BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G14940.1
Length=3314
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478917 jgi|Araly1|478917|fgenesh2_kg.3__1618__AT3G14940.1 5341 0.0
Ahg474459 jgi|Araly1|474459|fgenesh2_kg.1__4413__AT1G53310.2 2998 0.0
> Ahg478917 jgi|Araly1|478917|fgenesh2_kg.3__1618__AT3G14940.1
Length=3200
Score = 5341 bits (2892), Expect = 0.0
Identities = 3092/3186 (97%), Gaps = 23/3186 (1%)
Strand=Plus/Plus
Query 148 GAAGAAGATTTGATTGATCGGCGATAATGGCGGGTCGGAACATAGAGAAGATGGCATCTA 207
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 19 GAAGAAGATTTGATTGATCGGCGATAATGGCGGGTCGGAACATAGAGAAGATGGCATCAA 78
Query 208 TTGATGCTCAGCTTCGGCAACTCGTTCCTGCTAAAGTCAGTGAAGACGATAAGCTTGTTG 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 79 TTGATGCTCAGCTTCGGCAACTCGTTCCTGCTAAAGTCAGTGAAGACGATAAGCTTGTTG 138
Query 268 AGTACGATGCTCTTCTCCTTGATCGCTTTCTCGACATTCTCCAGGATTTACACGGCGAGG 327
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 139 AGTACGATGCTCTTCTCCTCGATCGCTTTCTCGACATTCTCCAGGATTTACACGGCGAGG 198
Query 328 ATCTCCGTGAAACGGTTCAAGAGTTATACGAGCTTTCTGCTGAGTATGAAGGGAAGCGTG 387
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 199 ATCTCCGTGAAACCGTTCAAGAGCTATACGAGCTTTCTGCTGAGTATGAAGGGAAGCGTG 258
Query 388 AGCCT-AGCAAGCTTGAGGAGCTAGGGAGTGTCCTAACGAGTTTGGATCCTGGTGACTCA 446
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 259 AGCCTGAG-AAGCTTGAGGAGCTAGGGAGTGTCCTAACGAGTTTGGATCCTGGTGACTCC 317
Query 447 ATTGTTATCTCCAAGGCTTTCTCTCACATGCTTAACTTAGCCAATTTGGCTGAGGAGGTG 506
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 318 ATTGTTATCTCCAAGGCTTTCTCTCACATGCTTAACTTAGCCAATTTGGCCGAGGAAGTG 377
Query 507 CAGATTGCTCACCGTCGCAGGATCAAGAAGCTGAAGAAAGGTGATTTCGTTGATGAGAGT 566
|||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 378 CAGATTGCTCACCGCCGCAGGATCAAGAAGTTGAAGAAGGGTGATTTCGTTGATGAGAGT 437
Query 567 TCTGCAACTACTGAATCCGATATTGAAGAGACTTTTAAGAGGCTCGTTTCGGATCTTGGT 626
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 438 TCTGCAACTACTGAATCCGATATCGAAGAGACTTTTAAGAGACTCGTTTCGGATCTTGGT 497
Query 627 AAGTCTCCTGAAGAGATCTTTGATGCCTTGAAGAATCAGACTGTGGATCTGGTTTTGACT 686
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 498 AAGTCTCCTGAAGAGATCTTTGATGCCTTGAAGAATCAGACTGTGGATTTGGTTTTGACT 557
Query 687 GCTCATCCTACTCAGTCTGTGCGTAGATCATTGCTTCAGAAGCATGGGAGGATAAGGGAC 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 558 GCTCATCCTACTCAGTCTGTGCGTAGATCATTGCTTCAGAAGCATGGGAGGATAAGGGAC 617
Query 747 TGTCTTGCTCAACTCTATGCAAAGGACATTACTCCTGATGACAAGCAGGAGCTAGATGAG 806
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 618 TGTCTTGCTCAACTGTATGCAAAGGACATTACTCCTGATGACAAGCAGGAGCTCGATGAG 677
Query 807 TCTCTGCAAAGAGAGATTCAAGCTGCATTCCGAACAGATGAGATTAGAAGAACACCTCCA 866
