BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G15115.1
Length=1384
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478943 jgi|Araly1|478943|fgenesh2_kg.3__1644__AT3G15115.1 1613 0.0
Ahg474441 jgi|Araly1|474441|fgenesh2_kg.1__4395__AT1G53180.1 78.7 1e-13
> Ahg478943 jgi|Araly1|478943|fgenesh2_kg.3__1644__AT3G15115.1
Length=1320
Score = 1613 bits (873), Expect = 0.0
Identities = 1169/1301 (90%), Gaps = 63/1301 (5%)
Strand=Plus/Plus
Query 1 GGTTGCCCACATGGGCACCTCCT-AATAAGTCCCCAGAATCTATGCTTCAAATacaaaac 59
||||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||
Sbjct 1 GGTTGCCCACATGGGCACCTCCTAAATAAGTCTCCAGAATCTATGCTTCAAATAC-AAAC 59
Query 60 cgaacaaaagaagaagaagaagaaacaagaacacaaacTTATCTCTTTATGTTATCTTTT 119
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 60 CGAACAAAAGAAGAAGAAGAAGAAACAAGAACACAAACTTATCTCTTTTTGTTATCTCTT 119
Query 120 GTCTGAATTaaaaaaaaaaTGGATTCTACTTCGAATGATCATCAAGAGTTGGAACAATTC 179
||||||||| |||||||||||||||||| ||||||||||||||| ||||| ||||||
Sbjct 120 GTCTGAATT----AAAAAATGGATTCTACTTGGAATGATCATCAAGAATTGGAGCAATTC 175
Query 180 GAAGCCATTGATGATCTCCTCGAAGATTTCTGGTTCTTTGATAACTTACTTGACAGAAGA 239
||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||
Sbjct 176 GAAGCCATTGATGATCTTCTCGAAGATTTCTGGTTCTTTGATAATTTACTTGATAGAAGA 235
Query 240 TCAAGGATCTTGAGGTACTGTCATTCAGATCCTTACCC---TT-T---T-A-CTTCTTCT 290
||||||||||||||||||||||| |||||||||||||| || | | | ||||||||
Sbjct 236 TCAAGGATCTTGAGGTACTGTCACTCAGATCCTTACCCTTTTTCTCCCTCATCTTCTTCT 295
Query 291 TCTTCTTCA---ACTTGTCCCAAACCCGAATTACCGAAAATTGGAGATTCGGATTCGGAG 347
||||||||| |||||||| ||||||||| | |||||||||||||||||||||||||||
Sbjct 296 TCTTCTTCATCCACTTGTCCGAAACCCGAAATCCCGAAAATTGGAGATTCGGATTCGGAG 355
Query 348 ATTAAGCTTCTAGAAGCTTCTACTGGGGGAGACTTTGTTCCGCCGCCGTGTATAGAGAAA 407
| |||||||||||||||||| |||||||||| || |||||| ||||||||||||||||||
Sbjct 356 ACTAAGCTTCTAGAAGCTTCCACTGGGGGAGGCTCTGTTCCACCGCCGTGTATAGAGAAA 415
Query 408 AAAGAAGGCGGAGGCGAGCCTGAGAAGATAAATAAGGTGATGAGAAGGCAGTTCTCTGAG 467
|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 416 AAAGAAGGTGGAGGCGAGCCTGAGAAGATAAATAAGATGATGAGAAGGCAGTTCTCTGAG 475
Query 468 AAGACTAGGGTTCAAGAACGAAGAACTTACTTGCAAAAGAAGGAACCTGTAGTTCGAGAG 527
|||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 476 AAGATTAGGGTTCAAGAACGAAGAACTTACTTGCAAAAGAAGGAACCTGTGGTTCGAGAA 535
Query 528 AAGGGAATTAAAGAAGGTTCGAGGAAGAAGAACAGAACAAGAA-T--TAGTTGTAGTAAC 584
||||||||||||||||||||||||||||| || | || || | | |||||||||||||
Sbjct 536 AAGGGAATTAAAGAAGGTTCGAGGAAGAACAAAACAAGTAGTACTAGTAGTTGTAGTAAC 595
Query 585 AATAATAGTGTCCAGAGTTGCTCGATGGGAGGGAGTTTGCAGAGAACTCAGACTTTGCCT 644
|||||||| || || | | || ||| ||| || ||||||||||||||| |||||
Sbjct 596 AATAATAGC-TC--GA-TGG---GA-GGG-GGG--TT-GCAGAGAACTCAGACATTGCCG 643
Query 645 AGTTACTTAGGAAGAGAAGACGATGTAAATGAGTTTCAAGATCAAGAGATTGATGATTCA 704
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 644 AGTTACATAGGAAGAGAAGGCGATGTAAATGAGTTTCAAGATCAAGAGATTGATGATTCA 703
Query 705 AGAATGGGATTTTTGATCCGTGAAGCCATCGCTAACtcttcttcttcttcttcttctGGA 764
||||||||||| |||||||||||||||||||||| |||||||||||||||| |||
