BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G15430.1 Length=2038 Score E Sequences producing significant alignments: (Bits) Value Ahg478986 jgi|Araly1|478986|fgenesh2_kg.3__1687__AT3G15430.2 3127 0.0 > Ahg478986 jgi|Araly1|478986|fgenesh2_kg.3__1687__AT3G15430.2 Length=2147 Score = 3127 bits (1693), Expect = 0.0 Identities = 1866/1948 (96%), Gaps = 17/1948 (1%) Strand=Plus/Plus Query 93 CAGTTCGAAGAATCTGGCGTGTTCAGGTGGATTGATTCTTGCGATCTGACCCTTCTCATG 152 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 214 CAGTTCGAAGAATCTGGCGTGTTCAGGTGGATTGATTCTTGCGATCTGACCCTTCTCATG 273 Query 153 ATTAGTTTCCGATCTTCGAATAGACCAACTGCGAGATTCTCATCTATAACTCCGTTTTCC 212 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 274 ATTAGTTTTCGATCTTCGAATAGACCAACTGCGAGATTCTCATCTATAACTCCGTTTTCC 333 Query 213 TATTCGATTTCTTATCTCTTTCTACCATCCAACGTGTTCTTCATACATTACTTCAATTGC 272 ||||| ||||||||||||||||||||||||||||| |||||||||| |||||||||||| Sbjct 334 TATTCAATTTCTTATCTCTTTCTACCATCCAACGTCTTCTTCATACGCTACTTCAATTGC 393 Query 273 TCTCGATTTCGCCTCAAAATCTGATCCTCTAGTAGCTTGAAGCAACCCAAAGTCTCGTCC 332 ||| |||||||||||||||||||| ||||| |||||||||||| ||||||||||||||| Sbjct 394 TCTAGATTTCGCCTCAAAATCTGACCCTCTTGTAGCTTGAAGCCACCCAAAGTCTCGTCT 453 Query 333 TTTAC--GTTCAATTAGGTCATTTTGAAACCCTGTTCTTAGAATTAGGAAGGGAA-GAAA 389 ||||| |||| |||||||||||||||||| ||||||||||||||||||| |||| ||| Sbjct 454 TTTACGTGTTCGATTAGGTCATTTTGAAACTCTGTTCTTAGAATTAGGAA-GGAATAAAA 512 Query 390 TGGCTGATCGAAACTGTTTGATTTCGTTCGAGGATCTTCCTTCTCATTTGATCTTGGAGG 449 ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 513 TGGCTGACCGAAACTGGTTGATTTCGTTCGAGGATCTTCCTTCTCATTTGATCTTGGAGG 572 Query 450 TGTTGACCTCTGGGAGGCTTAGTGCGGTTGATCTACTTAGCTTGGAATTGACTTCTAAGG 509 ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| Sbjct 573 TGTTGACCTCTGGGAAGCTTAGTGCGGTTGATCTACTTAGCTTGGAATTGACCTCTAAGG 632 Query 510 TTTTCGGAGGGAGCCATGGATTCTATCCTTTGAAATTCAGATCATTAGCTGATTATGCGG 569 ||||||||||||||||||||||||| |||||||||||||||||| | |||||||| |||| Sbjct 633 TTTTCGGAGGGAGCCATGGATTCTACCCTTTGAAATTCAGATCACTCGCTGATTACGCGG 692 Query 570 CGTCTCAGCTTTGCTCTATGCACCCTGTCTACGTGGGAATGGGTTTGACTACACAGAAAG 629 | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 693 CCTCTCAGCTTTGCTCTATGCATCCTGTCTACGTGGGAATGGGTTTGACTACACAGAAAG 752 Query 630 AGCTCTTTGCCAATTGTGAGGGAAACTGGAAGCGGCTTTTTAGTTTCTTGCAGTCAGTTG 689 |||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||| Sbjct 753 AGCTCTTTGCCAATTGTGAGGGAAACTGGAAGCGGCTTTTGAGTTTCCTACAGTCAGTTG 812 Query 690 AGCAATCCTCAGATATGGTTGAAACCTCTCAAGGCAAAATGCAAATTGCAACAGGAAAGT 749 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 813 AGCAATCCTCAGATATGGTTGAAACCTCTCAAGGCAAAATGCAAATTGCAACAGGAAAGT 872 Query 750 ATCACACTTTGCTAATCAACAACTCAAAGGTTTATTCTTGTGGTGTAAGTTTGTCCGGTG 809 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 873 ATCACACTTTGCTAATCAATAACTCAAAGGTTTATTCTTGTGGTGTAAGTTTGTCCGGTG 932 Query 810 TTCTTGCTCATGGCTCTGAAACTACTCAGTGTGTAGCATTTACACCTATAGAGTTTCCGT 869 |||||||||||||| ||||||||||||| || ||||||||||| |||||||||||||||| Sbjct 933 TTCTTGCTCATGGCCCTGAAACTACTCAATGCGTAGCATTTACGCCTATAGAGTTTCCGT 992 Query 870 TCCCTGCTCAAGTGGCTCAAGTCTCAGCCACACAGAACCATTCTGCTTTCGTATTGCAAT 929 ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 993 TCCCTGCACAAGTTGCTCAAGTCTCAGCCACACAGAACCATTCTGCTTTCGTATTGCAAT 1052 Query 930 CTGGACAGGTTCTCACTTGTGGGGATAATTCATCGCATTGCTGTGGTCATTTAGATACTA 989 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1053 CTGGAGAGGTTCTCACTTGTGGGGATAATTCATCGCATTGCTGTGGTCATTTAGATACTA 1112 Query 990 GCCGTCCAATATTTAGGCCTAAGCTTGTTGAGGCTTTGAAGGGGACTCCTTGTAAGCAGG 1049 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1113 