BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G15360.1

Length=896
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg929337 jgi|Araly1|929337|scaffold_301794.1                        898    0.0  


> Ahg929337 jgi|Araly1|929337|scaffold_301794.1
Length=622

 Score =  898 bits (486),  Expect = 0.0
 Identities = 584/630 (93%), Gaps = 11/630 (2%)
 Strand=Plus/Plus

Query  50   aaaaaaaTATCTCTGCTCTGCTCCAATGGCGTCGTTACTCGATTCCGTCACCGTGACCCG  109
            |||| ||| |||||||||  || ||||||||||||| |||||||||||||||||||||||
Sbjct  1    AAAAGAATTTCTCTGCTC--CTTCAATGGCGTCGTTGCTCGATTCCGTCACCGTGACCCG  58

Query  110  CGTGTTTTCTCTGCCGATTGCGGCTTCGGTCTCGTCTTCTTCAGCTGCTCCGTCGGTTTC  169
            |||||||||||| ||||||||||||||| | || ||| ||||||||| ||||||||||||
Sbjct  59   CGTGTTTTCTCTCCCGATTGCGGCTTCGATTTCATCTACTTCAGCTGGTCCGTCGGTTTC  118

Query  170  ACGACGCCGGATTTCTCCC-GCCAGGTTTCTGGAATTCAGAGGTTTGAAGTCTTCGCGGA  228
            | ||||||||||||| ||| | ||||||||||||||||||||||||||| | ||||||||
Sbjct  119  AGGACGCCGGATTTC-CCCAGTCAGGTTTCTGGAATTCAGAGGTTTGAAATGTTCGCGGA  177

Query  229  GTTTGGTGACTCAGTCGGCCAGTCTGGGTGCGAATCGTAGAACCAGAATC-GCTCGCGGT  287
            |||||||||||||||| || ||| | ||||||||||||||| |||| | | |||||||||
Sbjct  178  GTTTGGTGACTCAGTCAGCGAGTGTTGGTGCGAATCGTAGATCCAG-AGCTGCTCGCGGT  236

Query  288  GGACGAATCGCCTGTGAGGCTCAGGACACCACTGCCGCCGCCGTCGAAGTACCAAATCTG  347
            ||| |||||||||||||||||||||||||||||   || ||||||||||||||||| |||
Sbjct  237  GGAAGAATCGCCTGTGAGGCTCAGGACACCACT---GCTGCCGTCGAAGTACCAAACCTG  293

Query  348  TCTGATTCAGAATGGCAAACAAAGGTTCTGGAATCAGATGTCCCAGT-TCTGGTCGAGTT  406
            ||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||
Sbjct  294  TCTGATTCAGAATGGCAAACACAGGTTCTGGAATCAGATGTCCCAGTAT-TGGTCGAGTT  352

Query  407  CTGGGCACCATGGTGTGGACCTTGCCGTATGATTCACCCCATAGTTGACCAGCTAGCCAA  466
            ||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||
Sbjct  353  CTGGGCACCATGGTGTGGACCATGCCGTATGATTCACCCCATAGTTGACCAACTGGCCAA  412

Query  467  AGATTTCGCAGGGAAGTTCAAATTCTACAAAATCAACACTGACGAGAGCCCAAATACAGC  526
            ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct  413  AGATTTCGCAGGGAAGTTCAAATTCTACAAAATCAACACCGACGAGAGCCCAAACACAGC  472

Query  527  AAACCGTTACGGGATACGAAGCGTTCCAACAGTAATCATCTTCAAAGGCGGTGAGAAGAA  586
            |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct  473  AAACCGTTACGGGATACGCAGCGTTCCAACAGTAATCATCTTCAAAGACGGTGAGAAGAA  532

Query  587  AGATAGCATCATTGGAGCTGTGCCTAGAGAGACGTTGGAGAAAACTATAGAAAGATTCTT  646
            |||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct  533  AGATAGTATCATTGGAGCTGTCCCTAGAGAGACATTGGAGAAAACTATAGAAAGATTCTT  592

Query  647  GGTCGAGTAACAAAATTTGACTCTTTTGTC  676
            ||||||||||||||||||||||| ||||||
Sbjct  593  GGTCGAGTAACAAAATTTGACTCGTTTGTC  622



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 33205060707


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5