Sbjct 704 AGAATGGGATTCTTGATCCGTGAAGCCATCGCTAGCTCTTCTTCTTCTTCT------GGA 757
Query 765 TTTACTCCAACGAAACAGAACATTCCAAAGGTTTCATGCATTCCAAGGCATAGACCACCT 824
|||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||
Sbjct 758 CTTACTCCAACGAAACACAACACTCCAAAGGTTTCAAGCATTCCAAGGCATAGACCACCA 817
Query 825 AGAAACTCAAGATCAGAAGACGCTATTCAAGAATTGGTCGTCAAATCACAAAAAAGCCCA 884
|||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 818 AGAAACTCGAGATCAGAAGAAGCTATTCAAGAATTGGTCGTCAAATCACAAAGAAGCCCA 877
Query 885 AACCGCAAAACGCTGCGTAAAACGTTAAGCAGCATCGAGACGAAAGATATTCAAATGTTG 944
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 878 AATCGCAAAACGCTGCGTAAAACGTTAAGCAGCATCGAGACGAAAGATATTCAAATGTTA 937
Query 945 AAGGATTTTCACATTgaaacagagaagaagcaagaagaagacgaagaaaaacagaggaag 1004
|||||||| |||||||| |||||||||||||||||| | ||| ||||||| |
Sbjct 938 AAGGATTTGGACATTGAATTAGAGAAGAAGCAAGAAGA-G--GAA------CAGAGGA-G 987
Query 1005 -GTCCCATGCACCACCACTGGGAAAA-ACCGGTCTACAGCGGTGGTGGGACAGCCGATTC 1062
|||| | || ||||| | | |||| || ||||||||||||||||||||||||||||||
Sbjct 988 TGTCCAACGCGCCACCGC-G--AAAACAC-GGTCTACAGCGGTGGTGGGACAGCCGATTC 1043
Query 1063 CGGTTTGGGTTCCAAAGGATTCGAGAAAAGACATGAAAGCTCAGATAAAGTTTTGGGCTC 1122
|||| ||||||||||| |||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1044 CGGTATGGGTTCCAAATGATTCGAGAAAAGACATGAAAGCTCAAATAAAGTTCTGGGCTC 1103
Query 1123 GAACCGTCGCAAGTAATGTTCGACAAGAATGCTGATATCATTCACTTTCATTAGCAAACA 1182
| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 1104 GGACCGTCGCAAGTAATGTTCGACAAGAATGCTGATATCATTCGCTTTCATTAACAAACA 1163
Query 1183 AATTGCTTCTACGTATA-A-ACAAACA-C--TCATTTCATATTCTTTGGTTCCC-TTTAT 1236
|||||||||||| | || | | ||||| | |||||||||||||||| |||||| ||| |
Sbjct 1164 AATTGCTTCTACTTCTACATATAAACAACACTCATTTCATATTCTTTCGTTCCCCTTT-T 1222
Query 1237 GTTCAAAAAC-ATTCATCTATCATTTCACCTACAATAATAA 1276
||||||||| ||||||| |||||||| |||||||||||||
Sbjct 1223 GTTCAAAAAATATTCATCAATCATTTCTCCTACAATAATAA 1263
> Ahg474441 jgi|Araly1|474441|fgenesh2_kg.1__4395__AT1G53180.1
Length=1373
Score = 78.7 bits (42), Expect = 1e-13
Identities = 104/132 (79%), Gaps = 11/132 (8%)
Strand=Plus/Plus
Query 618 AGTTTGCAGAGAACTCAGACTTTGCCTAGTTAC-TTAGGAAGAGAAGACGAT-----G-T 670
|||||||| |||||||| || |||| | | || | | |||||||||| ||| | |
Sbjct 773 AGTTTGCAAAGAACTCAAACGATGCCAAATAACATCA-GAAGAGAAGAAGATAACGAGAT 831
Query 671 AAATGAGTTTCAAGATCAAGAGATTGATGATTCAAGAATGGGATTTTTGATCCGTGAAGC 730
| | |||||| |||||||||| | | || |||||||||||||||||||||||||||||
Sbjct 832 AGACGAGTTTGAAGATCAAGA-A-AG-CGACTCAAGAATGGGATTTTTGATCCGTGAAGC 888
Query 731 CATCGCTAACtc 742
| |||||| |||
Sbjct 889 CCTCGCTAGCTC 900
Score = 54.7 bits (29), Expect = 2e-06
Identities = 49/59 (83%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 787 TTCCAAAGGTTTCATGCATTCCAAGGCATAGACCACCTAGAAACTCAAGATCAGAAGAC 845
|||||||||||||| || || |||||| |||||||| |||| || |||| |||||||
Sbjct 909 TTCCAAAGGTTTCAAACAATCAAAGGCAGAGACCACCGAGAAGCTTGAGATTAGAAGAC 967
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51809044203
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5