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 678 TCTCTGCAAAGAGAGATTCAAGCTGCATTCCGAACAGATGAGATTAGAAGAACACCTCCA 737
Query 867 ACCCCACAAGATGAAATGAGAGCTGGAATGAGTTATTTCCACGAGACAATCTGGAAAGGT 926
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 738 ACCCCGCAAGATGAAATGAGAGCTGGAATGAGTTATTTCCACGAGACAATCTGGAAAGGT 797
Query 927 GTCCCCAAGTTCTTGCGCCGTGTGGACACAGCTCTGAAAAACATTGGGATTGATGAACGT 986
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 798 GTCCCCAAGTTCTTGCGCCGTGTGGACACAGCTCTGAAAAACATCGGGATTGATGAACGT 857
Query 987 GTTCCTTACAATGCCCCATTGATTCAATTCTCTTCGTGGATGGGCGGTGATCGTGATGGT 1046
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 858 GTTCCTTACAATGCCCCATTGATTCAATTCTCTTCATGGATGGGCGGTGATCGTGATGGT 917
Query 1047 AATCCGAGGGTCACACCTGAGGTCACTAGAGATGTGTGCTTGTTGGCTAGAATGATGGCT 1106
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 918 AATCCGAGGGTCACACCTGAGGTCACTAGAGATGTGTGCTTGCTGGCTAGAATGATGGCT 977
Query 1107 GCCAATCTCTACTATAACCAAATCGAGAATCTGATGTTTGAGTTATCTATGTGGCGTTGC 1166
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 978 GCCAATCTCTACTATAACCAAATCGAGAATCTGATGTTTGAGTTGTCTATGTGGCGTTGC 1037
Query 1167 ACTGATGAATTCCGTGTGCGGGCGGATGAACTGCACAGGAACTCAAGGAAAGATGCTGCA 1226
|||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 1038 ACTGATGAGTTCCGTGTCCGGGCGGATGAACTCCACAGGAACTCAAGGAAAGATGCTGCA 1097
Query 1227 AAACATTACATAGAATTCTGGAAGACAATTCCTCCAACTGAGCCATACCGTGTGATTCTT 1286
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1098 AAACATTACATAGAATTTTGGAAGACAATTCCTCCAACTGAGCCATACCGTGTGATTCTT 1157
Query 1287 GGTGATGTGAGGGATAAGCTGTATCACACACGTGAGCGTTCCCGCCAATTGCTGAGTAAT 1346
||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1158 GGTGATGTGAGGGATAAGCTGTATCACACACGTGAGCGTTCTCGTCAATTGCTGAGTAAC 1217
Query 1347 GGAATCTCGGATATTCCTGAAGAAGCTACCTTCACTAATGTGGAACAGTTCTTGGAGCCT 1406
||||||||||| || || |||||||| || ||||| ||||||||||||||||||||||||
Sbjct 1218 GGAATCTCGGACATCCCCGAAGAAGCAACTTTCACCAATGTGGAACAGTTCTTGGAGCCT 1277
Query 1407 CTTGAGCTCTGTTACCGATCACTATGTTCATGTGGTGACAGCCCGATAGCTGATGGAAGC 1466
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 1278 CTTGAGCTCTGTTACCGATCGCTATGTTCATGTGGTGACCGCCCGATAGCTGATGGAAGC 1337
Query 1467 CTTCTTGATTTCTTGAGGCAAGTCTCTACCTTTGGACTCTCCCTTGTGAGACTTGACATC 1526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1338 CTTCTTGATTTCTTGAGGCAAGTCTCTACCTTTGGACTCTCCCTTGTGAGACTTGACATC 1397
Query 1527 AGGCAAGAGTCTGAACGCCACACAGATGTCTTGGATGCTATCACCAAGCACTTGGACATC 1586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1398 AGGCAAGAGTCTGAACGCCACACAGATGTCTTGGATGCTATCACCAAGCACTTGGACATC 1457
Query 1587 GGTTCCTCCTATAGAGACTGGTCTGAAGAAGGCCGACAGGAATGGCTTCTTGCTGAACTA 1646
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1458 GGTTCCTCCTATAGAGACTGGTCTGAAGAAGGTCGACAGGAATGGCTTCTGGCTGAACTA 1517
Query 1647 AGCGGCAAACGTCCACTTTTCGGACCTGATCTTCCCAAAACCGAAGAAATTTCTGATGTC 1706
