BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G15095.1
Length=2302
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478940 jgi|Araly1|478940|fgenesh2_kg.3__1641__AT3G15095.1 3221 0.0
> Ahg478940 jgi|Araly1|478940|fgenesh2_kg.3__1641__AT3G15095.1
Length=2300
Score = 3221 bits (1744), Expect = 0.0
Identities = 2159/2344 (92%), Gaps = 90/2344 (4%)
Strand=Plus/Plus
Query 1 GTGATCAGTCAAAGATGATTACATAGATTTAGGAAGAAGGAA--TCTCTTACCCTAACT- 57
||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 1 GTGATTAGTCAAAGATGATTACATAGATTTAGGAAGAAGGAATCTCTCTTACCCTAA-TC 59
Query 58 AGATCCAGGGGTATTTTAGTAAATTATCATAGGTA--CCCCTAAAAGTCTCTCGATTCCG 115
||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||
Sbjct 60 AGATCCAGGGGTATTTTAGTAAATTATCATAGGGACCCCCCTAAGTCTCTCTCGATTCCG 119
Query 116 TTACACTCTCAATA--TCTCTCCAATGGCTATGGTTACTACTACACtcttcttcttcttc 173
|||||||||||||| ||||||||||||| ||||||||||||||| | ||||||||
Sbjct 120 TTACACTCTCAATATCTCTCTCCAATGGCGATGGTTACTACTACA-----C-TCTTCTTC 173
Query 174 ttcttcttcttctccttcttctCACTGTaaaaaagaaaaaaaaaTGGCGGAAACTGAGAG 233
||||||||| || | | | | | || ||| ||||||||||||||||||||||||
Sbjct 174 TTCTTCTTC-TC-AC-TGTAAAAAAAG--AAGAAGCAAAAAAAATGGCGGAAACTGAGAG 228
Query 234 ACCCCACCGGTCTTCAAGTATTAACAGTAGTAGCAACAACAACAGTGGTTCATCAACCGA 293
||||||||| ||||||||||||||| ||||||| |||| | | |||||| || |||||
Sbjct 229 ACCCCACCGTTCTTCAAGTATTAAC---AGTAGCAGCAAC-A-A-TGGTTCTTCTACCGA 282
Query 294 TCTATTCATTTGTTTCACATCTCGTTTCTCTTCTTCTTCCTCTATGCGTCTCTCTTCTAA 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 283 TCTATTCATTTGTTTCACATCTCGTTTCTCTTCTTCTTCCTCTATGCGTCTCTCTTCCAA 342
Query 354 ATCCATCCATAGCCCAGCTCGTTCCGCTTGTCTCACCACTTCTCTTAGCCGTCGTCTCCG 413
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 343 ATCCATCCATAGTCCAGCTCGTTCCGCTTGTCTCACTACTTCTCTTAGCCGTCGTCTCCG 402
Query 414 TACTAGCGGTAGCTTGAAGAACGCTTCAGCTGGAGTTTTGAACTCTCCCATGTTTGGTGC 473
|||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||
Sbjct 403 TACTAGCGGTAGCTTGAAGAACGCTTCAGCCGGACTTTTGAACTCTCCGATGTTTGGTGC 462
Query 474 TAATGGAGGACGGAAGAGATCTGGATCTGGCTACGAGAATAGTAACAACAACAACAATAA 533
|||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||
Sbjct 463 TAATGGAGGACGGAAGAGATCTGGATCTGGTTACGAGAATAGTAGCAACAACAAC---AA 519
Query 534 TAACATAGAGCCGTCGTCTCCGAAGGTGACGTGTATTGGTCAAGTTAGAGTGAAGACTAG 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 520 TAACATAGAGCCGTCGTCTCCGAAGGTGACGTGTATTGGTCAAGTTAGAGTGAAGACTAG 579
Query 594 GAAGCATGTGAAGAAGAAGATGAGAGCTAGATCTAGAAGGAAAGGAGGTGAGAATAGTTT 653
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 580 GAAGCATGTGAAGAAGAAGATGAGAGCTAGATCTAGGAGGAAAGGAGGTGAGTCGAGTTT 639
Query 654 CAGGAGATCCGTTGATCAAAACGAC------GGTGGT---GGTGGATGTCGTTTTAAAGC 704
|||||||||||||||||||||||| |||||| ||||||||||||||| | ||
Sbjct 640 TAGGAGATCCGTTGATCAAAACGACGGTGGTGGTGGTGGAGGTGGATGTCGTTTTGATGC 699
Query 705 GAGTGAGAATCGTTTGGTGCATCTTCCGGTGACTATCTGCGAGTCGTTGAGATCGTTTGG 764
