BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G15640.1
Length=1068
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479016 jgi|Araly1|479016|fgenesh2_kg.3__1717__AT3G15640.1 1415 0.0
> Ahg479016 jgi|Araly1|479016|fgenesh2_kg.3__1717__AT3G15640.1
Length=1027
Score = 1415 bits (766), Expect = 0.0
Identities = 875/926 (94%), Gaps = 13/926 (1%)
Strand=Plus/Plus
Query 150 TCATCATCATCACCATGTGGAGAAGAATCGTCTCCTCTCAGCTCAAAACCCTAGCCGCCG 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 107 TCATCATCATCACCATGTGGAGAAGAATCGTCTCCTCTCAGCTCAAAACCCTAGCCGCCG 166
Query 210 A--T-GTCGTCGCTGCTTCTCCTCGTCGATCGATAGCCGCCACCACCAGACCTGTCGGTT 266
| | |||||||||||||||||||||||||| |||||| ||||| ||||| |||||||
Sbjct 167 ATGTCGTCGTCGCTGCTTCTCCTCGTCGATCAATAGCCACCACCGTTAGACCCGTCGGTT 226
Query 267 TCTATCTCGCCGCCAATCGATCAGCCATTTCCGCATCTTCTTTCGTTATCCCTCGTCGTT 326
|||| ||||| ||||||||||||||||||||||| |||||||||||||||||||| | ||
Sbjct 227 TCTACCTCGCTGCCAATCGATCAGCCATTTCCGCTTCTTCTTTCGTTATCCCTCGCCATT 286
Query 327 TCAGCTCCGATTCAGTAGAGACTCCTGCGACGAAGAAGGTGGAGGATGTAATGCCCATTG 386
|||||||||| ||||| ||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 287 TCAGCTCCGAATCAGTGGAGACTCCTGCGAAGAAGAAGGTGGAGGATGTAATGCCAATTG 346
Query 387 CGACTGGACACGAGAAGGAAGAGCTTGAAGCTGAACTTGAGGGAAGGAGGCTGGATGATA 446
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 347 CAACTGGACACGAGAAGGAGGAGCTTGAAGCTGAACTTGAGGGAAGGAGGCTGGATGATA 406
Query 447 TTGACTTCCCTGAAGGTCCTTTTGGAACTAAGGAAGCTCCTGCTATTGTGAAGTCCTACT 506
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 407 TTGACTTCCCTGAAGGTCCTTTTGGAACAAAGGAAGCTCCAGCTATTGTGAAGTCCTACT 466
Query 507 ATGACAAGCGAATTGTGGGCTGCCCTGGTGGTGAAGGCGAGGACGAGCACGATGTTGTCT 566
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 467 ATGACAAGCGAATTGTGGGATGCCCTGGTGGTGAAGGCGAGGACGAGCACGATGTTGTCT 526
Query 567 GGTTCTGGCTGGAGAAAGGAAAGTCCTTTGAATGCCCGGTTTGCACTCAGTACTTTGAGC 626
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 527 GGTTCTGGCTGGAGAAAGGAAAGTCTTTTGAATGCCCGGTTTGCACTCAGTACTTTGAGC 586
Query 627 TGGAAGTGGTTGGTCCTGGTGGTCCTCCGGATGGTCACGGTGACGAAGACGATGAGCACC 686
|||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||
Sbjct 587 TGGAAGTGGTTGGTCCTGGTGGGCCTCCAGATGGTCACGGTGATGAAGACGATGAGCACC 646
Query 687 ACCACTGATTCCGGCCTCTCCCTTGCCGCAAAtttttctttttttATTTGCACATTTTCA 746
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 647 ACCACTGATTCCTGCCTCTCCCTTGCCGCAAATTTTTCTTTTTT-ATTTGCACATTTTCA 705
Query 747 TATCTTT-AAAAATTTTATGAATGGAATAAAACAAAAT-ATCTACCGTTTTGGTGAAACA 804
||| ||| ||||| ||||||| |||||||||| || || |||| ||||||||||||||||
Sbjct 706 TATATTTTAAAAAATTTATGACTGGAATAAAA-AAGATTATCTGCCGTTTTGGTGAAACA 764
Query 805 CAGTTGAAAATGTTTTTTGATCTTTTTAGAACAAGACTCGGCATCAGAGTTTCCCAAGTG 864
||||||||||||||||| |||| |||||||||||||||||| |||||||||||| |||||
Sbjct 765 CAGTTGAAAATGTTTTT-GATCCTTTTAGAACAAGACTCGGTATCAGAGTTTCCAAAGTG 823
Query 865 CCAAAACTCTTATGACCGTTGTTTTTATTTTTGTAACACTCTTGAATCAGAATCAGAATC 924
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 824 CCATAACTCTTATGACCGTTGTTTTTATTTTTGTAACACTCTTGAATCAGAATCAGAATC 883
Query 925 ATTCTTGGCTTTTGCTTATTATATGATTCACCTTTTA-TTT-ATTTTTATGGTTCGATGT 982
||||||| |||||||||||||||||| |||||||||| ||| ||||| ||||||||||||
Sbjct 884 ATTCTTGCCTTTTGCTTATTATATGACTCACCTTTTAATTTTATTTT-ATGGTTCGATGT 942
Query 983 CTTTT-CATATAGGGACGTTTTGATCGTGTCCTTGATTCCTTGTGAACGGTCATATAATT 1041
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 943 CTTTTTCATATAGGGACGTTTTGATCGTGTCCTTGATTCCTTGTGAACGGTCATATTATT 1002
Query 1042 CAATAGATTATAGAAATTCCAATTTT 1067
||||||||||||||||| ||| ||||
Sbjct 1003 CAATAGATTATAGAAATACCA-TTTT 1027
Score = 106 bits (57), Expect = 4e-22
Identities = 104/123 (85%), Gaps = 17/123 (14%)
Strand=Plus/Plus
Query 1 AATTCTAAATTAAGAATCTCTCTAATCTCTTCCCAAAGAAGAATCATCACTGAGGAAGAA 60
|||||||||||||||||||||||| | || ||||||||||| | | |||||
Sbjct 1 AATTCTAAATTAAGAATCTCTCTATTTTC-TCCCAAAGAAG-------A---A--AAGAA 47
Query 61 TAAAACATTTGGGGAGTTTCTTCGCTAATCCTTCAAGGTGTGACCTGAGAATCACAACAC 120
|||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||
Sbjct 48 TAAAACATTTGGGG-G--T-TTCGCTAATCCTTCAAGGTGTGACCTGAGAATCACAACAC 103
Query 121 AAA 123
|||
Sbjct 104 AAA 106
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39762202431
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5