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1518 AGCGGCAAGCGTCCACTTTTCGGACCTGATCTTCCCAAAACCGAAGAAATTTCTGATGTC 1577
Query 1707 CTGGACACATTCAAAGTCATATCTGAGCTGCCTTCAGATTGTTTTGGAGCTTATATTATC 1766
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1578 CTGGACACATTCAAAGTTATATCTGAGCTGCCTTCAGATTGTTTTGGAGCTTACATTATC 1637
Query 1767 TCTATGGCAACTTCACCTAGTGATGTGCTTGCGGTTGAGCTTTTACAGCGCGAATGCCAT 1826
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1638 TCTATGGCAACTTCACCTAGTGATGTGCTTGCGGTTGAGCTTTTACAGCGTGAATGCCAT 1697
Query 1827 GTGAAAAATCCACTTAGAGTTGTTCCACTCTTTGAGAAGCTAGCTGATCTTGAAGCAGCT 1886
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1698 GTGAAAAATCCACTAAGAGTTGTTCCACTCTTTGAGAAGCTAGCTGATCTTGAAGCAGCT 1757
Query 1887 CCTGCCGCTGTTGCAAGACTCTTTTCTATAGACTGGTACAAAAACCGTATTAACGGTAAA 1946
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1758 CCTGCCGCTGTTGCAAGACTCTTTTCTATAGACTGGTACAAAAACCGTATTAACGGTAAA 1817
Query 1947 CAAGAGGTTATGATTGGTTACTCAGATTCAGGGAAAGATGCAGGGCGTCTCTCAGCTGCT 2006
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1818 CAAGAGGTTATGATTGGTTACTCAGATTCAGGGAAAGATGCTGGGCGTCTTTCAGCTGCT 1877
Query 2007 TGGGAGCTATACAAAGCTCAAGAAGAGCTTGTGAAGGTTGCTAAGAAATATGGAGTGAAG 2066
|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1878 TGGGAGCTTTACAAAGCTCAAGAAGAGCTTGTGAAGGTTGCTAAGGAATATGGAGTGAAG 1937
Query 2067 CTAACTATGTTCCATGGCCGTGGTGGCACAGTCGGAAGAGGAGGTGGTCCTACTCATCTT 2126
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1938 CTAACTATGTTCCATGGCCGTGGTGGCACAGTCGGAAGAGGAGGTGGTCCCACTCATCTT 1997
Query 2127 GCTATATTGTCTCAGCCACCAGATACAGTTAATGGCTCTCTTCGAGTCACGGTTCAGGGT 2186
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1998 GCTATATTGTCTCAGCCACCGGATACAGTTAATGGCTCTCTTCGAGTCACGGTTCAGGGT 2057
Query 2187 GAAGTCATTGAGCAATCATTTGGGGAGGCACACTTATGCTTTAGAACACTTCAACGTTTC 2246
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 2058 GAAGTCATTGAGCAATCATTTGGAGAGGCACACTTATGCTTTAGAACACTTCAGCGTTTC 2117
Query 2247 ACAGCAGCTACTCTAGAGCACGGAATGAACCCTCCGATTTCACCAAAACCCGAGTGGCGT 2306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2118 ACAGCAGCTACTCTAGAGCACGGAATGAACCCTCCGATTTCACCAAAACCCGAGTGGCGT 2177
Query 2307 GCTTTGCTTGATGAAATGGCGGTTGTTGCAACTGAGGAATACCGATCTGTCGTTTTCCAA 2366
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2178 GCTTTGCTTGATGAAATGGCTGTTGTTGCAACTGAGGAATACCGATCTGTCGTTTTCCAA 2237
Query 2367 GAACCTCGATTCGTCGAGTATTTCCGCCTCGCTACTCCGGAGCTGGAGTATGGACGTATG 2426
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2238 GAACCTCGATTTGTCGAGTATTTCCGCCTCGCTACTCCGGAGCTGGAGTATGGACGTATG 2297
Query 2427 AATATTGGAAGTAGACCTTCAAAGCGAAAACCAAGCGGTGGGATCGAATCTCTCCGTGCA 2486
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2298 AATATCGGAAGTAGACCTTCAAAGCGAAAACCGAGCGGTGGGATCGAATCTCTCCGTGCA 2357