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 700 GAGTGAGAATCGTTGGGTGCATCTTCCGGTGACTATCTGCGAGTCGTTGAGATCGTTTGG 759
Query 765 GTCTGAGCTCAACTGCTTCTTCCCGTGTCGATCTTCCTGTACGGAGAATAGTCATGGAGA 824
|||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||
Sbjct 760 GTCTGAGCTCAACTGCTTCTTCCCTTGTAGATCTTCGTGTACGGAGAATAGTCATGGAGA 819
Query 825 TGGGAGGAGAGCTGAGAGTAACAACGACGGTTGCGGCGGCGGCGGAGGAGGAAGTAATTC 884
||||||| ||| |||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 820 TGGGAGGCGAGTTGAGAGTAACAACGACGGTTGCGGCGGCGGAGGAGGAGGAAG---TTC 876
Query 885 GTGTGGTGCGGTGTTTACGAGGTGGTTTGTGGCGGTGGAGGAGACTTCGGGAGGGAAGAG 944
|||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 877 GTGTGGTGCGATGTTTACGAGGTGGTTTGTGGCGGTGGAGGAGACGTCGGGTGGGAAGAG 936
Query 945 AAGAGAGATTGAGCTTGTTGTTGGTGGAGAAGACGAAGTTGAGGAGGATAGGCGGAGGAG 1004
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 937 AAGAGAGATTGAGCTTGTAGTTGGTGGAGAAGACGAAGTGGAGGAGGATAGGCGGAGGAG 996
Query 1005 TCGTCGGAGACATGTTTTCGAGGGGCTTGATTTAAGTgagatagagatgaagacggagaa 1064
||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||
Sbjct 997 TCGTCGGAGACATGTTTTCGAGGGGCTTGATCTGAGTGAGATTGAGATGAAGACGGAGAA 1056
Query 1065 g-aa-agaga-gaggagaagaagTTGGACGGATGAGTATTTGTTCTCCGCCGAAGAATGC 1121
| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1057 GAAAGAGAGAGGAGGAGAAGAAGTTGGACGGATGAGTATTTGTTCTCCGCCGAAGAATGC 1116
Query 1122 TTTGTTGTTGATGCGGTGTAGATCTGATCCGGTTAAGGTTGCGGCGTTAGCTAACCGGGT 1181
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1117 TTTGTTGTTGATGCGGTGTAGATCAGATCCGGTTAAGGTGGCGGCGTTAGCTAACCGGGT 1176
Query 1182 TCGTGAAAGACAGTTGTCGTTAAACGACGGCGTATAC---------ACAGAGGAGGAAGA 1232
|||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 1177 TCGTGAAAGACAATTGTCGTTAAACGACGGCGTATACGGAGGAGGAACAGAGGAGGAAGA 1236
Query 1233 AGATGAGAGAAGAAGAAGGTTTGAGCTGGAAATTGAAGATAAGAAACGGATCGACTTGTG 1292
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1237 TGATGAGAGAAGAAGAAGGTTTGAGCTGGAAATTGAAGATAAGAAACGGATCGACTTGTG 1296
Query 1293 TGAGAAATGGATCTCTGGTGAGACTACTGTGGAAAcagaagaagtttcag-tagcagttg 1351
||||||||||||||| ||||| |||| |||||| |||||||||||||||| || |||||
Sbjct 1297 TGAGAAATGGATCTCCGGTGAAACTAATGTGGAGACAGAAGAAGTTTCAGTTA-CAGTT- 1354
Query 1352 cagaagcagaagcagaagcagaagcagaagcTCCTTTGCCTTCAAATCCAGCTACAGAGG 1411
||||||||||||| || | || | ||||||||||||||||||||||||||||
Sbjct 1355 -----GCAGAAGCAGAAGTAG-A--AG-TG--CCTTTGCCTTCAAATCCAGCTACAGAGG 1403
Query 1412 AAGAAGAAAGAGTCAAAGTTGTGGAAGATTCGATTGTTGAAGAAGAAC----A-A-GAAG 1465
|||||||||||||||||| ||| ||||||||||||||||||||||||| | | ||||
Sbjct 1404 AAGAAGAAAGAGTCAAAGCTGTTGAAGATTCGATTGTTGAAGAAGAACAAGAAGACGAAG 1463
Query 1466 CTTCGAAAATTCTGGATTCGTTTGAGGAAGAAATAGAAGCTACGATCATGaaaaaaaTTG 1525
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||
Sbjct 1464 CTTCGAAAATTCTGGATTCGGTTGAGGAAGAAATTGAAGCTACGATCATGAAAAACATTG 1523
