BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G15450.1 Length=951 Score E Sequences producing significant alignments: (Bits) Value Ahg478991 jgi|Araly1|478991|fgenesh2_kg.3__1692__AT3G15450.1 1299 0.0 Ahg914474 jgi|Araly1|914474|Al_scaffold_0001_4728 719 0.0 > Ahg478991 jgi|Araly1|478991|fgenesh2_kg.3__1692__AT3G15450.1 Length=875 Score = 1299 bits (703), Expect = 0.0 Identities = 786/825 (95%), Gaps = 9/825 (1%) Strand=Plus/Plus Query 60 AAC-GAAAATGTTGGCAATATTTCAGAAAGCTTTTGCTCACCCACCGGAAGAACTCAACA 118 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 17 AACAGAAAATGTTGGCAATATTTCAGAAAGCTTTTGCTCACCCACCGGAAGAACTCAACA 76 Query 119 GTCCGGCTTCTCAT-TTCTCCGGCAAAACTCCTAAACTTCCCGGCGAAACTCTCTCCGAC 177 ||||||| |||||| || |||||| |||| |||||||||||||| ||||||||||||||| Sbjct 77 GTCCGGCGTCTCATGTT-TCCGGCGAAACCCCTAAACTTCCCGGAGAAACTCTCTCCGAC 135 Query 178 TTCCTCTCTCATCACCAAAACAATGCTTTCTCTATGAACTTCGGCGACTCCGCCGTCTTA 237 |||||||||| ||||||||||| ||| |||| |||||||||||||| |||||||||||| Sbjct 136 TTCCTCTCTCGTCACCAAAACACCGCTCTCTCCATGAACTTCGGCGATTCCGCCGTCTTA 195 Query 238 GCTTACGCTCGCCAAGAAACCTCTCTTCGTCAAAGGTTGTTCTGTGGACTAGATGGGATC 297 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 196 GCTTACGCTCGCCAAGAAACCTCTCTTCGTCAGAGGTTGTTCTGTGGACTAGATGGGATC 255 Query 298 TACTGTATGTTTCTAGGGAGATTGAATAATCTCTGTACATTGAATCGACAATACGGTTTA 357 ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| Sbjct 256 TACTGTATGTTTCTAGGGAGATTGAGCAACCTCTGTACATTGAATCGACAATACGGTTTA 315 Query 358 TCTGGGAAGAACTCAAACGAGGCAATGTTTGTGATCGAAGCTTATCGAACACTTCGTGAT 417 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 316 TCTGGGAAGAACTCGAACGAGGCAATGTTTGTGATCGAAGCTTATCGAACACTTCGTGAT 375 Query 418 CGTGGTCCTTACCCAGCAGATCAAGTTC-TTAGAGGTCTTGAGGGAAGCTTCGCTTTCGT 476 ||||||||||||||||| || |||| || ||||||||||||||||||||||||||||||| Sbjct 376 CGTGGTCCTTACCCAGCTGACCAAG-TCATTAGAGGTCTTGAGGGAAGCTTCGCTTTCGT 434 Query 477 TGTCTACGATACTCAAA-CTTCCTCTGTTTTCTCAGCTCTGAGTTCTGATGGAGGAGAGA 535 |||||||||| |||||| | |||||||||||||||||| ||||||||||||||||||||| Sbjct 435 TGTCTACGATTCTCAAAGC-TCCTCTGTTTTCTCAGCTTTGAGTTCTGATGGAGGAGAGA 493 Query 536 GTCTTTACTGGGGAATTTCTGGAGACGGATCTGTTGTAATGTCTGATGATATTCAGATCA 595 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 494 GTCTTTACTGGGGAATTTCTGGAGACGGATCTGTTGTGATGTCTGATGATATTCAGATCA 553 Query 596 TAAAGCAAGGCTGTGCTAAATCGTTTGCTCCTTTCCCTAATGGATGTATGTTTCATAGTG 655 |||||||||| ||||||||||| |||||||||||||||| ||| |||||||||||||||| Sbjct 554 TAAAGCAAGGATGTGCTAAATCATTTGCTCCTTTCCCTACTGGGTGTATGTTTCATAGTG 613 Query 656 AGACAGGGCTTAAGAGCTTTGACCATCCGACTAATATGATGAAGGCAATGCCGAGGATTG 715 |||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||| Sbjct 614 AGACAGGGCTTAAGAGCTTTGAACATCCGACTAATAAGATGAAGGCAATGGCGAGGATTG 673 Query 716 ATAGTGAAGGTGTTCTTTGTGGAGCTAGTTTCAAAGTTGATGCTTGTTCTAAGATCAATA 775 ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || Sbjct 674 ATAGTGAAGGTGTTCTTTGTGGAGCTAATTTCAAAGTTGATGCTTGTTCTAAGATCATTA 733 Query 776 GTATCCCTAGAAGAGGAAGTGAAGCTAACTGGGCGCTGGCTAATTCTCGTTGATTTTGCT 835 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 734 GTATCCCTAGAAGAGGAAGTGAAGCTAACTGGGCGCTGGCTAATTCTCGTTGATTTTGCT 793 Query 836 