Query 2487 ATCCCATGGATCTTTGCTTGGACGCAAACAAGATTCCATCTTCCTGTATGGTTAGGTTTC 2546
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2358 ATCCCATGGATCTTTGCTTGGACGCAGACAAGATTCCATCTTCCTGTATGGTTAGGTTTC 2417
Query 2547 GGAGCAGCATTTAGGTATGCGATCAAGAAGGATGTGAGAAACCTTCACATGCTGCAAGAT 2606
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2418 GGAGCAGCATTTAGGTATGCGATCAAGAAGGATGTGAGAAACCTCCACATGCTGCAAGAT 2477
Query 2607 ATGTATAAACAATGGCCCTTTTTCCGAGTCACCATCGATCTAATTGAAATGGTGTTCGCC 2666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2478 ATGTATAAACAATGGCCCTTTTTCCGAGTCACCATCGATCTAATTGAAATGGTGTTCGCC 2537
Query 2667 AAGGGAGACCCCGGGATCGCTGCTTTGTACGACAAACTTCTTGTCTCAGAAGATTTATGG 2726
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2538 AAGGGAGACCCCGGGATCGCTACTTTGTACGACAAACTTCTTGTCTCAGAAGATTTATGG 2597
Query 2727 GCTTTTGGAGAGAAACTCAGAGCCAACTTTGATGAAACCAAGAACCTCGTCCTCCAGACT 2786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2598 GCTTTTGGAGAGAAACTCAGAGCCAACTTTGATGAAACCAAGAACCTCGTCCTCCAGACT 2657
Query 2787 GCTGGACATAAAGACCTTCTTGAAGGAGATCCTTACTTGAAACAGAGACTAAGGCTACGT 2846
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2658 GCTGGACACAAAGACCTTCTTGAAGGAGATCCTTACTTGAAACAGAGACTAAGGCTACGT 2717
Query 2847 GACTCTTACATTACGACCCTCAACGTTTGCCAAGCCTACACATTGAAGAGGATCCGTGAT 2906
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2718 GACTCTTACATTACGACCCTCAACGTTTGCCAAGCCTACACATTGAAAAGGATCCGTGAT 2777
Query 2907 GCAAACTACAATGTGACTCTGCGACCACACATTTCTAAAGAGATCATGCAATCAAGCAAA 2966
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2778 TCAAACTACAATGTGACTCTGCGACCACACATTTCCAAAGAGATCATGCAATCAAGCAAA 2837
Query 2967 TCAGCACAAGAGCTCGTCAAGCTTAACCCCACGAGTGAATACGCGCCTGGACTTGAGGAC 3026
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2838 TCAGCACAAGAACTCGTCAAGCTTAACCCCACGAGTGAATACGCGCCTGGACTTGAGGAC 2897
Query 3027 ACACTTATCTTAACCATGAAGGGTATTGCTGCAGGATTGCAAAACACCGGTTAAGTGAGT 3086
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 2898 ACACTTATCTTAACCATGAAGGGAATTGCCGCAGGATTGCAAAACACCGGTTAAGTGAGT 2957
Query 3087 CAGT----GAAAGAAAACAAAACTTCGAAtctctcttttttatctac-cc--tttttaat 3139
||| ||||||||||||||||||||||||||||||||| ||||| || ||||||||
Sbjct 2958 GAGTCACTGAAAGAAAACAAAACTTCGAATCTCTCTTTTTT-TCTACTCCCCTTTTTAAT 3016
Query 3140 aatctctttttttCTAGAATCCAAAATAA------T-T-ACGGTTGGATTACAGTTTACT 3191
||||||||||||| ||| ||||||||||| | | |||||||||||||||||||||
Sbjct 3017 AATCTCTTTTTTT-TAGTATCCAAAATAAGAAAGCTGTTACGGTTGGATTACAGTTTACT 3075
Query 3192 TTATGTATCCACCGTTGAAA-TCTTAATCTTCCATTGTATCAAA-CG-TCACTGACTCTG 3248
|||||||||||||||||||| ||||||||||||||||||||||| || |||||| ||||
Sbjct 3076 TTATGTATCCACCGTTGAAAGTCTTAATCTTCCATTGTATCAAAACGATCACTGT-TCTG 3134
Query 3249 TTTCTGGAAGTGTAAACAAGAACAGAGACAGTGAATCTTAATGTTATCTTCTTTGTCTTT 3308
