BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G14830.1 Length=1941 Score E Sequences producing significant alignments: (Bits) Value Ahg478897 jgi|Araly1|478897|fgenesh2_kg.3__1598__AT3G14830.1 2460 0.0 > Ahg478897 jgi|Araly1|478897|fgenesh2_kg.3__1598__AT3G14830.1 Length=1743 Score = 2460 bits (1332), Expect = 0.0 Identities = 1513/1598 (95%), Gaps = 21/1598 (1%) Strand=Plus/Plus Query 189 CGTCAAACCCTAATTTTGACTTCCGGGTG-GATAATCCCAAATCCGTTTCATAGCTCGAT 247 ||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||| Sbjct 59 CGTCAAACCCTAATTTTGACTTCAAGGTGTG-TAATCCCAAATCCGTTTCATAGCTCGAT 117 Query 248 TTCACTGATAAATTTCCGAGCTTTCGGTGTTTTGATTCGCATGAGGATTTGAATTGACTA 307 |||||| ||||||||||||| | ||||||||||||||||||||||||| | | | Sbjct 118 TTCACTCATAAATTTCCGAG----C----TTTTGATTCGCATGAGGATTTGAATAGGCAA 169 Query 308 GGAAAGATAAAGATGTCTA-TGGAGAGATCTTTAGAAGCTTGGGAAGAGGTTCAACGACA 366 ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| Sbjct 170 GGAAAGATAAAGATGTC-AGTGGAGAGATCTTTAGAAGCTTGGGAAGAGGTTCAACGACA 228 Query 367 TGGACAAGACTTAGCTGATCGACTTGCTCAAGGATTTACGGGTTTGATTCATATAAACCC 426 ||| ||||| |||||||||||||||||||| |||||||| |||||||||||||||||||| Sbjct 229 TGGGCAAGATTTAGCTGATCGACTTGCTCAGGGATTTACTGGTTTGATTCATATAAACCC 288 Query 427 ACCTTCGTTTCCATGGCCGCCGAATCACCATCATCTTCACAAGGCGAAACTGTTCGATCT 486 ||||||||||||||||||||| ||||| |||| || ||||||||||||| |||||||| Sbjct 289 ACCTTCGTTTCCATGGCCGCCTAATCATAATCA--TT-ACAAGGCGAAACTATTCGATCT 345 Query 487 CGAGTTCCCAACTCAACATTTCAGTGTTATTAAGGATTCTAGGTTTAGTATCAACCAACC 546 ||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 346 CGAGTTCCCTAGTCAACATTTCAGTGTTATTAGGGATTCTAGGTTTAGTATCAACCAACC 405 Query 547 AATCAACGGTGTCACAGCGATTCTCGATATTGGGAATAAGATAGGTCAAGCTGGTGTTGA 606 |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 406 CATCAACGGTGTCTCAGCGATTCTTGATATTGGGAATAAGATAGGTCAAGCTGGTGTTGA 465 Query 607 CTTTGGTGCTGGG-TTGAATGTGATGGTCCAACAGTTCTTCAGGAGGTTGCCTATACCGT 665 |||||||| ||| |||||||||||||||||||| ||||| |||||||||||||| |||| Sbjct 466 TTTTGGTGC-GGGTTTGAATGTGATGGTCCAACAATTCTTTAGGAGGTTGCCTATTCCGT 524 Query 666 TCTTACACGAGGATAATAACAAGCTTGTTGTCTCTGTGGATGGTGATAAGAGTACAAGGA 725 |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 525 TCTTGCACGAGGATAATAACAAGCTTGTTGTCTCTGTTGATGGTGATAAGAGTACAAGGA 584 Query 726 GCCATAGAGCTTATGTGATCACAAAAGGGGATTTGGGAATGGCTACAGAACGGTTGAGGG 785 ||||||| ||||||| |||||||||||| ||||||||| ||||| ||||||||||||||| Sbjct 585 GCCATAGGGCTTATGCGATCACAAAAGGTGATTTGGGATTGGCTGCAGAACGGTTGAGGG 644 Query 786 ACTCAGGGTTTTCTAAGACAGATGATACTGCTTCTGTTACTATGTCTGAGGAGGAAGTTG 845 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 645 ACTCAGGGTTTTCTAAGACAGATGATACTGCTTCTGTTACTATGTCTGAGGAGGAAGTTG 704 Query 846 CAGATTCCTATCTTAGAGCTGCTGGATTGCTTGGAAGATCAAAGGGAACAATTGATACGT 905 ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| || Sbjct 705 CAGATTCCTATCTAAGAACTGCTGGATTGCTTGGAAGATCAAAGGGAACAATTGATATGT 764 Query 906 CATCAAGTTATGACAGTAGGACAAATGGTATGGAACATTCATTGGCAGCCAGAGGAGATC 965 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 765 CATCAAGTTATGACAGTAGGACAAATGGTATGGAACATTCATTGGCAGCCAGAGGAGACC 824 Query 966 TCTGGAGGGTAGAAGCTTCACATTCGAGTTCTACTGCAAGCGATGGAAATTCGTCTCTCT 