BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G15190.1
Length=887
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929306 jgi|Araly1|929306|scaffold_301763.1 898 0.0
Ahg929307 jgi|Araly1|929307|scaffold_301764.1 252 4e-66
> Ahg929306 jgi|Araly1|929306|scaffold_301763.1
Length=635
Score = 898 bits (486), Expect = 0.0
Identities = 593/641 (93%), Gaps = 22/641 (3%)
Strand=Plus/Plus
Query 55 agagGAAGCTTGTAGAAATCGATGGCGACGATAGTGCAGTGTCTTTCTTCCTGTGCGACC 114
||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AGA-GAAGCTTGTAGAAATAGATGGCGACGATAGTGCAGTGTCTTTCTTCCTGTGCGACC 59
Query 115 CTCGAATCCCAATTCAAAGTCCTTTCGCTTAAGGGAATCTCTTGTTCGTCACCATCTTCT 174
|||||||||||||||||||||||||| |||||||||| || ||| ||||||||
Sbjct 60 CTCGAATCCCAATTCAAAGTCCTTTCTCTTAAGGGAA--------TC-TCATCATCTTCT 110
Query 175 TCCTTCTCCAATCGTC---GTGGTGCTTCGGCTACCTTATCCTCTTCCCTTAGCTTCTCT 231
|||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||
Sbjct 111 TCCTTCTCCAATCGTCGTGGTGGTGCTTCGGCTACTTTATGCTCTTCCCTTAGCTTCTCT 170
Query 232 CAGAGCGTTTCTCAATGCGTCGCCTTCTCAACCGGGAATTTGTGGGTACAGAAGCCAATG 291
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 171 CAGAGCGTTTCTCAATGCGTCGCCTTCTCCTCCGGGAATTTGTGGGTACAGAAGCCAATG 230
Query 292 AGGCAATTGATTGTGTGTGAGGCTGCTGCTCCTACCAAGAAAGCTGATTCAGCTGCAAAG 351
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 231 AGGCAATTGATTGTGTGTGAGGCTGCTGCTCCGACGAAGAAAGCTGATTCAGCTGCAAAG 290
Query 352 AGAGCTCGCCAAGCTGAGAAGAGGCGTGTTTACAACAAATCTAAGAAATCTGAAGCCCGT 411
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 291 AGAGCTCGCCAAGCCGAGAAGAGGCGTGTTTACAACAAATCTAAGAAATCTGAAGCCCGT 350
Query 412 ACCCGGATGAAGAAGGTCTTGGAAGCACTTGAGGGGCTCAAGAAGAAAACTGATGCGCAA 471
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 351 ACACGGATGAAGAAGGTCTTGGAAGCACTTGAGGGGCTTAAGAAGAAAACTGATGCGCAA 410
Query 472 GCTGATGAGATTGTGACGGTGGAGAAACTGATAGGAGAGGCTTATTCTGCAATTGACAAA 531
|||||||||||||||| ||||||||||| |||||||||||||||||||| || ||||||
Sbjct 411 CCTGATGAGATTGTGACTGTGGAGAAACTAATAGGAGAGGCTTATTCTGCTATAGACAAA 470
Query 532 GCAGTGAAGGTTAAAGCACTACACAAGAACACTGGTGCCCGTAGGAAGTCTCGATTGGCT 591
||||| ||||||||||| |||||||||||||||||||| ||||| |||||||| ||||||
Sbjct 471 GCAGTCAAGGTTAAAGCGCTACACAAGAACACTGGTGCACGTAGAAAGTCTCGGTTGGCT 530
Query 592 AGGAGGAAAAAAGCCGTTGAAATTCACCATGGTTGGTACGTCCCAGACGCAGCTGCTGCA 651
|||||||||||||||||||| |||||||| ||||||||||||||||| |||| | |
Sbjct 531 AGGAGGAAAAAAGCCGTTGAGATTCACCACGGTTGGTACGTCCCAGATGCAG-T-----A 584
Query 652 GCACCATCAGAAGCTGTGCCCATGGCTGCATAAGAACATGG 692
||| |||||||||||| ||||||||||||||||||||||
Sbjct 585 GCA---TCAGAAGCTGTGACCATGGCTGCATAAGAACATGG 622
> Ahg929307 jgi|Araly1|929307|scaffold_301764.1
Length=1595
Score = 252 bits (136), Expect = 4e-66
Identities = 144/148 (97%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 740 CTGTTTCTTTATAATGTACATTTAGTCGCTTTCAGACTCTTCGCTTGTTAAGTTCGATCT 799
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1595 CTGTTTCTTTATAATGTACATTTAGTCGCTTTCAGACTCTTCGCTTGTTAAGTTTGATCT 1536
Query 800 AAGCATTTTGTCTTCTACTCTTGGCTTGGTCTTGTTCTGGTTCAGTAACATCTCAGTTCT 859
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1535 AAGCATTTTGTCTTCTACTCTTGGCTTGGTCTTGTTCTTGTTCAGTAACATCTCAGTTCT 1476
Query 860 TGGCTCTGGTACCATTCCTTTTGACATC 887
||||||||| ||||||||||| ||||||
Sbjct 1475 TGGCTCTGGCACCATTCCTTTAGACATC 1448
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32861954454
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5