Query 1526 AAGACGAAATCAGAAACGCTATAGAAGAAGAGGAGAAACTTGCTGAGATGGAAGAATTAG 1585
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1524 AAGACGAAATCAGAAACGCTATAGAAGAAGATGAGAAACTGGCTGAGATGGAAGAATTAG 1583
Query 1586 CGGTTGTGGCGGTGGCTGAGACGGAGGAGGTAGAAGAAAGCAAAGAGG-T--TGTTCCTG 1642
||| ||||||||||||||||||||||||| |||||||| |||||||| | |||| |||
Sbjct 1584 CGGCGGTGGCGGTGGCTGAGACGGAGGAGGAAGAAGAAAACAAAGAGGTTGCTGTTGCTG 1643
Query 1643 ATTGTATACCTCAAAATGAGGAAAGATCCGAACAAGGAAACCGGGAACCCGACCCGAGTC 1702
|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1644 CCTGTATAACTCAAAATGAGGAAAGATCCGAACAAGGAAACCGAGAACCCGACCCGAGTC 1703
Query 1703 CGGAAGTGGTGATGAGAAGAAGTCTACAAGAGGAAACAACGGAGAAAGAGAAGACGACGG 1762
|||||||||||||||||||||||||||||||||||| ||||||| || || ||| | ||
Sbjct 1704 CGGAAGTGGTGATGAGAAGAAGTCTACAAGAGGAAAAAACGGAG-AA-AG-AGA--A-GG 1757
Query 1763 CGACGCCGTATAAGGTGTTACCGGATTGTTTGCTGCTTATGATGTGTGAACCAAAGCTCT 1822
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1758 CGACGCCGTATAAGGTGTTACCGGATTGTTTGCTGCTAATGATGTGTGAACCAAAGCTAT 1817
Query 1823 CAATGGAAGTCTCTAAGGAGACTTGGGTTTGCAGTACAGATTTCGTCAGATGTTTACCAG 1882
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1818 CAATGGAAGTCTCTAAGGAGACTTGGGTTTGCAGTACAGATTTCGTCAGATGTTTACCAG 1877
Query 1883 GAAGACCTCCGGCGAAGAAGATACCACCAGAAGCCGTCGGAGA-CA--ATCATCATCATC 1939
||||||||||||||||||||||||| |||||||| |||||| | ||||||||||||
Sbjct 1878 GAAGACCTCCGGCGAAGAAGATACCTCCAGAAGCTACCGGAGATAATCATCATCATCATC 1937
Query 1940 ATCAACCCAAGAAGCGAATCGTCACAGCCGTTGATTCCAACGCATCCTCTCGCCGGCGGT 1999
|||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||
Sbjct 1938 ATCAACCCAAGAAGCGGATCGTCACGGCCGTTGATTCCAACGCATCTTCTCGCCGGCGGT 1997
Query 2000 CAATCGATAGACCACCACTT-CACCTACAGCCGCCACGGTCATCGTGTTCATACCCAGCA 2058
||||||||| |||||| ||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 1998 CAATCGATAAACCACC-CTTACACCTTCAGCCGCCACGGTCATCGTGTTCATACCCAGCA 2056
Query 2059 GCTCCACCGATAATAACGGCAGCTGCGGCGGTTGGGGAACAGAGGGTAGCCGGAGCTAAT 2118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2057 GCTCCACCGATAATAACGGCAGCTGCGGCGGTTGGGGAACAGAGGGTAGCCGGAGCTAAT 2116
Query 2119 AAGG--TAC-AGCCACCAGTGCTGCCACGTTGCAAATCGGAACCGAGGAAGTCAGCGTCG 2175
|||| ||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 2117 AAGGCGTACGAGCCACCAGTGCTGCCACGTTGCAAATCGGAGCCGAGAAAGTCAGCGTCG 2176
Query 2176 AAGCTAGCGCCGGAAGCTTGTTTCTGGAAAAATAGGAAGCTTGAGCCACACCCTCCGGCA 2235
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2177 AAGCTAGCGCCGGAAGCTTGTTTCTGGAAAAATAGGAAGCTCGAGCCACACCCTCCGGCA 2236
Query 2236 ACCGTCGGTGTCGGCGGCGCCGGAGTAGGGTTCTAGAAGAA-GGAGACGTGAGTGGGAAT 2294
|||||||| |||||||| ||||||||||||||||||||||| || |||||||||||||||
Sbjct 2237 ACCGTCGGAGTCGGCGGTGCCGGAGTAGGGTTCTAGAAGAAAGGGGACGTGAGTGGGAAT 2296
Query 2295 AAAG 2298
||||
Sbjct 2297 AAAG 2300
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86693397620
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5