BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G15790.1
Length=1182
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929391 jgi|Araly1|929391|scaffold_301848.1 1048 0.0
> Ahg929391 jgi|Araly1|929391|scaffold_301848.1
Length=811
Score = 1048 bits (567), Expect = 0.0
Identities = 747/826 (90%), Gaps = 44/826 (5%)
Strand=Plus/Plus
Query 82 TTGCTAAAGGGAAA-GGAGAGAGATGGGTGGTGAAGAGGAAGTTGTTTCTGTTGAGCTAC 140
|||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1 TTGCTAAA-GGAAAGGGAGAGAGATGGGTGGTGAAGAGGAAGTTGTATCTGTTGAGCTAC 59
Query 141 CAGCACCTTCTTCATGGAAGAAATTGTTTTACCCCAACAAAGTGGGTTCAGTGAAGAAAA 200
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 60 CAGCACCTTCTTCATGGAAGAAATTGTTTTACCCGAACAAAGTGGGTTCAGTGAAGAAAA 119
Query 201 CAGAGGTTGTGTTTGTGGCTCCAACGGGTGAGGAGATTAGTAACAGAAAGCAGCTGGAGC 260
||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 120 CAGAGATTGTGTTTGTTGCTCCAACGGGTGAGGAGATCAGTAACAGAAAGCAGCTGGAGC 179
Query 261 AGTATCTCAAATCGCACCCTGGAAACCCCGCGATCGCAGAGTTTGATTGGACGACTAGTG 320
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 180 AGTATCTCAAATCGCACCCTGGAAACCCCGCGATCGCTGAGTTTGATTGGACGACTAGTG 239
Query 321 GGACACCTAGGAGATCTGCAAGAATCAGTGAGAAGACTAAGGCTACGCCGTCACCAGATA 380
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 240 GGACACCTAGGAGATCTGCAAGAATCAGCGAGAAGACTAAGGCTACGCCGTCACCAGATA 299
Query 381 AAGAGCCACCCAAGAAGCGAGGTAGAACCAAATCTCCAGTGTCAAAGAAAGATGCAGAAG 440
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 300 AAGAGCCACCCAAGAAGCGAGGTAGAACCAAATCTTCAGGGTCAAAGAAAGATGCAGAAG 359
Query 441 GTGAGAAATCAGAGGGAGGAGGAGAGGAAAACTCTCATGTGAAAGATACTGAAATGAATC 500
||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||
Sbjct 360 GTGAGAAATCAGAGGGAGGAG-AG-G-AAAACTCTCATGTGAAAGATACTGAAATGAATC 416
Query 501 CTCCAGAGGGAATCGCCGAGAATGAAAATGTGACCGATAAGAATGGCTCCGGTGAAACTG 560
|||||||||||| || | | | | || || | || | |||||| ||||||||||
Sbjct 417 CTCCAGAGGGAAACGTC-A-A-T-AA--TG--A--GA-A----TGGCTCTGGTGAAACTG 461
Query 561 AGAGGGTGAATGATGCAAAAGAAAACATTGTTGCTGAGGAAACTCCAAATGCGGCTCCAG 620
|| |||||||||||||||||||||||| ||||| |||||||||||| |||| ||||||
Sbjct 462 GGAAGGTGAATGATGCAAAAGAAAACATGGTTGCAAAGGAAACTCCAAGTGCGACTCCAG 521
Query 621 TTCAAGAAGAGGGTGA--GT----CGATGAAGGAGAAAG-CTCTGGATTCTGTTGATGAT 673
||||||||| |||||| || || |||||||||||| ||| |||||| ||||| |||
Sbjct 522 TTCAAGAAGCGGGTGACCGTGAGTCGGTGAAGGAGAAAGGCTC-GGATTCAGTTGAAGAT 580
Query 674 A--AG-A-GTA-AG-G---AG----A--CTGACAAAGAAAAAGATACTGGCTCAATCGAA 718
| || | | | || | || | |||||||||||||||| |||||||||||||||
Sbjct 581 AGTAGTAAGGAGAGAGTGGAGTCTCAGACTGACAAAGAAAAAGAGACTGGCTCAATCGAA 640
Query 719 AAGAACTCGGTAGATGTAGAGAAGAAGACCGTTGAAGCTAGTGATGAGAAGAAGAATTCT 778
||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 641 AAGAACTCGGTAGATACAGAGAAGAAGACCGTTGAAGCTAGTGATGAGCAGAAGAATTCT 700
Query 779 GAAGCTGAGACCAGAAACCATGAAGAAAATGGTCTGACCACAGAAGCTGAGGGGAAAGAG 838
||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 701 GAAGCTGCGACCAGAAACCATGAGGAAAATGGTCTGACAACAGAAGCTGAGGGGAAAGAG 760
Query 839 AAAACAGCAGAAGGAGAAGCTACCGGATAGCCCTGTTCTGCT-CTG 883
||||| ||||||| ||||||||||| ||||||||| |||||| |||
Sbjct 761 AAAACCGCAGAAGCAGAAGCTACCGAATAGCCCTGCTCTGCTTCTG 806
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44108214969
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5