||| |||||||| |||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 3135 TTTTTGGAAGTGGAAACAAAAACAGAGACAATGAATCTTAATGTTATCTTCTTTGTCTTT 3194
Query 3309 TTCTTT 3314
||||||
Sbjct 3195 TTCTTT 3200
> Ahg474459 jgi|Araly1|474459|fgenesh2_kg.1__4413__AT1G53310.2
Length=3192
Score = 2998 bits (1623), Expect = 0.0
Identities = 2518/2949 (85%), Gaps = 65/2949 (2%)
Strand=Plus/Plus
Query 165 TCGGCGATAATGGCGGGTCGGAACATAGAGAAGATGGCATCTATTGATGCTCAGCTTCGG 224
|||| || ||||||| |||||| |||||||||||||||| ||||||| ||| |||||
Sbjct 66 TCGGTGAAAATGGCGTATCGGAAGTTAGAGAAGATGGCATCAATTGATGTTCATCTTCGT 125
Query 225 CAACTCGTTCCTGCTAAAGTCAGTGAAGACGATAAGCTTGTTGAGTACGATGCTCTT-CT 283
||||| ||||||| |||||| ||||||||||| |||||||||||||| |||||| || ||
Sbjct 126 CAACTGGTTCCTGGTAAAGTTAGTGAAGACGACAAGCTTGTTGAGTATGATGCT-TTGCT 184
Query 284 CCTTGATCGCTTTCTCGACATTCTCCAGGATTTACACGGCGAGGATCTCCGTGAAACGGT 343
|| ||||| |||||||| |||||||||||||| ||||| || |||||||||||||| ||
Sbjct 185 TCTAGATCGGTTTCTCGATATTCTCCAGGATTTGCACGGTGAAGATCTCCGTGAAACTGT 244
Query 344 TCAAGAG-TTATACGAGCTTTCTGCTGAGTATGAAGGGAAGCGTGAGCCT-AGCAAGCTT 401
||||||| || || |||| |||||| || |||||||| |||| ||| ||| || |||||
Sbjct 245 TCAAGAGCTT-TATGAGCATTCTGCAGAATATGAAGGAAAGCATGAACCTAAG-AAGCTA 302
Query 402 GAGGAGCTAGGGAGTGTCCTAACGAGTTTGGATCCTGGTGACTCAATTGTTATCTCCAAG 461
||||||||||| | | | ||||||||||| ||||| || ||||| ||||||||| | ||
Sbjct 303 GAGGAGCTAGGAAATTTGCTAACGAGTTTAGATCCAGGAGACTCCATTGTTATCGCTAAA 362
Query 462 GCTTTCTCTCACATGCTTAACTTAGCCAATTTGGCTGAGGAGGTGCAGATTGCTCACCGT 521
||||| ||||||||||||||||||||||||||||| ||||| |||||||||||| |||||
Sbjct 363 GCTTTTTCTCACATGCTTAACTTAGCCAATTTGGCCGAGGAAGTGCAGATTGCTTACCGT 422
Query 522 CGCAGGATCAAGAAGCTGAAGAAAGGTGATTTCGTTGATGAGAGTTCTGCAACTACTGAA 581
|| ||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||
Sbjct 423 CGTAGGATCAAGAAGCTGAAGAAAGGTGATTTTGTTGATGAGAGCTCTGCTACTACTGAA 482
Query 582 TCCGATATTGAAGAGACTTTTAAGAGGCTCGTTTCG-GATCTTG-GTAAGTCTCCTGAAG 639
|| ||| ||||||| ||||| |||| ||| | || | |||| || |||||||||| |||
Sbjct 483 TCTGATCTTGAAGAAACTTTCAAGAAGCTTG-TTGGAGATC-TGAATAAGTCTCCTCAAG 540
Query 640 AGATCTTTGATGCCT-TGAAGAATCAGACTGTGGATCTGGTTTTGACTGCTCATCCTACT 698
|||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 541 AGATCTTTGATG-CTCTGAAGAATCAGACTGTGGATTTGGTTTTGACTGCTCATCCTACT 599
Query 699 CAGTCTGTGCGTAGATCATTGCTTCAGAAGCATGGGAGGATAAGGGACTGTCTTGCTCAA 758
||||||||| | ||||||||||||||||| |||||||||||||| |||||||| ||||||
Sbjct 600 CAGTCTGTGAGAAGATCATTGCTTCAGAAACATGGGAGGATAAGAGACTGTCTGGCTCAA 659
Query 759 CTCTATGCAAAGGACATTACTCCTGATGACAAGCAGGAGCTAGATGAGTCTCTGCAAAGA 818
|| ||||| ||||| |||||||||||||||||||| ||||| |||||| |||| || |||
Sbjct 660 CTTTATGCCAAGGATATTACTCCTGATGACAAGCAAGAGCTCGATGAGGCTCTTCAGAGA 719
Query 819 GAGATTCAAGCTGCATTCCGAACAGATGAGATTAGAAGAACACCTCCAACCCCACAAGAT 878
