BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G15570.1 Length=1999 Score E Sequences producing significant alignments: (Bits) Value Ahg929366 jgi|Araly1|929366|scaffold_301823.1 2130 0.0 Ahg904498 jgi|Araly1|904498|Al_scaffold_0003_1626 418 8e-116 > Ahg929366 jgi|Araly1|929366|scaffold_301823.1 Length=1396 Score = 2130 bits (1153), Expect = 0.0 Identities = 1323/1405 (94%), Gaps = 12/1405 (1%) Strand=Plus/Plus Query 199 TGTGAAGaaaaaaaCTCGAAACAAATGAAGAAAACACTTTCGCCGGAACCCGTCACCATC 258 |||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||| Sbjct 1 TGTGAA-CAAAAAACTCGAAACAAATGAAGAAAACACCTTCGCCGGAACCAGTCACCATC 59 Query 259 TACGGCAATC-GCCAAGAAACCTTCGTCGGTGATATGGAGTACTACACTTACTTCGACGA 317 |||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 60 TACGGCAATCAG-CAAGAAACCTTCGTCGGAGATATGGAGTACTACACTTACTTCGACGA 118 Query 318 ATCTTGTATCCAAGACATGAACTATTTCGTCAAAACAATCACCGGCATCAAATCCAAAGG 377 |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 119 ATCTTGTATCCATGACATGAACTATTTCGTCAAAACAATCACCGGAATCAAATCCAAAGG 178 Query 378 AATCAGACCAGACCTTATCGGTTCCATCATCGCTCATTACGCTTCAAAATGGCTCCCTGA 437 |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 179 AATCCGACCAGACCTCATCGGTTCCATCATCGCTCATTACGCTTCAAAATGGCTCCCTGA 238 Query 438 TCTCTCCGGCAATGTCTCCGCCATTATTTCCTCCACCTCCTTAGAATCCAAGAACAACCA 497 |||||||||||| ||||||||||| | || ||||||||| |||||||||||||| ||| Sbjct 239 TCTCTCCGGCAACGTCTCCGCCATCA-TT--TCCACCTCCGTAGAATCCAAGAACCACCT 295 Query 498 CAATGACACACAGCCAGAGAGCGTCACTGCATCTGTAATGAAGAAACGGTTTTTCGTCGA 557 ||||||||||||||| ||||||||||| || ||||| ||||||||||| ||||||||||| Sbjct 296 CAATGACACACAGCCGGAGAGCGTCACGGCGTCTGTTATGAAGAAACGATTTTTCGTCGA 355 Query 558 AACACTAATCGGAATCCTCCCACCGGAGAAAGACTCTGTTCCTTGCAATTTCCTCCTCCG 617 ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| Sbjct 356 AACACTAATCGGAATCCTCCCGCCGGAGAAAGACTCTGTTCCTTGCAATTTCCTTCTCCG 415 Query 618 TCTCCTCAGGACAGCGAAAATGGTCGGAGCTAATCCGAATTATTTAACGGAGCTTGAAAC 677 |||||||||| |||||||||||||||||||||||||||| || ||||||||||||||||| Sbjct 416 TCTCCTCAGGGCAGCGAAAATGGTCGGAGCTAATCCGAACTACTTAACGGAGCTTGAAAC 475 Query 678 CAGAGTATCGTGGCAGCTCGACCAAGCTTCTCTCAAGGAGCTTATGATACCTTCCTTCAG 737 |||||| ||||||||||| |||||||| |||||||||||||||||||||||||| ||||| Sbjct 476 CAGAGTCTCGTGGCAGCTTGACCAAGCCTCTCTCAAGGAGCTTATGATACCTTCTTTCAG 535 Query 738 CTACACGTCTGGTACTTTGCTTGACATTGAGCTTGTGACGCGTCTCGTGAACAAGTTTTC 797 ||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||| | Sbjct 536 CTACACGTCTGGTACTTTGCTTGACGTTGAGCTTGTGACACGTCTCGTGAACAAATTTGC 595 Query 798 TGGATTGGATAGTGAAGGTGTTAAAACC-GCTGCGGCTCTTGTTAAAGTGGCCAAGCTTG 856 |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| Sbjct 596 TGGATTGGATAGTGAAGGTGTTAAAACCAG-TGCGGCTCTTGTTAAAGTGGCCAAGCTTG 654 Query 857 TTGACTCCTACCTCGCTGAAGCTGCCGTTGACGGTGGTTTAGCTTTACCGGAGTTTATTT 916 |||| || |||||||||||||| ||||||||||||||||| ||||||||||||||||| | Sbjct 655 TTGATTCGTACCTCGCTGAAGCAGCCGTTGACGGTGGTTTGGCTTTACCGGAGTTTATAT 714 Query 917 CCTTAATCACAGCTCTTCCTAGCCATGCTCGTACTACAGAGGATGGCTTGTACCGAGCCA 976 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 715 CCTTAATCACAGCTCTTCCTAGCCATGCTCGTACTACAGAGGATGGCTTGTACCGGGCCA 774 Query 977 TTGATACATATCTCAAGGCACATCCTCAGGTGTTGAAGCAAGAAAGGAAGGAACTTTGTA 1036 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 