BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G15810.1 Length=1005 Score E Sequences producing significant alignments: (Bits) Value Ahg929393 jgi|Araly1|929393|scaffold_301850.1 1295 0.0 > Ahg929393 jgi|Araly1|929393|scaffold_301850.1 Length=820 Score = 1295 bits (701), Expect = 0.0 Identities = 791/832 (95%), Gaps = 15/832 (2%) Strand=Plus/Plus Query 93 aagaaaataaaaa-taaaaatGGAATTAGTTGAAGAGACCATTCCAAAAGAAGGGAAAAA 151 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2 AAGAAAATAAAAAGAAAAAATGGAATTAGTTGAAGAGACCATTCCAAAAGAAGGGAAAAA 61 Query 152 GATGGGAGAAAGAATTGTGGTCGACAAAGCTTATCTTTACCAAGAAGACAAACCACTCAC 211 ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| Sbjct 62 GATGGGAGAAAGAATTGTGGTGGACAAAGCTTATCTCTACCAAGAAGACAAACCACTCAC 121 Query 212 CGTCTGCAAGACTTCTCTCTTCTACACCGGCGATGGCTTCGCCGCCTATGACTGCCGTGG 271 |||||||||||||||||||||||||||||||||||| |||||||||||||| ||| || Sbjct 122 CGTCTGCAAGACTTCTCTCTTCTACACCGGCGATGGTTTCGCCGCCTATGATTGCAACGG 181 Query 272 TGATATCATCTTCAGGGTTGATTCTTATGGACCTGACACAAGAGATAACGATGAGATTGT 331 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 182 TGATATCATCTTCAGGGTTGATTCTTATGGACCTGACACAAGAGATAACGATGAGATTGT 241 Query 332 CCTCATGGACGCGACCGGGAAGTGTCTCCTTACCGTTAAACGAAAGAGACCAACTCTACA 391 |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 242 CCTCATGGACGCTACCGGAAAGTGTCTCCTTACCGTTAAACGAAAGAGACCAACTCTACA 301 Query 392 CCAAAGATGGGAAGGTTTTCTCGGCGAGAGATCGGAAGGTCAGAAACCGATATTCAGCGT 451 ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 302 CCAAAGATGGGAAGGTTTTCTCGGCGAGAGATCGGAAGGTCAGAAACCGGTCTTCAGCGT 361 Query 452 CCGTAGATCGTCGATAATCGGACGGTGTACGATGGAAGTAGAAGTTTACGACGGAACAGG 511 || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 362 TCGGAGATCTTCGATAATCGGACGGTGTACGATGGAAGTAGAAGTTTACGACGGAACAGG 421 Query 512 AGAAGAGTACATTATCGATGGAGACTTCTCGCAACGAAGCTGTCTCATATACGACACGAA 571 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | Sbjct 422 AGAAGAGTACATTATTGATGGAGACTTCTCGCAACGAAGCTGTCTCATATACGACACGGA 481 Query 572 GAAATGTACTGTGGCTGAGATCAAACGCAAAGTAGACGCGTCAACGAACGTGATGCTTGG 631 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 482 TAAACGTACTGTGGCTGAGATCAAACGCAAAGTAGACGCGTCAACGAACGTGATGCTTGG 541 Query 632 TCGAGATGTGTTCACTCTAGAGATTAAACCGGGTTTTGATGGCGCTTTCGCGATGGGTTT 691 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 542 TCGAGATGTGTTCACTCTAGAGATTAAACCGGGTTTTGATGGCGCTTTCGCTATGGGTTT 601 Query 692 GGTCGTTGTGCTTGACCAGATCAACGGTGATGATCCAGTTGAGATTGGTGATGAACAGGT 751 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 602 GGTCGTTGTGCTTGACCAGATCAACGGTGATGATCCGGTTGAGATTGGTGATGAACAGGT 661 Query 752 ACACCCTTTTGTAGAGGATTAGTGTCGGtctctctctcacctctctcAGCGGTCTTCACG 811 ||||||||||||||||||||| | | || | | ||||||| || |||||||||| Sbjct 662 ACACCCTTTTGTAGAGGATTAAT--C--TC-C-C----ACCTCTCACAATGGTCTTCACG 711 Query 812 TTAACATATCGAATCTAATCTTTAGTTTTTCAATCTTTGGATTTGGACCATATGGGATTA 871 |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 712 TTAACATATCGAATCTAATCTTTAGTTTTTCAATCTTTGGATTTGGACCATATG--ATTA 769 Query 872 TGG-AGATCTGTTTGTATCATTCTGTGTTAAGTCATTTAAGTTGCTACGTTA 922 ||| || |||||||||||||||||||||||| |||||||||||||||||||| Sbjct 770 TGGGAG-TCTGTTTGTATCATTCTGTGTTAAATCATTTAAGTTGCTACGTTA 820 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37360458660 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5