||||||||||| ||||||||||||||||| || | ||||||||| || || || ||||||
Sbjct 720 GAGATTCAAGCGGCATTCCGAACAGATGAAATCAAAAGAACACCACCGACTCCTCAAGAT 779
Query 879 GAAATGAGAGCTGGAATGAGTTATTTCCACGAGACAATCTGGAAAGGTGTCCCCAAG-TT 937
|| |||||||| ||||||||||||||||| || || |||||||||||||| || ||| ||
Sbjct 780 GAGATGAGAGCAGGAATGAGTTATTTCCATGAAACTATCTGGAAAGGTGTTCCTAAGTTT 839
Query 938 CTTGCGCCGTGTGGACACAGCTCTGAAAAACATTGGGATTGATGAACGTGTTCCTTACAA 997
||| |||||||| ||||||||| |||||||||| |||||||| ||||||||||| || ||
Sbjct 840 CTT-CGCCGTGTAGACACAGCTTTGAAAAACATAGGGATTGAAGAACGTGTTCCATATAA 898
Query 998 TGCCCCATTGATTCAATTCTCTTCGTGGATGGGCGGTGATCGTGATGGTAATCCGAGGGT 1057
||| |||||||||||||||||||| |||||||| |||||||||||||||||||| |||||
Sbjct 899 TGCTCCATTGATTCAATTCTCTTCTTGGATGGGTGGTGATCGTGATGGTAATCCAAGGGT 958
Query 1058 CACACCTGAGGTCACTAGAGATGTGTGCTTGTTGGCTAGAATGATGGCTGCCAATCTCTA 1117
|||||||| ||||| |||||||| |||||||| ||||||||||||||||| | | | ||
Sbjct 959 TACACCTGAAGTCACCAGAGATGTTTGCTTGTTAGCTAGAATGATGGCTGCTACTATGTA 1018
Query 1118 CTATAACCAAATCG-AGAATCTGATGTTTGAGTTATCTATGTGGCGTTGCACTGATGAAT 1176
|| ||||||||||| || |||| ||||||||| | |||||||||||||||| ||| ||
Sbjct 1019 CTTTAACCAAATCGAAG-ATCTTATGTTTGAGATGTCTATGTGGCGTTGCAATGACGAGC 1077
Query 1177 TCCGTGTGCGGGCGGATGAACTGCACAG-GAACTCAAGGAAAGATGCTGCAAAACATTAC 1235
| |||||||| || |||||||| ||| | || || || ||||||||||| |||||||||
Sbjct 1078 TGCGTGTGCGAGCTGATGAACTTCAC-GCAAATTCGAGAAAAGATGCTGCGAAACATTAC 1136
Query 1236 ATAGAATTCTGGAAGACAATTCCTCCAACTGAGCCATACCGTGTGATTCTTGGTGATGTG 1295
||||||||||||||| |||||||| |||| ||||||||||||||||||||||| |||||
Sbjct 1137 ATAGAATTCTGGAAGTCAATTCCTACAACCGAGCCATACCGTGTGATTCTTGGCGATGTA 1196
Query 1296 AGGGATAAGCTGTATCACACACGTGAGCGTTCCCGCCAATTGCTGAGTAATGGA-ATCTC 1354
||||| ||||| |||||||||||||| || | | |||||||| || |||||| | |||
Sbjct 1197 AGGGACAAGCTTTATCACACACGTGAACGCGCTCATCAATTGCTCAGCAATGGACA-CTC 1255
Query 1355 GGATATTCCTGAAGAAGCTACCTTCACTAA-TGTGGAACAGTTCTTGGAGCCTCTTGAGC 1413
||| | |||| ||| ||||| |||| ||| | |||||||||||||||| ||||||||||
Sbjct 1256 TGATGTCCCTGTAGAGGCTACTTTCATTAACT-TGGAACAGTTCTTGGAACCTCTTGAGC 1314
Query 1414 TCTGTTACCGATCACTATGTTCATGTGGTGACAGCCCGATAGCTGATGGAAGCCTTCTTG 1473
||||||||||||| || ||||||||||| ||| | || ||||| ||||||||||||||||
Sbjct 1315 TCTGTTACCGATCTCTGTGTTCATGTGGCGACCGTCCAATAGCAGATGGAAGCCTTCTTG 1374
Query 1474 ATTTCTTGAGGCAAGTCTCTACCTTTGGACTCTCCCTTGTGAGACTTGACATCAGGCAAG 1533
|||| |||||||||||||| |||||||| ||||| ||||||||||||||||| |||||||
Sbjct 1375 ATTTTTTGAGGCAAGTCTCAACCTTTGGGCTCTCTCTTGTGAGACTTGACATAAGGCAAG 1434
Query 1534 AGTCTGAACGCCACACAGATGTCTTGGATGCTATCACCA-AGCACTTGGACATCGGTTCC 1592
| ||||| |||||||| ||||| |||||||||||||||| | || || || |||||
Sbjct 1435 AATCTGACCGCCACACCGATGTATTGGATGCTATCACCACA-CATTTAGATATCGG---A 1490
Query 1593 TCCTATAGAGACTGGTCTGAAGAAGGCCGACAGGAATGGCTTCTT-GCTGAACTAAGCGG 1651