775 TTGATACATATCTCAAGGCACATCCTCAGGTGTTGAAGCAAGAAAGGAAGGAACTTTGCA 834 Query 1037 GACTTATTGATAGCAGAAAGTTATCACCGGAAGCAGCTCTTCACGCGGCTCAGAATGATC 1096 | |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| Sbjct 835 GGCTTATTGATAGCAGAAAGCTATCACCAGAAGCAGCTCTTCACGCGGCTCAGAATGATC 894 Query 1097 GTTTACCGGTGAGAGCAATCATTGGAGTGTTGTTCACTGAGCAGACAAAGCTAAGTCGTC 1156 ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| Sbjct 895 GTTTACCGGTGAGAGCAATCATTAGAGTTTTGTTCACTGAGCAGACAAAGCTAAGTCGTC 954 Query 1157 ACATTGACTGTAATAGTAGCTCGATAAGCAGCACTACGAGGAGTCCAACAAACGCTTCTG 1216 |||||||||| ||| ||||||| ||||||||||| |||| ||||||||||||| |||||| Sbjct 955 ACATTGACTGGAATGGTAGCTCTATAAGCAGCACGACGAAGAGTCCAACAAACCCTTCTG 1014 Query 1217 GTTCACATTACCTCGAGGGAGGTTCTGCAGCGCGGTGTTTGTCTAAACGTGAGATGAATG 1276 ||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1015 GTTCACATTACTTGGAGGGAGGTTCTGCAGCGCGGTGCTTGTCTAAACGTGAGATGAATG 1074 Query 1277 TTCAACAAGCAGAGATAAGAAGGCTACGGGAGGATGTGGTGAGGCTGCAGAGTCAGTGTG 1336 |||| |||||||||||||||||||| || || |||||||||||||||||||| ||||| Sbjct 1075 TTCAGCAAGCAGAGATAAGAAGGCTTCGAGAAGATGTGGTGAGGCTGCAGAGCCAGTGCA 1134 Query 1337 GCGCTATGCATTTCCAGCTGGAGAGGCTTATGGAGAAGAAGAGTAGTGGTGGGAGTAAAG 1396 | ||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||| Sbjct 1135 GTGCTATGCATTTGCAGGTGGAGAGGCTTATGGAGAAGAAGAGTAGTGGTGGAAGTAAAG 1194 Query 1397 GTTTTTTCCGGTGGAAGAGGCTCGGGTTAGTACCGTCAATTAGAGGAAGTGTTAGTGTTG 1456 | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1195 GGTTTTTCCGGTGGAAGAGGCTCGGGTTAGTACCGTCAATTAGAGGAAGTGTTAGCGTTG 1254 Query 1457 AAAAGGGCGAGGAAGAATCTGGTGACAATGGTGAAGGATTTGAGCCACGGACTCCTGGTA 1516 |||| || ||||||||||||||||| |||||||||||||||||| ||||||||||| | Sbjct 1255 AAAAAGGTGAGGAAGAATCTGGTGA---TGGTGAAGGATTTGAGCCTCGGACTCCTGGGA 1311 Query 1517 ATATGAAGACAAGGCTTGTCAAAGGAAGAACAACACCTTCAAGGTGGAGAAAATCTATGT 1576 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1312 ATATGAAGACAAGGCTTGTCAAAGGAAGAACGACACCTTCAAGGTGGAGAAAATCTATGT 1371 Query 1577 CTTAA-TCTTGAATTAATGAAAACA 1600 ||||| ||||||||||||||||||| Sbjct 1372 CTTAAATCTTGAATTAATGAAAACA 1396 > Ahg904498 jgi|Araly1|904498|Al_scaffold_0003_1626 Length=2184 Score = 418 bits (226), Expect = 8e-116 Identities = 240/247 (97%), Gaps = 0/247 (0%) Strand=Plus/Minus Query 1753 CTAGAATTTGACAGCTCGTTTGATTGTTTGAAGAGAAGACTTGATGAAGTTGTTCTTGAC 1812 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || Sbjct 2184 CTAGAATTTGACAGCTCGTTTGATTGATTGAAGAGAAGACTTGATGAAGTTGTTCTTAAC 2125 Query 1813 AAGATACTCATTCTCATCGTCGTTTCCTGAAACCACTGGCTTCTTCCTGATGCAGTCTAT 1872 ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 2124 AAGATACTCGTTCTCATCGTCGTTTCTTGAAACCACTGGCTTCTTCCTGATGCAGTCTAT 2065 Query 1873 TCCCTTTTTCATTCCAAAGATGAGTGATGGAGATGATGGAATCCTTGTGAAGGTTCTAGC 1932 ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| Sbjct 2064 TCCCTTTTTCATTCCGAAGATGAGTGATGGAGATGATGGAATCCTTCTGAAGGTTCTAGC 2005 Query 1933 ACTCTCTGATCTCTTCACCACTTTGTCTCTGCCACTCTTCTCTGGTGTGTTCTTTAAATC 1992 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 2004 ACTCTCTGATCTCTTCACCACTTTGTCTCTGCCGCTCTTCTCTGGTGTGTTCTTTAAATC 1945 Query 1993 AAAACTC 1999 ||||||| Sbjct 1944 AAAACTC 1938 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 75152053385 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5