1025 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 825 TCTGGAGGGTAGAAGCTTCACATTCGAGTTCTACTGCAAGCGATGGAAATTCGTCTCTCT 884 Query 1026 TTCTTCTCCAACTTGGACCACTTCTCTTTCTACGCGATTCAACTCTTCTTTTACCGTTAC 1085 |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 885 TTCTTCTCCAGCTTGGACCACTTCTCTTTCTACGCGATTCAACGCTTCTTTTACCGTTAC 944 Query 1086 ACTTATCAAAACAGCACTTGCTCTGGTATGGATATGATAGGAAGAAAGGTATGCATTCAC 1145 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 945 ACTTATCAAAACAACACTTGCTCTGGTATGGATATGATAGGAAGAAAGGTATGCATTCAC 1004 Query 1146 TCTGTCCAGCTATATGGTCAAAGCATCGGAGGTGGCTTATGATGTCAATGCTCTCTCTCA 1205 |||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1005 TCTGCCCAGCTTTATGGTCAAAGCATCGAAGGTGGCTTATGATGTCAATGCTCTCTCTCA 1064 Query 1206 ATCCTTTAGCTTGCTCATTTATGGATTTGCAATTTCCAAACGGGCAATTGACATATGTAT 1265 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1065 ATCCTTTAGCTTGCTCATTTATGGATTTGCAATTTCCAAACGGGCAATTGACATATGTAT 1124 Query 1266 CTGGCGAAGGACTGACGACAAGTGCTTTTGTGCCTTTTTGTGGTGGTCTTCTTCAAGCAC 1325 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1125 CTGGCGAAGGACTGACGACAAGTGCTTTTGTGCCTTTTTGTGGCGGTCTTCTTCAAGCAC 1184 Query 1326 AGGGTCAATATCCAGGCGACATGAGATTTAGTTACTCTTGTAAGAATAAATGTGGAACCC 1385 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1185 AGGGTCAATATCCAGGCGACATGAGATTTAGTTACTCTTGTAAGAATAAATGTGGAACCC 1244 Query 1386 GAATCACACCAATGGTACATTGGCCTGATAAATCATTTGGGTTGGATCTTTCTCAACCCT 1445 ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| Sbjct 1245 TAATCACACCAATGGTACATTGGCCTGACAAATCATTTGCGTTGGATCTTTCTCAACCCT 1304 Query 1446 TGGCTTGGCGTAGA-TCCGGACTACTGATGAAACCGACAATTCAAGTCAGTGTATGTCCC 1504 |||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||| Sbjct 1305 TGGCTTGGCGTAGAGTC-GGACTACTGATGAAACCAACAATTCAAGTCAGTGTATGTCCC 1363 Query 1505 ACATTCGGTGGAAGCAATCCCGGGATT-AAGGCAGAAGTTATTCACTCGTTGAGCGATGA 1563 ||||| |||||||||||||| ||| || || ||||||||||||||||||||||||||||| Sbjct 1364 ACATTTGGTGGAAGCAATCCGGGG-TTGAAAGCAGAAGTTATTCACTCGTTGAGCGATGA 1422 Query 1564 CTTGAATCTGATATGTGGCTACGCACTCAATGCACATCCTTCAGCATTTGCCTCTGTAGC 1623 ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| | Sbjct 1423 CTTGAATCTCATATGTGGCTATGCACTCAATGCACATCCTTCAGCATTTGCCTCTGTATC 1482 Query 1624 TTTTGGTCGGTCGAAATGGAATGGAAACATTGGACGCACGGGAATAGTTGTTAGAGCTGA 1683 |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1483 TTTTGGACGGTCGAAATGGAATGGGAACATTGGACGCACGGGAATAGTTGTTAGAGCTGA 1542 Query 1684 TACTCCACTTGCAAGTATTGGCCAGCCTTCTTTCTCTATCCAGCTTAATAACGCTTTCGA 1743 |||||| ||||||||||| ||||||||||| |||||| ||||| ||||||||||| |||| Sbjct 1543 TACTCCTCTTGCAAGTATCGGCCAGCCTTCCTTCTCTGTCCAGTTTAATAACGCTATCGA 1602 Query 1744 GTTCTGAATCTTTCCAATATAACATAGGAGaaaaaaaa 1781 |||||||| ||||||||||||| |||| | |||||||| Sbjct 1603 GTTCTGAACCTTTCCAATATAAGATAGAAAAAAAAAAA 1640 Score = 60.2 bits (32), Expect = 5e-08 Identities = 34/35 (97%), Gaps = 0/35 (0%) Strand=Plus/Plus Query 25 CAAAGTGGCGGTAACTGGTAAGGTTAATCTCTGTG 59 |||||||||||||||||||||||||||||| |||| Sbjct 1 CAAAGTGGCGGTAACTGGTAAGGTTAATCTGTGTG 35 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 72942819175 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5