTCCTAAGCATGGATGACTTGAATAG 2555
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2476 GAAGGATTACTGGTATCCTGCACCTATGATTGTGTTCCTAAGCATGGATGACTTGAATAG 2535
Query 2556 TGTGAAGATAGCGGTGTGGTTGACACATAGAATGAATCATCAAGACATGGGAGAGAGGTA 2615
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2536 TGTGAAGATAGCCGTGTGGTTGACACATAGAATGAATCATCAAGACATGGGAGAGAGGTA 2595
Query 2616 TATAAGAAGAGGTCTATTACTAGAGGAAGTGGGAAAAACTTGTAGAGAGCTAGATATCGA 2675
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 2596 TATAAGAAGAGGTCTATTACTAGAGGAAGTGGCAAAAACTTGTAGAGAGCTCGATATCGA 2655
Query 2676 GTATCGCTTATATCCTCTTAACATTAATGTTCGAAGTCTCCCTCCTACGGCTAATCCAAC 2735
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 2656 GTATCGCTTATATCCTCTTAGCATTAATGTTCGAAGTCTCCCTCCTACGGCTAATC-AAC 2714
Query 2736 T-TCTTCAGACCGCATTCCTCCTTCATGGATGCAACAACGCGGTCCTTGA 2784
||| ||| ||| |||||||||||||||||||||||| |||| |||||
Sbjct 2715 CGTCTCCAGGCCGTGTTCCTCCTTCATGGATGCAACAACACGGTTCTTGA 2764
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105052895710
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5