GCCGTCCAATATTTAGGCCTAAGCTTGTTGAGGCTTTGAAGAGGACTCCTTGTAAGCAGG 1172 Query 1050 TGGCTGCTGGGCTTCACTTTACTGTGTTTCTATCAAGGGAAGGGCATGCATATACTTGTG 1109 ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| Sbjct 1173 TGGCTGCTGGGCTTCACTTCACTGTGTTTCTATCAAGGGAAGGGCATGCGTATACTTGTG 1232 Query 1110 GATCAAATACACATGGGCAGCTTGGTCATGGAGATACCTTGGACAGACCAGTACCCAAAG 1169 ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| Sbjct 1233 GATCAAATACACATGGGCAGCTTGGTCATGGCGATACCATGGACAGACCAGTACCCAAAG 1292 Query 1170 TTGTTGAGTTTCTTAAAACCATTGGCCCTGTGGTGCAAATTGCAGCTGGACCCAGCTATG 1229 |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| Sbjct 1293 TTGTTGAGTTTCTTAAAAACATTGGCCCTGTGGTGCAAATCGCAGCTGGACCCAGCTATG 1352 Query 1230 TTTTAGCTGTAACACAGGATGGCTCGGTTTACTCGTTTGGCTCTGGTTCTAACTTCTGTC 1289 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1353 TTTTAGCTGTAACACAGGATGGCTCGGTTTACTCGTTTGGCTCTGGTTCTAACTTCTGTC 1412 Query 1290 TTGGTCATGGAGAGCAACAGGACGAGCTCCAGCCGCGTGTTATTCAGGCTTTTAAAAGAA 1349 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1413 TTGGTCATGGAGAGCAACAGGACGAGCTTCAGCCGCGTGTTATTCAGGCTTTTAAAAGAA 1472 Query 1350 AAGGTATTCACATACTCCGTGTCTCTGCAGGCGATGAGCACGCCGTGGCACTTGATTCCA 1409 |||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||| Sbjct 1473 AAGGTATTCATATACTCCGTGTCTCTGCAGGTGATGAACACGCCGTGGCACTTGATTCCA 1532 Query 1410 ATGGCCGTGTCTACACATGGGGTAAAGGTTACTGTGGTGCTCTAGGCCATGGAGACGAAA 1469 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1533 ATGGCCGTGTCTACACATGGGGTAAAGGTTACTGCGGTGCTCTAGGCCATGGAGACGAAA 1592 Query 1470 ACGACAAGATCACTCCTCAAGTTTTGGTCAATCTCAACAATTGCCTTGCTGTCCAGGTGT 1529 | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1593 ATGACAAGATCACTCCTCAAGTTTTGGTCAATCTCAAGAATTGCCTTGCTGTCCAGGTGT 1652 Query 1530 GTGCAAGAAAAAGGAAGACTTTTGTTTTGGTGGAAGGTGGATTACTATATGGATTTGGGT 1589 ||||||| |||||||||||||||||||||||||||||||| ||| | ||||||||||||| Sbjct 1653 GTGCAAGGAAAAGGAAGACTTTTGTTTTGGTGGAAGGTGGGTTATTGTATGGATTTGGGT 1712 Query 1590 GGATGGGGTTTGGAAGCCTTGGGTTCCCGGACAGAGGAGTTTCAGACAAAGTTCTTAGGC 1649 |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| Sbjct 1713 GGATGGGGTTTGGAAGCCTTGGGTTCCCAGACAGAGGAGTTTCAGACAAAGTTCTGAGGC 1772 Query 1650 CAAGAGTATTGGAGTGTCTGAAACCACACCGTGTCTCTCAAGTTAGCACCGGTTTGTATC 1709 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1773 CAAGAGTATTGGAGTGTCTGAAACCACACCGTGTCTCTCAAGTTAGCACCGGCTTGTATC 1832 Query 1710 ACACCATTGTGGTCACTCAACGTGGTCGCATTTTTGGGTTTGGAGATAACGAAAGAGCTC 1769 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1833 ACACCATTGTGGTCACTCAACGTGGTCGCATTTTTGGGTTTGGAGATAATGAAAGAGCTC 1892 Query 1770 AGCTTGGTCACGACTCACTCCGTGGCTGCTTAGAACCTACCGAAATCTTTCTCCATTGTG 1829 |||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||| Sbjct 1893 AGCTTGGTCATGACTCACTCCGCGGCTGCTTAGAACCAACCGAAATCTTTCTCCATTGTG 1952 Query 1830 GCCGTTCTCGTAGCCGGCTTTGTTGATCCAAGGTATAGATAAACAACCATGTTTGTATGA 1889 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1953 GCCGTTCTCGTAGCCGGCTTTGTTGATCCAAGGTATAGATAAACAACCCTGTTTGTATGA 2012 Query 1890 ACCGGATTGAGATTGGATTTACCGGTTAGTGTATCTTGTATTGATTTGTATCTGTTTGAT 1949 ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 2013 ACCGGATTGGGATTGGATTTACCGGTTAGTGTATGTTGTATTGATTTGTATCTGTTTGAT 2072 Query 1950 TTCTTCAAGTTGTGAGAGTAATAGAAGATATTTCCAGACACCTTAGTGCAGAGAATTATG 2009 || ||||||||||| |||||||||||||||||||| | || | ||| | | ||| Sbjct 2073 TT-TTCAAGTTGTGTGAGTAATAGAAGATATTTCC-G-CA-----G---AGA-A-TCATG 2119 Query 2010 ACATGAGTTAATTAATCTAAGAAGTTTT 2037 |||||||||| ||||||||||||||||| Sbjct 2120 ACATGAGTTAGTTAATCTAAGAAGTTTT 2147 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 76637572940 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5