BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G15840.1 Length=1033 Score E Sequences producing significant alignments: (Bits) Value Ahg929397 jgi|Araly1|929397|scaffold_301854.1 1358 0.0 > Ahg929397 jgi|Araly1|929397|scaffold_301854.1 Length=880 Score = 1358 bits (735), Expect = 0.0 Identities = 832/879 (95%), Gaps = 6/879 (1%) Strand=Plus/Plus Query 63 TTCTCATTAGATCGGTAT-CGATGGCTGCTGCCGCTAATACCTCCGCCGTTTTCGCCTCT 121 ||||||| ||| |||| | | ||||||||||||||||||||| ||||| ||||||||||| Sbjct 2 TTCTCATCAGAACGGT-TCCCATGGCTGCTGCCGCTAATACCGCCGCCATTTTCGCCTCT 60 Query 122 CCGTCGCAGCCTTTATCCTCGAAACGTAGTTTTTTGTACAGTTCAAGGATTGGTCCAATA 181 || ||||||||||||||||| ||||| ||||||||||| ||||||| ||||||||||||| Sbjct 61 CCTTCGCAGCCTTTATCCTCTAAACGGAGTTTTTTGTATAGTTCAACGATTGGTCCAATA 120 Query 182 CTAAGGAGATTTCCGAGGAAGAAACTTGATCTCCAAGTTAAAGCTGTTGCCACGACTCTT 241 || ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 121 CTTAGGAGATTTCCAAGGAAGAAACTTGTTCTCCAAGTTAAAGCTGTTGCCACGACTCTT 180 Query 242 GCACCTCTCGAAGAGATCAAAGAATACAAGCTTCCTTCATGGGCCATGTTCGAGATGGGT 301 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 181 GCACCTCTCGAAGAGATCAAAGAATATAAGCTTCCTTCATGGGCCATGTTCGAGATGGGT 240 Query 302 ACTGCTCCTGTGTACTGGAAAACCATGAATGGTCTTCCACCAACCT-CAGGTGAAAAGTT 360 |||||||||||||||||||||||||||||||||||||| |||| || ||||||| ||||| Sbjct 241 ACTGCTCCTGTGTACTGGAAAACCATGAATGGTCTTCCTCCAA-CTGCAGGTGAGAAGTT 299 Query 361 GAAACTTTTCTATAATCCAGCTGCAAGCAAACTCACTCTTAACGAAGACTATGGGGTTGC 420 |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| Sbjct 300 GAAACTTTTCTATAATCCAGCTGCAAGCAAACTCACACTTAACGAGGACTATGGGGTTGC 359 Query 421 TTTCAACGGAGGATTTAACCAACCAATCATGTGTGGTGGGGAGCCAAGAGCAATGCTTAA 480 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 ATTCAACGGAGGATTTAACCAACCAATCATGTGTGGTGGGGAGCCAAGAGCAATGCTTAA 419 Query 481 GAAAGATCGAGGCAAAGCCGATTCTCCGATATACACTATGCAGATTTGCATTCCTAAGCA 540 ||| ||||||||||||||||||||||| || ||||| ||||||||||||||||| ||||| Sbjct 420 GAAGGATCGAGGCAAAGCCGATTCTCCAATTTACACCATGCAGATTTGCATTCCAAAGCA 479 Query 541 TGCTGTGAATTTGATATTCTCATTCACTAATGGTGTCGATTGGGACGGTCCATACAGACT 600 ||||||||||||||||||||| ||||| || ||| | || ||||| |||||||||||||| Sbjct 480 TGCTGTGAATTTGATATTCTCGTTCACCAACGGTATTGACTGGGATGGTCCATACAGACT 539 Query 601 TCAGTTTCAAGTCCCCAAGCGATGGCAAAACAAACCTATTGAGTTCTTCAATGAGGGTCT 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 TCAGTTTCAAGTCCCCAAGCGATGGCAAAACAAACCTATTGAGTTCTTCAATGAGGGTCT 599 Query 661 AGCGAACGAGTTGAGCCAAGATGGAGCCTGCGAAAGAGCAATATTTCCTGACTCGAACGT 720 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 600 AGCGAATGAGTTGAGCCAAGATGGAGCCTGCGAAAGAGCAATATTTCCTGACTCGAACGT 659 Query 721 TGTTCCAACTCGTTGCACGATGATCGCCAACTTGACGGTCGAAGGAGGAGATAGATGCAA 780 |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 660 TGTTGCAACTCGTTGCACAATGATCGCCAACTTGACGGTCGAAGGAGGAGATAGATGCAA 719 Query 781 CTTGGATCTAGTTCCTGGATGCATGGATACAAATTCAGAACATTTCAACCCATATGCTAA 840 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 720 TTTGGATCTAGTTCCTGGGTGCATGGATACAAATTCAGAACATTTCAACCCATATGCTAA 779 Query 841 TGTTGATGATGGCTCTTGTCCCCTCGAGTTATCCGATTCTGATGAATAGAACTA-ATTTT 899 ||||||||||||||||||||| ||||| |||||||||||||||||||||| ||| ||||| Sbjct 780 TGTTGATGATGGCTCTTGTCCACTCGATTTATCCGATTCTGATGAATAGAGCTAGATTTT 839 Query 900 TATTTATGTAAATATATATACACATATGTTAATATCAGT 938 ||||||||||||||||| |||||| ||||||||||||| Sbjct 840 -ATTTATGTAAATATATAAACACATGTGTTAATATCAGT 877 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 38427900336 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5