BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G15800.1
Length=1200
Score E
Sequences producing significant alignments: (Bits) Value
Ahg318360 jgi|Araly1|318360|fgenesh1_pm.C_scaffold_3001376 1796 0.0
> Ahg318360 jgi|Araly1|318360|fgenesh1_pm.C_scaffold_3001376
Length=1200
Score = 1796 bits (972), Expect = 0.0
Identities = 1127/1203 (94%), Gaps = 6/1203 (0%)
Strand=Plus/Plus
Query 1 ATGGGTTATTGTG-T--TCCTCTTCGAAAGTCTCCAACTTCACATATGGttttctcttct 57
||||||||||||| | ||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 1 ATGGGTTATTGTGTTCCTCCTCTTGGAAAGTCTCCAACTTCACATATGGGTTTCTCTTCT 60
Query 58 ttcttcctttcgtttctcttagtcttctctatactctcttcACAAACGGCCGTAGCATTC 117
|||||||| ||||||||||| ||||||||| | |||||||||||||||||||||||||||
Sbjct 61 TTCTTCCTCTCGTTTCTCTTCGTCTTCTCTGTCCTCTCTTCACAAACGGCCGTAGCATTC 120
Query 118 ATCGGAACATATGGTGTAAACTACGGTCGCATAGCGGATAATCTTCCGTCTCCTGACGCG 177
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 121 ATCGGAACATACGGTGTAAACTACGGTCGCATAGCGGACAATCTTCCGTCTCCTGACGCG 180
Query 178 GTAGCAACTCTCCTTAAATCAGCAAAGATTAGAAACACCCGTATCTACGATGCTGACCAC 237
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 181 GTAGCAACTCTCCTTAAATCAGCAAAGATTAGAAACACCCGTATCTACGACGCTGACCAC 240
Query 238 TCTGTACTCACGGCGTTCCGCGGGACCGGGATTGAAATCATCGTTGGCTTAGGCAACGAG 297
|| |||||| ||||||||||||||| ||||| ||||||||||||||||||||||| |||
Sbjct 241 TCCGTACTCTTGGCGTTCCGCGGGACAGGGATAGAAATCATCGTTGGCTTAGGCAATGAG 300
Query 298 TTTCTCAAAGACATTAGTGTAGGAGAAGACCGAGCCATGAACTGGATTAAAGAAAACGTC 357
||||| || |||||||| || |||||||||||||||||||||||| |||| ||||||||
Sbjct 301 TTTCTTAAGGACATTAGCGTTGGAGAAGACCGAGCCATGAACTGGCTTAAGGAAAACGTG 360
Query 358 GAGCCTTTCATACGAGGCGGTACTAAAATTAGCGGTATCGCGGTGGGTAACGAGATTTTA 417
||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 361 GAGCCTTTCATACGAGGTGGTACTAGAATTAGCGGTATCGCGGTGGGGAACGAGATTTTA 420
Query 418 GGTGGCACCGATATCGGGCTTTGGGAAGCTCTCTTACCCGCAGCCAAGAACGTTTACTCC 477
||||| ||||||||||||||||||||||||||||| ||||| || ||||||||||||||
Sbjct 421 GGTGGAACCGATATCGGGCTTTGGGAAGCTCTCTTGCCCGCCGCTAAGAACGTTTACTCG 480
Query 478 GCTCTTCGCCGTCTCGGTCTTCACAATGTCGTCGAGGTGTCGAGTCCACATTCAGAGGCA 537
||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 481 GCTCTTCGCCGGCTCGGTCTTCACAATGTCGTCGAGGTGTCAAGCCCACATTCAGAGGCA 540
Query 538 GTGTTTGCGAACTCGTATCCACCGTCTTCGTGTACGTTCAGGGACGATGTGGCGCCGTTT 597
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 541 GTGTTTGCGAACTCGTATCCACCGTCGTCGTGTACGTTCAGGGACGATGTGGCGCCGTTT 600
Query 598 ATGAAGCCGTTGTTAGCGtttttttGGCAAATTCAGTCGCCGTTCTACATTAACGCCTAC 657
|||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||
Sbjct 601 ATGAAGCCGTTGTTAGCGTTTTTTGGGCAAATTGGGTCGGCGTTCTACATTAACGCCTAC 660
Query 658 CCTTTTCTTGCATATAAATCCGACCCGATTACAATTGACATCAATTACGCCCTTTTCGAG 717
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 661 CCTTTTCTAGCATATAAATCCGACCCGATCACAATTGACATCAATTACGCCCTTTTCGAG 720
Query 718 CACAACAAAGGCATCTTGGACCCTAAAACCAAGCTTCATTACGATAACATGTTCGACGCC 777
| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 721 CGCAACAAAGGCATCTTGGACCCCAAAACCAAGCTTCATTACGATAACATGTTCGACGCT 780
Query 778 ATGGTCGATGCTTCTTATGCTGCTCTCGAAAAAGCTGGCTACACAAAAGTCCCGGTGATT 837
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 781 ATGGTCGATGCTTCTTATTTTGCTCTCGAAAAAGCTGGCTACACAAAAGTCCCGGTGATT 840
Query 838 GTTTCGGAGACGGGATGGGCATCAAAAGGCGATGCAGACGAGCCTGGAGCGTCGGTAAAG 897
||||||||||||||||||||||||||||| ||||||||||| || |||||||| | |||
Sbjct 841 GTTTCGGAGACGGGATGGGCATCAAAAGGTGATGCAGACGAACCAGGAGCGTCATTGAAG 900
Query 898 AACGCGAGAACATATAATCGGAATCTTAGGAAGCGGCTGCAGAAGAGGAAAGGAACACCG 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 AACGCGAGAACATATAATCGGAATCTTAGGAAGCGGCTGCAGAAGAGGAAAGGAACACCG 960
Query 958 TACAGACCAGACATGGTGGTGAGAGCTTACGTGTTTGCTCTTTTCAACGAGAACTCGAAA 1017
|| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 961 TATAGACCAGACATGGTGGTGAGAGCTTACGTGTTTGCTCTCTTCAACGAGAATTCGAAA 1020
Query 1018 CCAGGTCCCACTTCCGAGAGAAACTTTGGCCTTTTTAAACCCGATGGTACTATTGCCTAC 1077
|||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1021 CCAGGTCCAACTTCCGAGAGAAACTTTGGCCTTTTTAAACCCGACGGAACTATTGCCTAC 1080
Query 1078 GATATTGGCTTAACCGGACTCAAGTCCTCTTCTGCCACACGGTATCGTTTTAAGTCGTCT 1137
|| |||||||| ||||||| |||||| |||||||||||||||| |||||||| | |||||
Sbjct 1081 GACATTGGCTTCACCGGACACAAGTCTTCTTCTGCCACACGGTGTCGTTTTAGGCCGTCT 1140
Query 1138 CTTGTTTCCGCTTCTGCTTTCACGTGTCTTCTTCTTCTTTTTCACCGGTTGTTCCACTTG 1197
|||||||| ||||||| |||||||| || | || ||||| ||||||| ||||| ||||||
Sbjct 1141 CTTGTTTCGGCTTCTGTTTTCACGT-TCCT-TT-TTCTTCTTCACCGTTTGTTACACTTG 1197
Query 1198 TGA 1200
|||
Sbjct 1198 TGA 1200
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44794427475
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5