BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G15510.1
Length=1626
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478997 jgi|Araly1|478997|fgenesh2_kg.3__1698__AT3G15510.1 2300 0.0
Ahg474413 jgi|Araly1|474413|fgenesh2_kg.1__4367__AT1G52890.1 95.3 1e-18
> Ahg478997 jgi|Araly1|478997|fgenesh2_kg.3__1698__AT3G15510.1
Length=1558
Score = 2300 bits (1245), Expect = 0.0
Identities = 1459/1559 (94%), Gaps = 27/1559 (2%)
Strand=Plus/Plus
Query 69 tcacaaaaaaaaTAGAGAGAATCATCTGAGAGAGTAGTAGTGATGATATGATCGCTTCTT 128
|||||||||||| | ||||||| |||| ||||| |||| | |||||||| |||||||
Sbjct 20 TCACAAAAAAAA-A-AGAGAATAATCTCTGAGAG-AGTA--G-TGATATGA--GCTTCTT 71
Query 129 CTCCTACAATCTCAGAAACCTCCGATCACGGTTTTAGATATCTTCTACAACGGATACAAT 188
||||||||||||||||||||||||||||||||| ||||||| || ||||||||| |||||
Sbjct 72 CTCCTACAATCTCAGAAACCTCCGATCACGGTTCTAGATAT-TT-TACAACGGA-ACAAT 128
Query 189 GGAGAGCACCGATTCTTCCGGTGGTCCACCACCGCCACAACCTAACCTTCCTCCAGGCTT 248
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 129 GGAGAGCACCGATTCTTCTGGTGGTCCTCCACCGCCACAACCTAACCTTCCTCCAGGCTT 188
Query 249 CCGGTTTCACCCTACCGACGAAGAGCTTGTTGTTCACTACCTCAAACGCAAAGCAGCCTC 308
|||||||||||| ||||| ||||||||||| ||||| ||||||||||||||||| |||||
Sbjct 189 CCGGTTTCACCCAACCGATGAAGAGCTTGTGGTTCATTACCTCAAACGCAAAGCCGCCTC 248
Query 309 TGCTCCTTTACCTGTCGCCATCATCGCCGAAGTCGATCTCTATAAATTTGATCCATGGGA 368
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 249 TGCTCCTTTACCTGTAGCCATCATCGCCGAAGTCGATCTCTATAAATTCGATCCATGGGA 308
Query 369 ACTTCCCGCTAAAGCATCGTTTGGAGAACAAGAATGGTACTTCTTTAGTCCACGAGATCG 428
||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 309 ACTTCCCGCTAAAGCGTCGTTTGGAGAACAAGAATGGTACTTCTTCAGTCCTCGAGATCG 368
Query 429 GAAGTATCCAAACGGAGCAAGACCAAACAGAGCGGCGACTTCAGGTTATTGGAAAGCGAC 488
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 369 GAAGTATCCAAACGGAGCAAGACCAAACAGAGCGGCAACTTCAGGATATTGGAAAGCGAC 428
Query 489 CGGTACAGATAAACCGGTACTTGCTTCCGACGGTAACCAAAAGGTGGGCGTGAAGAAGGC 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 429 CGGTACAGATAAACCGGTACTTGCTTCCGACGGTAACCAAAAGGTGGGCGTGAAGAAGGC 488
Query 549 ACTAGTCTTCTACAGTGGTAAACCACCAAAAGGCGTTAAAAGTGATTGGATCATGCATGA 608
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 489 ACTGGTCTTCTACAGTGGTAAACCACCAAAAGGCGTGAAAAGTGATTGGATCATGCATGA 548
Query 609 GTATCGTCTCATCGAAAACAAACCAAACAATCGACCTCCTGGCTGTGATTTCGGCAACaa 668
