BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G15360.1 Length=896 Score E Sequences producing significant alignments: (Bits) Value Ahg929337 jgi|Araly1|929337|scaffold_301794.1 898 0.0 > Ahg929337 jgi|Araly1|929337|scaffold_301794.1 Length=622 Score = 898 bits (486), Expect = 0.0 Identities = 584/630 (93%), Gaps = 11/630 (2%) Strand=Plus/Plus Query 50 aaaaaaaTATCTCTGCTCTGCTCCAATGGCGTCGTTACTCGATTCCGTCACCGTGACCCG 109 |||| ||| ||||||||| || ||||||||||||| ||||||||||||||||||||||| Sbjct 1 AAAAGAATTTCTCTGCTC--CTTCAATGGCGTCGTTGCTCGATTCCGTCACCGTGACCCG 58 Query 110 CGTGTTTTCTCTGCCGATTGCGGCTTCGGTCTCGTCTTCTTCAGCTGCTCCGTCGGTTTC 169 |||||||||||| ||||||||||||||| | || ||| ||||||||| |||||||||||| Sbjct 59 CGTGTTTTCTCTCCCGATTGCGGCTTCGATTTCATCTACTTCAGCTGGTCCGTCGGTTTC 118 Query 170 ACGACGCCGGATTTCTCCC-GCCAGGTTTCTGGAATTCAGAGGTTTGAAGTCTTCGCGGA 228 | ||||||||||||| ||| | ||||||||||||||||||||||||||| | |||||||| Sbjct 119 AGGACGCCGGATTTC-CCCAGTCAGGTTTCTGGAATTCAGAGGTTTGAAATGTTCGCGGA 177 Query 229 GTTTGGTGACTCAGTCGGCCAGTCTGGGTGCGAATCGTAGAACCAGAATC-GCTCGCGGT 287 |||||||||||||||| || ||| | ||||||||||||||| |||| | | ||||||||| Sbjct 178 GTTTGGTGACTCAGTCAGCGAGTGTTGGTGCGAATCGTAGATCCAG-AGCTGCTCGCGGT 236 Query 288 GGACGAATCGCCTGTGAGGCTCAGGACACCACTGCCGCCGCCGTCGAAGTACCAAATCTG 347 ||| ||||||||||||||||||||||||||||| || ||||||||||||||||| ||| Sbjct 237 GGAAGAATCGCCTGTGAGGCTCAGGACACCACT---GCTGCCGTCGAAGTACCAAACCTG 293 Query 348 TCTGATTCAGAATGGCAAACAAAGGTTCTGGAATCAGATGTCCCAGT-TCTGGTCGAGTT 406 ||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||| Sbjct 294 TCTGATTCAGAATGGCAAACACAGGTTCTGGAATCAGATGTCCCAGTAT-TGGTCGAGTT 352 Query 407 CTGGGCACCATGGTGTGGACCTTGCCGTATGATTCACCCCATAGTTGACCAGCTAGCCAA 466 ||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||| Sbjct 353 CTGGGCACCATGGTGTGGACCATGCCGTATGATTCACCCCATAGTTGACCAACTGGCCAA 412 Query 467 AGATTTCGCAGGGAAGTTCAAATTCTACAAAATCAACACTGACGAGAGCCCAAATACAGC 526 ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| Sbjct 413 AGATTTCGCAGGGAAGTTCAAATTCTACAAAATCAACACCGACGAGAGCCCAAACACAGC 472 Query 527 AAACCGTTACGGGATACGAAGCGTTCCAACAGTAATCATCTTCAAAGGCGGTGAGAAGAA 586 |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| Sbjct 473 AAACCGTTACGGGATACGCAGCGTTCCAACAGTAATCATCTTCAAAGACGGTGAGAAGAA 532 Query 587 AGATAGCATCATTGGAGCTGTGCCTAGAGAGACGTTGGAGAAAACTATAGAAAGATTCTT 646 |||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct 533 AGATAGTATCATTGGAGCTGTCCCTAGAGAGACATTGGAGAAAACTATAGAAAGATTCTT 592 Query 647 GGTCGAGTAACAAAATTTGACTCTTTTGTC 676 ||||||||||||||||||||||| |||||| Sbjct 593 GGTCGAGTAACAAAATTTGACTCGTTTGTC 622 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33205060707 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5