BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G15110.1
Length=937
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478942 jgi|Araly1|478942|fgenesh2_kg.3__1643__AT3G15110.1 1408 0.0
> Ahg478942 jgi|Araly1|478942|fgenesh2_kg.3__1643__AT3G15110.1
Length=942
Score = 1408 bits (762), Expect = 0.0
Identities = 889/948 (94%), Gaps = 17/948 (2%)
Strand=Plus/Plus
Query 1 ATCTTTCGACGGCTAAGAAAATGTTAGTGTTGCAGAGCCACCAATGTCTCTTCTCTCTCC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1 ATCTTTCGACGGCTAAGAAAATGTTAGTGTTGCAGAGCCACCAATGTCTCTTCACTCTCG 60
Query 61 CTTACCGTCTCCGTCCAACGCGTCTTATCTCTCCAATCCATTCGCTCTCTTCCTTTACCA 120
|| ||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 61 CTCACCGTCTCCGTCCGACGCGTCTTATCTCTCCAATCCATTTGCTCTCTACCTTTACCC 120
Query 121 GGATCCGTCCCGGTATAATCCGATTATCCGCCGTAAAAGAAATCGCCGATGTGGCGGAGG 180
||||||| |||| || |||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 121 GGATCCGACCCGATAGAATCCGGGTATTCGCCGTAAAAGAAATCGCCGATGTGGCGGAGG 180
Query 181 TGGAAGAAGATGGTCCAATTGAGCTTCCTACGTCGTCCACGTCTCCGTTTTCGTCTACTA 240
||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |
Sbjct 181 TGGAAGAAGATGGTCCAATTGAGCTACCTCCGTCGTCCACGTCTCCGTTTTCGTCTACGA 240
Query 241 ACTCCATTTTCGCCACTTCCGATGATCCTACTCCTCTCCAATTGGCCACCAGTGTGCTTC 300
||||||||||||||||||||||||| |||||||||||||| || ||||| || |||||||
Sbjct 241 ACTCCATTTTCGCCACTTCCGATGACCCTACTCCTCTCCAGTTAGCCACTAGCGTGCTTC 300
Query 301 TTACCGGTGCCATCACTGTCTTCCTCATCCGCTCCGTTCGACGGCGCGCTAAACGCGCCA 360
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 301 TAACCGGTGCCATCACTGTCTTCCTCATCCGCTCGGTTCGACGGCGCGCTAAACGCGCCA 360
Query 361 AAGAGCTGACATTTAGATCTACTGGAGCTAAGAAATCGTTGAAAGAAGAAGCAATGGATA 420
||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 361 AAGAGCTGAGATTTAGATCTACTGGAGCAAAGAAATCGTTGAAAGAAGAGGCAATGGATA 420
Query 421 ATCTAAAAGCGTTAAGTTCAACTCCGATAGAAGGTGGTAATTCAACTCCATCGGCGGCTC 480
|||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 421 ATCTGAAAGCGTTGGGTTCAACTCCGATAGAAGGTGGTAACTCAACTCCATCGGCGGCTC 480
Query 481 AGGCGTTTCTTGGTGCGATAGCCGCAGGAGTCATTGCTCTCATTCTTTACAAATTCACTG 540
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 481 AGGCGTTTCTTGGTGCGATAGCTGCAGGAGTCATTGCTCTCATTCTTTACAAATTCACTG 540
Query 541 TTACAGTTGAATCAGGACTCAATCGTCAGACTATCTCTGATAACTTCTCGGTTAGGCAAA 600
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 541 TTACAGTTGAATCAGGACTCAATCGCCAGACTATCTCTGATAACTTCTCGGTTAGGCAAA 600
Query 601 TCACGGTAACCGTAAGGACTATCATCAACGGTATATGCTATCTAGCAACATTTGTTTTCG 660
|||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 601 TCACAGTCACCGTAAGGACTATCATCAATGGTATATGCTATCTAGCAACATTTGTTTTCG 660
Query 661 GTCTCAACGCGTTCGGACTTCTCCTTTACTCTGGTCAATTAGCCTTCAATGAAGATTCTG 720
||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 661 GTCTCAACGCGTTTGGACTTCTCCTTTACGCTGGTCAATTAGCCTTCAATGAAGATTCTG 720
Query 721 CTGAAGAAAACATGAAGGCCACAACACAACCTGGAGACTCATCATCAGGTGACAACAGTG 780
|||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 721 ATGAAGA---CATGAAGGCCACAACACAACCTGGAGACTCATCA---GGTGACAACAGTG 774
Query 781 AAGTAAATAAAAGCAATGAGGATCAAAGTTCAGGTGATTGATTAGTCCGGTCTTT--A-- 836
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 775 AAGTAAATAAAAGCAATGAGGATCAAAGTTGAGGTGATTGATTAGTCCGGTCTTTGTATT 834
Query 837 ----CTATGAAACATGTATTAATAATATCATATTCATGTAGCCAACTATGCATAAAATTG 892
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 835 TGTACTATGAAACATGTATTAATAATATCATATTCATGTAGCCAACTATGTATAAAATTG 894
Query 893 TTTTCTTCTTTT-CAATTTATTGTA-AC-TATCTATCTGTTTGTTGGG 937
||| |||||||| |||||||||||| || |||||||| ||||||||||
Sbjct 895 TTTCCTTCTTTTTCAATTTATTGTACACCTATCTATCCGTTTGTTGGG 942
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34768100304
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5