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 549 GTATCGTCTCATCGAAAACAAACCAAACAATCGACCTCCTGGTTGTGATTTCGGCAACAA 608
Query 669 aaaaaaCTCACTCAGACTTGATGATTGGGTGTTATGTAGAATCTACAAGAAGAACAACGC 728
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 609 GAAAAACTCACTCAGACTTGATGATTGGGTGTTATGTAGAATCTACAAGAAGAACAACGC 668
Query 729 AAGTCGACATGTTGATAACGATAAGGATCATGATATGATCGATTACATTTTCAGGAAGAT 788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 669 AAGTCGACATGTTGATAACGATAAGGATCATGATATGATCGATTACATTTTCAGGAAGAT 728
Query 789 TCCTCCGTCTTTATCAATGGCGGCTGCTTCTACAGGACTTCACCAACATCATCATAATGT 848
||||||| | ||||||||||| |||||| |||||||||||||||| ||||| ||||||||
Sbjct 729 TCCTCCGCCGTTATCAATGGCTGCTGCTGCTACAGGACTTCACCATCATCACCATAATGT 788
Query 849 CTCAAGATCAATGAATTTCTTCCCTGGCAAATTCTCCGGTGGTGGTTACGGGATTTTCTC 908
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 789 CTCCAGATCAATGAATTTCTTCCCTGGAAAATTCTCCGGTGGTGGTTACGGGATTTTCTC 848
Query 909 TGACGGTGGTAACACGAGTATATACGACGGCGGTGGCATGATCAACAATATTGGTACTGA 968
|||||| |||||||||||| |||||||||||||||||||||||||||| || ||||| ||
Sbjct 849 TGACGGAGGTAACACGAGTTTATACGACGGCGGTGGCATGATCAACAACATCGGTACAGA 908
Query 969 CTCAGTAGATCACGACAATAACGCTGACGTCGTTGGTTTAAATCATGCTTCGTCGTCAGG 1028
|||||| | ||||||||||||||| |||||||||||||| |||| |||||||||||||||
Sbjct 909 CTCAGTGGGTCACGACAATAACGCCGACGTCGTTGGTTTGAATCCTGCTTCGTCGTCAGG 968
Query 1029 TCCTATGATGATGGCGAATTTGAAACGAACTCTCCCGGTGCCGTATTGGCCTGTAGCAGA 1088
||| ||||||||||||| | |||||||| |||| ||||||||||||||||| ||||||||
Sbjct 969 TCCGATGATGATGGCGAGTCTGAAACGAGCTCTTCCGGTGCCGTATTGGCCGGTAGCAGA 1028
Query 1089 TGAGGAGCAAGATGCATCTCCGAGCAAACGGTTTCACGGTGTaggaggaggaggaggagA 1148
|||||||||||||||||||||||||| ||||||||||| | | ||||||||||||||
Sbjct 1029 GGAGGAGCAAGATGCATCTCCGAGCAAGCGGTTTCACGGCG--GT-GGAGGAGGAGGAGA 1085
Query 1149 TTGTTCGAACATGTCTTCCTCCATGATGGAAGAGACTCCACCATTGATGCAACAACAAGG 1208
|||||||||||||||||| || |||||||||||| |||||||||||||||||||||||||
Sbjct 1086 TTGTTCGAACATGTCTTCTTCGATGATGGAAGAGCCTCCACCATTGATGCAACAACAAGG 1145
Query 1209 TGGTGTGTTAGGAGATGGATTATTCAGAACGACATCGTACCAATTACCCGGTTTAAATTG 1268
|||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1146 TGGTGTCTTAGGAGATGGATTGTTCAGAACGACGTCGTACCAATTACCCGGTTTAAATTG 1205
Query 1269 GTACTCTTCTTAATCAAATGTGTTTCGCCGCCGGTGTGAAGAATTTTCCGGTGACAGTGA 1328
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 1206 GTACTCTTCTTAATCAAATGTGTTTCGCTGCCGGTGTGAAGAATTTTCCGGTGAGAGTGA 1265
