BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G15353.1
Length=443
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929332 jgi|Araly1|929332|scaffold_301789.1 405 1e-112
> Ahg929332 jgi|Araly1|929332|scaffold_301789.1
Length=253
Score = 405 bits (219), Expect = 1e-112
Identities = 240/250 (96%), Gaps = 2/250 (1%)
Strand=Plus/Plus
Query 59 TTTTCAAAAACTCAATCATGTCAAGCAACTGCGGAAGCTGCGACTGTGCTGACAAGACCC 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5 TTTTCAAAAACTCAATCATGTCAAGCAACTGCGGAAGCTGCGACTGTGCTGACAAGACCC 64
Query 119 AGTGCGTAAAGAAGGGAACCAGCTACACCTTCGACATCGTCGAGACTCAGGAGAGCTACA 178
||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 65 AGTGCGTGAAGAAGGGAACCAGCTACACCTTCGACATCGTCAAGACTCAGGAGAGCTACA 124
Query 179 AGGAGGCCATGATCATGGACGTTGGTGCCGAGGAGAACAACGCAAATTGCAAGTGCAAGT 238
|||||||||||||||||||||||||||| ||||||||| |||| |||||||| |||||||
Sbjct 125 AGGAGGCCATGATCATGGACGTTGGTGCAGAGGAGAACGACGCGAATTGCAACTGCAAGT 184
Query 239 GCGGCTCCTCTTGCAGCTGCGTCAACTGCACTTGCTGCCCCAACTAATGAA-GCTTCTTT 297
|||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 185 GCGGCTCCACTTGCAGCTGCGTCAACTGCACTTGCTGCCCCAACTAAA-AATGCTTCTTT 243
Query 298 AATCAAAATG 307
||||||||||
Sbjct 244 AATCAAAATG 253
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15987191791
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5