BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G15520.1 Length=1615 Score E Sequences producing significant alignments: (Bits) Value Ahg929358 jgi|Araly1|929358|scaffold_301815.1 2165 0.0 Ahg478998 jgi|Araly1|478998|fgenesh2_kg.3__1699__AT3G15518.1 176 4e-43 > Ahg929358 jgi|Araly1|929358|scaffold_301815.1 Length=1432 Score = 2165 bits (1172), Expect = 0.0 Identities = 1346/1429 (94%), Gaps = 15/1429 (1%) Strand=Plus/Plus Query 55 AACTTGCAAGCTTCCCATCAATGGCTTCTCCTTTGTCTTCTTCCACCGTCGTCTCTCACC 114 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 AACTTGCAAGCTTCACATCAATGGCTTCTCCTTTGTCTTCTTCCACCGTCGTCTCTCACC 60 Query 115 GCCttttttttCTCCATCCTTCACCTCTCAATCGCAAATTCCTCTTCGTAAAACCCAAAT 174 | |||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||| Sbjct 61 GGATTTTCTTTCTCCACCCTTCACCTCTCAATCGTAAATTCCTCTTCGTAAAACCCAAAT 120 Query 175 TACCCTTTAATCGAACCAATTCCGGAGATTTCCGCATGCGTCTGCATTCTACATCCAGTA 234 ||||||||||||||||||||||||||||||||||||||| ||| ||| | || Sbjct 121 TACCCTTTAATCGAACCAATTCCGGAGATTTCCGCATGC-AATGC--TCT--A---AG-- 170 Query 235 AAACTGGCACTAAGGAACTTATACATTCCTGCAATTCTTCAATTGATTCGAAGTTGAACA 294 | |||||| ||||||| |||||||||||||||||||||||||||||| ||||||||| Sbjct 171 --ATTGGCACCAAGGAACATATACATTCCTGCAATTCTTCAATTGATTCAAAGTTGAACC 228 Query 295 CTTTTGAAGCTGGATCTAAAAACCTCGAGAAATTGGTTGCAACGATATTGATATTTGTTC 354 ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 229 CTTTTGAAGATGGATTTAAAAACCTCGAGAAATTGGTTGCAACGATATTGATATTTGTTC 288 Query 355 AAGTATGGTCTCCATTGCCCTTGTTTGGTCTAGACTCTGCTTACATTTCACCTGCAGAGG 414 |||| |||||||||||||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 289 AAGTTTGGTCTCCATTGCCCTTGCTTGGTCTAGACGCTGCTTACATTTCACCTGCAGAGG 348 Query 415 CAGTTCTTTACTCTCCGGACACTAAAGTTCCAAGAACTGGAGAACTTGCTCTAAGAAGGG 474 |||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||| Sbjct 349 CAGTTCTTTACTCTCCGGACACGAAAGTTCCAAGAACTGGCGAACTTGCTCTAAGGAGGG 408 Query 475 CTATACCTGCTAATCCAAGCATGAAGATAATACAGGCTTCGTTGGAAGATATATCATATC 534 |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 409 CTATTCCTGCTAATCCAAGCATGAAGATAATACAGGCTTCATTGGAAGATATATCATATC 468 Query 535 TTCTCAGAATTCCTCAAAGGAAGCCTTACGGTACCATGGAGAGCAATGTAAAGAAAGCTT 594 ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| Sbjct 469 TTCTCAGAATTCCTCAAAGAAAGCCTTATGGTACCATGGAGAGCAATGTAAAGAAAGCTC 528 Query 595 TAAAGGTGGCTATAGATGATAAGGATAAGATCTTGGCTAGTATACCAGTAGACTTAAAAG 654 |||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||| Sbjct 529 TAAAGGTGGCTATAGACGATAAGGATAAGATATTGGCTAGTATACCAGCAGACTTAAAAG 588 Query 655 ACAAGGGCTCAGAACTGTATACAACTCTGATTGATGGAAAGGGTGGACTACAAGCACTTA 714 |||||||||||||||||||| |||||||||||||||| |||||||| || |||||||||| Sbjct 589 ACAAGGGCTCAGAACTGTATGCAACTCTGATTGATGGCAAGGGTGGCCTTCAAGCACTTA 648 Query 715 TAACGTCTATTAAGAAACAAGATCCTGATAAAGTGTCCCTTGGGCTGGCAGCATCACTAG 774 |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 649 TAACATCTATTAAGAAACAAGATCCTGATAAAGTGTCCCTTGGCCTGGCAGCATCACTAG 708 Query 775 ATACTGTTGCGGATCTGGAGTTATTACAGGCATCTGGGTTGTCATTTCTACTTCCTCAGC 834 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 