Query 1329 AGAtttttttCCGATTGGTGGGGTCATTTGCATGCATTATATAATTTGAGATTTGTGTAT 1388
||| ||||| ||||||||||||| ||||||||| || ||| ||||||||||||||||||
Sbjct 1266 AGAATTTTT-CCGATTGGTGGGGACATTTGCATT-AT-ATA-AATTTGAGATTTGTGTAT 1321
Query 1389 ATGTTTTGGGTTAATTAATT-GGTCACAGGGG-TTAGAGGAAGAAGATTATTTAGAGAGC 1446
|||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||
Sbjct 1322 ATGTTTTGGGTTAATTAATTTGGTCATAGGGGGTTAGAGGAAGAAGATTATTTAGAGAGC 1381
Query 1447 GGAGAAGAAGTGAGGCAACAT-ATA--GAAAACATAGGTTTAAAAAA-TATTACTGTTTG 1502
|||||||||||||||||||| ||| ||||||||||| ||||||| |||||||||||
Sbjct 1382 GGAGAAGAAGTGAGGCAACAACATAAAGAAAACATAGGATTAAAAATGTATTACTGTTTC 1441
Query 1503 TTAAGTTTAAT-GATTAAATGTATAAATCTTATACTTAGATGTTTATATATAGTTTGTAT 1561
|||| |||||| | || |||||||||||| ||||||||||||||| ||||| ||||||||
Sbjct 1442 TTAATTTTAATAG-TTGAATGTATAAATCATATACTTAGATGTTTTTATATTGTTTGTAT 1500
Query 1562 AGATGCATATAGTTTCTCTCAATGCTATTTTGAGATTGTATTTTCTTGTAAAGGAAATG 1620
||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1501 AGATGCATATAGTCT-TCTCAATGATATTTTGAGATTGTATTTTCTTGTAAAGGAAATG 1558
> Ahg474413 jgi|Araly1|474413|fgenesh2_kg.1__4367__AT1G52890.1
Length=1232
Score = 95.3 bits (51), Expect = 1e-18
Identities = 207/279 (74%), Gaps = 23/279 (8%)
Strand=Plus/Plus
Query 235 CTT-CCTCCAGGCTTCCGGTTTCACCCTACCGACGAAGAGCTTGTTGTTCACTACCTCAA 293
||| || ||||| ||||| ||| |||| ||||| ||||||||| | ||||| || || |
Sbjct 78 CTTACCACCAGGTTTCCGATTTTACCCGACCGATGAAGAGCTTATGGTTCAATATCT-AT 136
Query 294 AC-GCAAAGCAGCCTCTGCT-C-CTTTACCT-GTC-GCCATCATCGCCGAAGTCGATCTC 348
| | ||||||| || | | | ||| ||| || | | ||||||||||| |||||||
Sbjct 137 GCAGAAAAGCAG-CT-GGTTACGATTTCCCTCTTCAG-C-TCATCGCCGAAATCGATCTT 192
Query 349 TATAAATTTGATCCATGGGAACTT-CCCGCTAAAGCATCGTTTGGAGAACAAGAATGGTA 407
|| || ||||||||||||| || || ||| |||| ||||||||| ||||||||||
Sbjct 193 TACAAGTTTGATCCATGGG-TTTTACCAAATAAGGCATTATTTGGAGAAAAAGAATGGTA 251
Query 408 CTTCTTT-AGTCC-ACGAGATCGGAAGTATCCAAACGGAG-CAAGACC-AAACAGAG-CG 462
|| ||| ||||| | | ||| | || || |||||||| | ||||||| || | | | |
Sbjct 252 -TTTTTTCAGTCCGA-GGGATAGAAAATACCCAAACGG-GTCAAGACCGAATC-GGGTTG 307
Query 463 GCGACTTCAGGTTATTGGAAAGCGACCGGTACAGATAAA 501
|| || ||||| ||||| || || ||||| ||||||
Sbjct 308 CCG-GGTCGGGTTACTGGAAGGCTACGGGTACGGATAAA 345
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60944392000
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5