BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G15580.1 Length=623 Score E Sequences producing significant alignments: (Bits) Value Ahg479007 jgi|Araly1|479007|fgenesh2_kg.3__1708__AT3G15580.1 730 0.0 > Ahg479007 jgi|Araly1|479007|fgenesh2_kg.3__1708__AT3G15580.1 Length=534 Score = 730 bits (395), Expect = 0.0 Identities = 499/547 (91%), Gaps = 15/547 (3%) Strand=Plus/Plus Query 33 TTGCTTTTGAGAGACGGAGACAAAAACACACACGACGAAGAAATCTCCGGGCGGTCGAAG 92 ||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||| Sbjct 1 TTGCTTTCAAGAGACGGAGACAAAAACACACACGACGAAGAAATCTCCCGGTGGTCGAAA 60 Query 93 AAGATGAAATCGTTCAAGGAACAATACACGTT-GGATGAAAGGCTCGCGGAGTCGCGGGA 151 |||||||||||||||||||||||||||||||| || |||||||||||| || ||||| || Sbjct 61 AAGATGAAATCGTTCAAGGAACAATACACGTTAGG-TGAAAGGCTCGCAGAATCGCGAGA 119 Query 152 GATAATCGCTAAGTACCCTACTCGGATTCCAGTAATTGCTGAGAAGTATTGCAAAACGGA 211 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || Sbjct 120 GATAATCGCTAAGTATCCTACTCGGATTCCAGTAATTGCTGAGAAGTATTGCAAAACAGA 179 Query 212 TCTGCCTGCCATCGAGAAAAAGAAGTTTCTGGTTCCAAGAGATATGTCAGTTGGCCAATT 271 ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 180 TCTACCTGCCATCGAGAAAAAGAAGTTTCTGGTTCCAAGAGATATGTCAGTTGGTCAATT 239 Query 272 CATCTACATATTGAGTGCTAGGTTACATTTGTCTCCTGGTAAAGCCTTATTCGTGTTTGT 331 |||||| || |||||||||||||||||||| ||||||||| |||| |||||||||||||| Sbjct 240 CATCTATATCTTGAGTGCTAGGTTACATTTATCTCCTGGTCAAGCGTTATTCGTGTTTGT 299 Query 332 CAACAACACTCTCCCTCAAACTGCTGCTCTGATGGACTCGGTCTACGAATCTTACAAAGA 391 ||||||||||||||||||||||||||||||||||| |||||||| || || |||||||| Sbjct 300 GAACAACACTCTCCCTCAAACTGCTGCTCTGATGGATTCGGTCTATGAGTCGTACAAAGA 359 Query 392 TGATGATGGATTCGTTTACATGTGCTATAGCAGTGAGAAAACCTTTGGTTGATCCAATAA 451 || ||||| || ||||||||||||||||||||||||||||||||||| ||| |||| || Sbjct 360 CGAAGATGGGTTTGTTTACATGTGCTATAGCAGTGAGAAAACCTTTGGCTGAGCCAA-AA 418 Query 452 TGATGTTAGTGTCTGTGTACATATACTTT-AAACATAAGATGTTCACTACATCAAAAGAC 510 |||||||||||| ||||||||||| ||||||||| ||| ||||||||| |||||| Sbjct 419 TGATGTTAGTGT------ACATATACTTTGAAACATAAGCTGTACACTACATCCAAAGAC 472 Query 511 ATCAAACACTTGTTAAGCTTTATATGACTGCTGCTTGTTTTATCCTTAGACTTTGTTCAT 570 | ||||| |||||||||||| |||| |||||| | |||||||||||||||||||||||| Sbjct 473 A-CAAACTCTTGTTAAGCTT-ATATTACTGCT--T-GTTTTATCCTTAGACTTTGTTCAT 527 Query 571 CTGTGCA 577 ||||||| Sbjct 528 CTGTGCA 534 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 22797504366 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5