||||| ||||| |||||||||||| | || || ||||||||| || |||| ||||| ||
Sbjct 1491 TCCTACAGAGAATGGTCTGAAGAACGTCGCCAAGAATGGCTT-TTATCTGAGCTAAGTGG 1549
Query 1652 CAAACGTCCACTTTTCGGACCTGATCTTCCCAAAACCGAAGAAATTTCTGATGTCCTGGA 1711
||||||||| |||||||| |||||||||| |||||||||||||| ||||||| |||||
Sbjct 1550 CAAACGTCCGCTTTTCGGTTCTGATCTTCCTAAAACCGAAGAAATAGCTGATGTTCTGGA 1609
Query 1712 CAC-ATTCAAAGTCATATCTGAGCTGCCTTCAGATTGTTTTGGAGCTTATATTATCTCTA 1770
||| ||| | |||||| | ||||| || |||| | ||||| ||||| ||||||||||
Sbjct 1610 CACGTTTC-ATGTCATAGCAGAGCTACCAGCAGACAGCTTTGGTGCTTACATTATCTCTA 1668
Query 1771 TGGCAACTTCA-CCTAGTGATGTGCTT-GCGGTTGAGCTTTTACAGCGCGAATGCCATGT 1828
|||||||| || ||| |||||| || || ||||||||||||||||| ||||||| |||
Sbjct 1669 TGGCAACTGCACCCT-CTGATGT-ATTAGCTGTTGAGCTTTTACAGCGTGAATGCCGTGT 1726
Query 1829 GAAAAATCCACTT-AGAGTTGTTCCACTCTTTGAGAAGCTAGCTGATCTTGAAGCAGCTC 1887
|||| | || || ||||||||||| ||||||||||||||||| ||||| ||||||||||
Sbjct 1727 GAAACAGCC-TTTGAGAGTTGTTCCGCTCTTTGAGAAGCTAGCGGATCTGGAAGCAGCTC 1785
Query 1888 CTGCCGCTGTTGCAAGACTCTTTTCTATAGACTGGTACAAAAACCGTATTAACGGTAAAC 1947
|||| || ||||| || ||||||||| | || |||||||| ||||||||||||||||| |
Sbjct 1786 CTGCTGCAGTTGCTAGGCTCTTTTCTGTTGATTGGTACAAGAACCGTATTAACGGTAAGC 1845
Query 1948 AAGAGGTTATGATTGGTTACTCAGATTCAGGGAAAGATGCAGGGC-GTCTCTCAGCTGCT 2006
||||||||||||||||||| || |||||||||||||| || || | || | || ||||||
Sbjct 1846 AAGAGGTTATGATTGGTTATTCGGATTCAGGGAAAGACGCTGGACGGT-TATCCGCTGCT 1904
Query 2007 TGGGAGCTATACAAAGCTCAAGAAGAGCTTGTGAAGGTTGCTAA-GAAATATGGAGTGAA 2065
||| || ||||||||||||||||||||||||||||||||||||| || || || |||||
Sbjct 1905 TGGCAGTTATACAAAGCTCAAGAAGAGCTTGTGAAGGTTGCTAAAGAG-TACGGTGTGAA 1963
Query 2066 GCTAACTATGTTCCATGGCCGTGGTGGCACAGTCGGAAGAGGAGGTGGTCCTACTCATCT 2125
|||||| ||||| || || |||||||| || || ||||||||||| || || || |||||
Sbjct 1964 GCTAACAATGTTTCACGGTCGTGGTGGTACGGTTGGAAGAGGAGGCGGACCGACCCATCT 2023
Query 2126 TGCTATATTGTCTCAGCCACCAGATAC-AGTTAATGGCTCTCTTCGAGTCACGGTTCAGG 2184
|||||||||||||||||| || ||||| | |||| || || || || ||||||||||| |
Sbjct 2024 TGCTATATTGTCTCAGCCTCCGGATACTA-TTAACGGTTCGCTCCGTGTCACGGTTCAAG 2082
Query 2185 GTGAAGTCATTGAGCAATCATTTGGGGAGGCA-CACTTATGCTTTAGAACACTTCAACGT 2243
|||||||||| |||||||| ||||| || | | || |||||||||||||||||||| |||
Sbjct 2083 GTGAAGTCATCGAGCAATCGTTTGGTGAAG-AGCATTTATGCTTTAGAACACTTCAGCGT 2141
Query 2244 TTCACAGCAGCTACTCTAGAGCACGGAATGAACCCTCCGATTTCACCAAAACCCGAGTGG 2303
||||| || ||||| || |||||||| ||| ||||| ||||| || ||||| || |||
Sbjct 2142 TTCACCGCTGCTACACTCGAGCACGGTATGCGTCCTCCAATTTCGCCTAAACCAGAATGG 2201
Query 2304 CGTGCTTTGCTTGATGAAATGGCGGTTGTTGCAACTGAGGAATACCGATCTGTCGTTTTC 2363
|| ||||||||||||||||||||||| |||||||| ||||| || || ||||| || |||
Sbjct 2202 CGCGCTTTGCTTGATGAAATGGCGGTCGTTGCAACAGAGGAGTATCGTTCTGTTGTGTTC 2261