709 ATACTGTTGCGGATCTGGAGTTATTACAGGCATCTGGGTTGTCATTTTTACTTCCTCAGC 768 Query 835 AGTACTTAAACTATCCCAGGTTAGCAGGAAGAGGAACTGTGGAAATCACCATTGAGAAAG 894 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 769 AATACTTAAACTATCCCAGGTTAGCAGGAAGAGGAACTGTGGAAATCACCATTGAGAAAG 828 Query 895 CTGATGGTTCGACTTTTTCAGCTGAAGCTGGAGGTGATCAAAGAAAGAGTGCTACAGTAC 954 ||||||||| || |||||||||| |||||| |||||||||||||||||||||||| | | Sbjct 829 GTGATGGTTCAACATTTTCAGCTGCAGCTGGGGGTGATCAAAGAAAGAGTGCTACAATCC 888 Query 955 AGATCGTTATAGATGGATATTCAGCACCTCTAACCGCAGGGAATTTTGCAAAACTGGTAA 1014 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 889 AGATCGTTATAGATGGATATTCAGCACCTCTAACAGCAGGGAATTTTGCAAAACTGGTAA 948 Query 1015 CTAGCGGTGCATATGATGGAGCCAAACTCAATACTGTAAACCAGGCTGTTATCACAGAGG 1074 |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct 949 CTAGCGGTGCATATGATGGAGCCAAACTCAATACAGTGAACCAGGCTGTTATCACAGAGG 1008 Query 1075 ATGGGAGTGGTAAGGTGGAGAGTGTTAGTGTTCCATTGGAAGTAATGCCTTCTGGACAAT 1134 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1009 ATGGGAGTGGTAAGGTGGAGAGTGTTAGTGTTCCATTGGAAGTAATGCCTTCTGGACAGT 1068 Query 1135 TCGAACCTCTCTACAGAACGCCATTGAGTGTCCAGGATGGGGAGTTACCAGTGCTTCCTT 1194 |||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||| Sbjct 1069 TCGAACCTCTCTACCGAACCCCATTGAGTGTCCAGGATGGGGAGTTACCAGTTCTTCCTT 1128 Query 1195 TATCGGTTTATGGAGCTGTAGCAATGGCGCACAGCGAAAACTCAGAAGAATACTCTTCTC 1254 ||||||||||||||||||| |||||||||||||| |||| |||||| ||||||||||||| Sbjct 1129 TATCGGTTTATGGAGCTGTTGCAATGGCGCACAGTGAAACCTCAGATGAATACTCTTCTC 1188 Query 1255 CTTACCAATTCTTCTTCTACCTATACGATAAAAGAAACTCTGGCTTAGGAGGATTATCCT 1314 ||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||| Sbjct 1189 CTTACCAATTCTTCTTCTACCTATACGATAAAAGAAATTCTGGCTTGGGAGGTTTATCCT 1248 Query 1315 TTGACGAAGGACAGTTCTCGGTCTTCGGATACACAATAGCAGGAAAAGATATTCTCGGGC 1374 |||||||||| ||||||||||| || |||||||||| |||||||||||||||||| |||| Sbjct 1249 TTGACGAAGGGCAGTTCTCGGTTTTTGGATACACAACAGCAGGAAAAGATATTCTTGGGC 1308 Query 1375 AGATCAAGACTGGAGATATCATCAAATCTGCAAAACTAATTGAAGGCCAAGACCGCCTTA 1434 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1309 AGATCAAGACTGGAGATATCATCAAATCTGCAAAACTAATTGAAGGCCAAGATCGCCTTA 1368 Query 1435 GTTTGCCTGTTCAAAACAAC-A-A-CATCAACGAATCCACTTGATTCTT 1480 |||||||| |||||||||| | | ||||||| ||||||||||||||| Sbjct 1369 TTTTGCCTGCTCAAAACAACTACAACATCAACTCATCCACTTGATTCTT 1417 > Ahg478998 jgi|Araly1|478998|fgenesh2_kg.3__1699__AT3G15518.1 Length=596 Score = 176 bits (95), Expect = 4e-43 Identities = 104/108 (96%), Gaps = 2/108 (2%) Strand=Plus/Minus Query 1504 TTCTAAGACTTTCTTGTCCATAAACAGAGTGCTAAGAGTTTCAACTCTCTGCAATTGGGT 1563 ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| Sbjct 596 TTCTAAGACTTTCTTGTCCATAAACAGAGTGCT-A-AGTTTCAACTCTCTGCAATTGGGT 539 Query 1564 ATGATTCTTATTGGATTTCCAACATTACAAGAAAAAGAAAAGCTTTGA 1611 ||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 538 CTGATTCTTATTGGATTTCCAACAATACAAGAAAAAGAAAAGCTTTGA 491 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 60525399305 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5