TCTAGTTTCGTTAACTCTTGCTTCTTTGTTGCGTTTTCTTTTTAT 880 ||| ||||||| |||||||||||||| |||||||||||||||||| Sbjct 794 TCTTGTTTCGT-AACTCTTGCTTCTT-GTTGCGTTTTCTTTTTAT 836 > Ahg914474 jgi|Araly1|914474|Al_scaffold_0001_4728 Length=762 Score = 719 bits (389), Expect = 0.0 Identities = 649/771 (84%), Gaps = 32/771 (4%) Strand=Plus/Plus Query 67 ATGTTGGCAATATTTCAGAAAG-CTTTTGCTCACCCACCGGAAGAACTCAACAGTCCGGC 125 |||||||| || ||||| |||| | |||| ||| |||||||||||||| ||||||||||| Sbjct 1 ATGTTGGCTATTTTTCA-AAAGACGTTTGTTCATCCACCGGAAGAACTAAACAGTCCGGC 59 Query 126 TTCTCATTTCTCCGGC-AAAACTCCTAAACTTCCCGGCGAAACTCTCTCCGACTTCCTCT 184 ||| ||||| ||||| ||||| ||||||||||| || ||||||||||| |||||||| | Sbjct 60 GTCTAATTTCACCGGCGAAAAC-CCTAAACTTCCGGGAGAAACTCTCTCTGACTTCCTTT 118 Query 185 CTCATCACCAAAACAATGCTTTCTCTATGAACTTCGGCGACTCCGCCG-TCTTAGCTTAC 243 |||| |||| ||| ||||||||| ||||||||||| |||||||| | |||| |||| | Sbjct 119 CTCACCACCCCGACACTGCTTTCTCAATGAACTTCGGTGACTCCGCTGTTCTT-GCTTTC 177 Query 244 GCT-CG-CCAAGAAACCTCTCTTCGTCAAAG-GTTGTTCT-GTGGACTAGATGGGATCTA 299 | | || | | ||| ||||| || |||||| | |||| | ||||| | ||||| ||||| Sbjct 178 G-TCCGTTC-ACAAAACTCTCATCATCAAAGAG-TGTT-TAGTGGAATCGATGGAATCTA 233 Query 300 CTGTATGTTTCTAGGGAG-ATTGAATAATCTCTGTACA-TTGAATC-GACAATACGGTTT 356 |||| ||||||| |||| |||||| |||||||| | | ||||| | |||||||||||| Sbjct 234 CTGTGTGTTTCT-TGGAGCATTGAACAATCTCTGCA-ATTTGAA-CAAACAATACGGTTT 290 Query 357 ATCTGGGAAGAAC-TCAAACGAGGCAATGTTTGTGATCGAAGCTTATCGAACACTTCGTG 415 |||| |||| ||| |||||||| || |||||||| ||||||||||||||||||||||||| Sbjct 291 ATCT-GGAAAAACTTCAAACGAAGCTATGTTTGTTATCGAAGCTTATCGAACACTTCGTG 349 Query 416 ATCGTGGTCCTTACCCAGCAGATCAAGTTCTTAGAGGTCTTGAGGGAAGCTTCGCTTTCG 475 ||||||||||||| ||||| ||||||||||||||||||||||| ||||| || ||||| | Sbjct 350 ATCGTGGTCCTTATCCAGCTGATCAAGTTCTTAGAGGTCTTGACGGAAGTTTTGCTTTTG 409 Query 476 TTGTCTACGATACTCAAACTTCCTCTGTTTTCT-CAGCTCTGAGTTCTGATGGAGGAGAG 534 | ||||| ||||||||||| ||||||||||| | |||||||| | |||||||||| |||| Sbjct 410 TCGTCTATGATACTCAAACCTCCTCTGTTTT-TGCAGCTCTGGGATCTGATGGAGAAGAG 468 Query 535 AGTCTT-TACTGGGGAATTTCTGGAGACGGATCTGTTGTAATGTCTGATGATATTCAGAT 593 ||| || || |||||||| ||| ||| ||||||||||| ||||||||||||||| |||| Sbjct 469 AGT-TTGTATTGGGGAATAGCTGCAGATGGATCTGTTGTTATGTCTGATGATATTAAGAT 527 Query 594 CATAAAGCAAGGCTGTGCTAAATCGTTTGCTCCTTTCCCTAAT-GGATGTATGTTTCATA 652 ||| |||||| | ||||| |||||||| || ||||| || || || ||||||||||||| Sbjct 528 CATTAAGCAAAGTTGTGCGAAATCGTTCGCGCCTTTTCC-AACCGGTTGTATGTTTCATA 586 Query 653 GTGAGACAGGGCTTAA-GAGCTTTGACCATCCGACTAATATGATGAAGGCAATGCCGAGG 711 ||||||| || || | ||| ||||| ||||||| || | ||||||||| ||||||||| Sbjct 587 GTGAGACTGGT-TTGATGAGTTTTGAGCATCCGAAAAACAAGATGAAGGCGATGCCGAGG 645 Query 712 ATTGATAGTGAAGGTGTTCTTTGTGGAGCTAG-TTTCAAAGTTGATGCTTGTTCTAAGAT 770 |||||||||||||| ||| | |||||||||| ||| ||||||||||||||||| ||||| Sbjct 646 ATTGATAGTGAAGGAGTTATATGTGGAGCTAACTTT-AAAGTTGATGCTTGTTCAAAGAT 704 Query 771 CAATAGTATCCCTAGAAGAGGAAGTGAAGCTAACTGGGCGCTGGCTAATTC 821 |||||| || || |||||||||||||||||||| ||| | || || ||||| Sbjct 705 CAATAGCATTCCAAGAAGAGGAAGTGAAGCTAATTGGTCTCTAGCGAATTC 755 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 35301821142 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5