Query 2364 CAAGAACCTCGATTCGTCGAGTATTTCCGCCTCGCTACTCCGGAGCTGGAGTATGGACGT 2423
||||||||||| || |||||||| |||||||| ||||| ||||| || |||||||| |||
Sbjct 2262 CAAGAACCTCGGTTTGTCGAGTACTTCCGCCTTGCTACACCGGAACTAGAGTATGGTCGT 2321
Query 2424 ATGAATATTGGAAGTAGACCTTCAAAGCGAAAACCAAGCGGTGGGATCGAATCTCTCCGT 2483
||||| |||||||| |||||||| ||||| |||||||| ||||| || ||||||||||||
Sbjct 2322 ATGAACATTGGAAGCAGACCTTCGAAGCGTAAACCAAGTGGTGGCATTGAATCTCTCCGT 2381
Query 2484 GCAATCCCATGGATCTTTGCTTGGACGCAAACAAGATTCCATCTTCCTGTATGG-TTAGG 2542
|| || ||||||||||| |||||||| ||||||||||||||||| ||||||||| || ||
Sbjct 2382 GCTATTCCATGGATCTTCGCTTGGACTCAAACAAGATTCCATCTCCCTGTATGGCTT-GG 2440
Query 2543 -TTTCGGAGCAGC-ATTTAGGTATGCGATC-AAGAAGGATGTGA-GAAACCTTCACATGC 2598
||| ||| |||| ||| || | | |||| || ||| |||| | ||| ||| || ||||
Sbjct 2441 ATTT-GGATCAGCGATT-AGACACGTGATCGAAAAAG-ATGTCAAGAA-CCTCCATATGC 2496
Query 2599 TGCAAGATATGTATAAACAATGGCCCTT-TTTCCGAGTCACCATCGATCTAATTGAAATG 2657
| ||||||||||| |||| ||||| || ||| |||||||||| ||||| |||||||||
Sbjct 2497 TCCAAGATATGTACCAACACTGGCCTTTCTTTA-GAGTCACCATTGATCTCATTGAAATG 2555
Query 2658 GTGTTCGCCAAGGGAGACCCCGGGATCGCTGCTTTGTACGACAAACTTCTTGTCTCAGAA 2717
|||||||| || ||||| |||||||| |||||||||||||| || |||||||| |||||
Sbjct 2556 GTGTTCGCTAAAGGAGATCCCGGGATTGCTGCTTTGTACGATAAGCTTCTTGTTTCAGAG 2615
Query 2718 GATTTATGGGCTTTTGGAGAGAAACTCAGAGCCAACTTT-GATGAAACCAAGAACCTCGT 2776
|| | ||| ||||||| |||||||||||||| || ||| || ||||||||||| ||| |
Sbjct 2616 GAACTCTGGCCTTTTGGTGAGAAACTCAGAGCTAA-TTTCGAAGAAACCAAGAAACTCAT 2674
Query 2777 CCTCCAGACTGCTGGACATAAAGACCTTCTTGAAGGAGATCCTTACTTGAAACAGAGACT 2836
||| ||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 2675 CCTGCAGACCGCTGGACACAAAGATCTTCTTGAAGGAGATCCTTACTTGAAACAGAGACT 2734
Query 2837 AAGGCTACGTGACTCTTACATTACGACCCTCAACGTTTGCCAAGCCTACACATTGAAGAG 2896
|| || ||||| |||||||||||||| ||||| || || ||||| ||||||||||||||
Sbjct 2735 GAGACTCCGTGATTCTTACATTACGACTCTCAATGTCTGTCAAGCTTACACATTGAAGAG 2794
Query 2897 GATCCGTGATGCAAACTACAATGTGACTCTGCGACCACACATTTCTAAAGAGATCATGC- 2955
||||||||| ||| ||| |||||||||||||||| ||||| | ||| ||||| | ||
Sbjct 2795 AATCCGTGATCCAAGTTACCATGTGACTCTGCGACCTCACATCTGTAAGGAGAT-A-GCG 2852
Query 2956 -AATCAAGCAAATCAGCACAAGAGCTCGTCAAGCTTAACCCCACGAGTGAATACGCGCCT 3014
|||| |||||| |||||||||| ||| || |||||||||| ||||| ||||| || |||
Sbjct 2853 GAATCGAGCAAACCAGCACAAGAACTCATCGAGCTTAACCCGACGAGCGAATATGCACCT 2912
Query 3015 GGACTTGAGGACACACTTATCTTAACCATGAAGGGTATTGCTGCAGGAT-TGCAAAACAC 3073
|||||||| || || || ||||| |||||||||||||||||||| || | | ||||||||
Sbjct 2913 GGACTTGAAGATACTCTCATCTTGACCATGAAGGGTATTGCTGCTGG-TCTACAAAACAC 2971
Query 3074 CGGTTAAGT 3082
|||||||||
Sbjct 2972 CGGTTAAGT 2980
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 125095242451
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5