BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G15260.1 Length=1159 Score E Sequences producing significant alignments: (Bits) Value Ahg478958 jgi|Araly1|478958|fgenesh2_kg.3__1659__AT3G15260.2 1626 0.0 > Ahg478958 jgi|Araly1|478958|fgenesh2_kg.3__1659__AT3G15260.2 Length=1254 Score = 1626 bits (880), Expect = 0.0 Identities = 978/1025 (95%), Gaps = 8/1025 (1%) Strand=Plus/Plus Query 11 AGAAAGCGGCGGTGGAAGCTGAGACATGCAACAATGGCGTTCGTGTCAttctcttcttct 70 |||||||||||||||||||| |||||||| | |||| ||||||||||||||||||||| Sbjct 1 AGAAAGCGGCGGTGGAAGCT--GACATGCATCGGTGGCTTTCGTGTCATTCTCTTCTTCT 58 Query 71 ccttctctctctcttACACTCGCGATTCAACATTAATTTCGTTCTTCTTCATACACATAT 130 ||||||||||||||||| |||||||||||| |||||||||||||||||||| |||||||| Sbjct 59 CCTTCTCTCTCTCTTACGCTCGCGATTCAAGATTAATTTCGTTCTTCTTCACACACATAT 118 Query 131 A-TAGAT-A--GTGTCTTCATTTTCCAACCATGACCGGTAGAGAAATCCTCCACAAGATG 186 | ||||| | ||||||| || ||| | ||||||||||||||||||| |||||||||||| Sbjct 119 ATTAGATAATCGTGTCTTTATCTTCGAGCCATGACCGGTAGAGAAATTCTCCACAAGATG 178 Query 187 AAGGAATCCGTCAAGGAGAAAGTTGGGCTTGGTGCATCTGCTTCATCTGCAGATTCAGGG 246 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || Sbjct 179 AAGGAATCCGTCAAGGAGAAAGTTGGGCTTGGTGCATCTGCTTCTTCTGCAGATTCATGG 238 Query 247 AAAGGTAAGAGCAAGATGTTGAAGCAGATCACACATGGTTTTCATTTGGTGAAAGGGAAA 306 ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| Sbjct 239 AAAGGTAAGAGCAAGATGTCGAAGCAGATTACACATGGTTTTCATTTGGTGAAAGGGAAA 298 Query 307 GCTTTTCACGAGATGGAAGATTATGTGGTTGCCAAATTCAAGGAAGTTGATGATAATGAG 366 ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| Sbjct 299 GCTTTTCACGAGATGGAGGATTATGTGGTTGCCAAATTCAAGGAAGTTGATGACAATGAG 358 Query 367 CTTGGTC-TGTTTGCTATCTTCGATGGCCATCTTAGCCACGAGATTCCGGACTACTTGTG 425 ||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 359 CTTGG-CTTGTTTGCTATCTTCGATGGCCATCTTAGCCACGAGATTCCTGACTACTTGTG 417 Query 426 CTCCCATTTGTTTGAGAACATCTTGAAAGAGCCGAATTTCTGGCAAGAACCTGAGAAAGC 485 ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| Sbjct 418 CTCCCATTTGTTTGAGAACATCTTGAATGAGCCGAATTTCTGGCAAGAGCCTGAGAAAGC 477 Query 486 GATAAAGAAAGCTTACTATATAACGGATACAACGATTCTAGACAAGGCAGATGATTTGGG 545 ||||||||||||||| ||||||||||||||||||||||| |||||||| | ||||||||| Sbjct 478 GATAAAGAAAGCTTATTATATAACGGATACAACGATTCTGGACAAGGCTGCTGATTTGGG 537 Query 546 AAAAGGAGGTTCTACTGCTGTGACTGCGATATTGATCAATTGCCAGAAGCTGGTGGTTGC 605 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 538 GAAAGGAGGTTCTACTGCTGTGACTGCGATATTGATCAATTGCCAGAAGCTGGTGGTTGC 597 Query 606 TAATGTTGGTGACTCTCGAGCTGTTATTTGCCAAAATGGTGTTGCGAAGCCACTCTCAGT 665 |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 598 TAATGTCGGAGACTCTCGAGCTGTTATTTGCCAAAATGGTGTTGCGAAGCCACTCTCAGT 657 Query 666 TGATCATGAGCCGAACATGGAGAAGGATGAAATCGAGAACAGAGGAGGATTCGTTTCTAA 725 |||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||| Sbjct 658 TGATCATGAGCCGAGCATGGAGAAGGATGAAATTGAGAACAGAGGCGGATTCGTTTCTAA 717 Query 726 CTTTCCTGGGGATGTTCCTCGAGTTGATGGTCAACTGGCTGTGGCAAGGGCATTTGGTGA 785 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 718 CTTTCCTGGGGATGTTCCTCGAGTTGATGGTCAACTGGCTGTGGCAAGGGCATTTGGTGA 777 Query 786 TAAGAGTTTAAAGATGCATTTGAGTTCAGAACCATATGTTACGGTGGAGATAATTGATGA 845 ||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||||| Sbjct 778 TAAGAGTTTAAAGATGCATCTGAGTTCAGAACCATATGTCACGGTGGAGACAATTGATGA 837 Query 846 TGATGCAGAATTTCTTATCCTAGCAAGTGATGGACTATGGAAGGTCATGTCAAACCAAGA 905 ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct 838 TGATGCAGAATTTCTTATCCTAGCAAGTGATGGGCTGTGGAAGGTCATGTCAAACCAAGA 897 Query 906 AGCCGTTGACTCAATCAAGGGAATAAAAGATGCGAAGGCTGCAGCAAAGCACCTTGCAGA 965 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 898 AGCCGTTGACTCGATCAAGGGAATAAAAGATGCGAAGGCTGCAGCAAAGCACCTTGCAGA 957 Query 966 GGAGGCTGTTGCAAGGAAAAGCTCAGACGATATCTCAGTCGTCGTCGTGAAATTTCAGTG 1025 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | Sbjct 958 GGAGGCTGTTGCAAGGAAAAGCTCGGACGATATCTCAGTCGTCGTCGTGAAATTTCAGCG 1017 Query 1026 ACATT 1030 ||||| Sbjct 1018 ACATT 1022 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43231387878 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5