BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G15850.1 Length=1381 Score E Sequences producing significant alignments: (Bits) Value Ahg479040 jgi|Araly1|479040|fgenesh2_kg.3__1741__AT3G15850.1 1958 0.0 > Ahg479040 jgi|Araly1|479040|fgenesh2_kg.3__1741__AT3G15850.1 Length=1314 Score = 1958 bits (1060), Expect = 0.0 Identities = 1267/1358 (93%), Gaps = 49/1358 (4%) Strand=Plus/Plus Query 27 TAAGGGTTTAAGCCTCTTCTCTTCCTTCTTTCTCTTAGCCATCACATCGATAATGGCTTC 86 |||||||||||| |||||||||| | ||||||||||||||||||||||||||||||| Sbjct 1 TAAGGGTTTAAGTCTCTTCTCTT--GGC-TTCTCTTAGCCATCACATCGATAATGGCTTC 57 Query 87 TCTTCTAACAAAACCCAAA-CCCGTTTTCCTCTGTTCACCATCGTTATCTCCAAGAACTT 145 |||| |||||||||||||| ||| ||||||||||||||||||||||||||||| |||||| Sbjct 58 TCTTTTAACAAAACCCAAAGCCC-TTTTCCTCTGTTCACCATCGTTATCTCCACGAACTT 116 Query 146 TGAACACAGCAACACCGTCATTGAATTTCACCAGAATTTCATTCACCCATCACCAAAAGC 205 |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 117 TGAACACATCAACACCGTCATTGAATTTCACCAGAATTTCATTCACCCACCACCAAAAGC 176 Query 206 TTGCTCCTTTCAAGCCTCCTAGTCTCGTTGTTGCATTCTCTGAAAAGGGTTTGAAGAGAG 265 ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| Sbjct 177 TTGCTCCTTTCAAGCCTCCAAGTCTCGTTGTTGCATTCTCTGAGAAGGGTTTGAAGAGAG 236 Query 266 ATGTCACCACAGCTGCTGCAGCGACGGAGGGAGATTACAGAAGGATAATGTTATCTGATG 325 ||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||| Sbjct 237 ATGTCACCACAGCTGCTGCTGCGACGGAGGGAGATTACAGAAGGATAATGCTATCGGATG 296 Query 326 TGTTGGTGAAGAAGAAGGAAAAAGTAGTTTGGTGGGAGAGAGAATGGAAAGCTATGGACT 385 |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| | Sbjct 297 TGTTGGTGAAGAAGAAGGAAAAAGTAGTTTGGTGGGAGAGGGAATGGAAAGCGATGGATT 356 Query 386 TTGGAGCTGTTGCTGTCGTTTTGTCTATGCATTTGCTTAGTCTTTTGGCTCCGTTTCAAT 445 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | Sbjct 357 TTGGAGCTGTTGCTGTGGTTTTGTCTATGCATTTGCTTAGTCTTTTGGCTCCGTTTCAGT 416 Query 446 TCAATTGGAGAGCTGTTTCGGTTGCTTTTGGGCTTTATATCGTTACAGGTCTTCTGGGGA 505 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | Sbjct 417 TCAATTGGAGAGCTGTTTCGGTTGCTTTTGGGCTTTATATCGTTACAGGTCTTTTGGGTA 476 Query 506 TTACTCTGTCTTTCCATAGGAATCTTTCTCATAAAGCCTTCAAGCTACCTAAATGGCTTG 565 |||||||||||||||||||||||||||||||||| || |||||||| || |||||||||| Sbjct 477 TTACTCTGTCTTTCCATAGGAATCTTTCTCATAAGGCTTTCAAGCTTCCCAAATGGCTTG 536 Query 566 AGTACTTGTTTGCTTATTGTGGAGCTCAAGCTCTTCAGGGAAACCCAATTGATTGGGTGA 625 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 537 AGTACTTGTTTGCTTATTGTGGAGCTCAAGCTCTTCAGGGAAACCCAATTGATTGGGTGA 596 Query 626 GTACACATAGGTACCATCATCAGTTTTGTGATTCAGACAGAGACCCTCATAGCCCACTTG 685 ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 597 GTACACATAGGTATCATCATCAGTTTTGTGATTCAGACAGAGACCCTCATAGTCCACTTG 656 Query 686 ATGGGTTTTGGTTCAGTCACATGAATTGGATGTTTGATACCAATACAATCACCCAAAGGT 745 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 657 ATGGGTTTTGGTTCAGTCATATGAATTGGATGTTTGATACCAATACAATCACCCAAAGGT 716 Query 746 GTGGAGAGCCTAATAATGTTGGGGACTTGGAGAAGCAGCCATTCTATCGATTCCTTCGAA 805 ||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||| Sbjct 717 GTGGAGAGCCTAATAATGTTGGGGATTTGGAGAAGCAACCATTCTATCAATTCCTTCGAA 776 Query 806 CCACCTACATTTTGCATCCGCTGGCTCTAGCGGTTGCTTTATACGCAATGGGTGGCTTTC 865 |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| | Sbjct 777 CCACCTACATTTTGCATCCGGTGGCTCTAGCGGTTGCTCTATACGCAATGGGTGGCTTCC 836 Query 866 CATTCATCGTTTGGGGAATGGGTGTAAGAATAGTATGGGTATATCATATAACTTGGCTAG 925 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 837 CATTCATCGTTTGGGGAATGGGTGTAAGAATAGTATGGGTGTATCATATAACTTGGCTAG 896 Query 926 TGAACTCAGCTTGTCATGTATGGGGAAAACAAGCATGGAACACAGGCGATTTGTCTAAGA 985 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 897 TGAACTCAGCTTGTCATGTATGGGGAAAACAAGCATGGAACACAGGCGATTTGTCTAAGA 956 Query 986 ACAACTGGTGGGTAGCAGCTCTAGCATTCGGGGAAGGATGGCACAACAATCACCATGCTT 1045 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 957 ACAACTGGTGGGTAGCAGCTCTAGCATTCGGGGAAGGATGGCACAACAATCATCATGCTT 1016 Query 1046 TTGAGTTCTCAGCTCGACACGGCTTAGAATGGTGGCAACTTGATATGACTTGGTACGTCG 1105 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1017 TTGAGTTCTCAGCTCGACACGGTTTAGAATGGTGGCAACTTGATATGACTTGGTACGTCG 1076 Query 1106 TTAAGTTCCTTCAAGCCATCGGTTTAGCAACTGATGTCAAGCTCCCATCGGAAGCTCAGA 1165 ||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1077 TTAGGTTTCTTCAAGCCATCGGTTTAGCAACCGATGTCAAGCTCCCATCGGAAGCTCAGA 1136 Query 1166 AACAAAGAATGGCATTCACCAGCGACTGATCTTAAAAAACTACATGGTTATGCCTAAAGT 1225 |||||||||||||||| |||| | | || | | | | | | || || Sbjct 1137 AACAAAGAATGGCATTGACCA--G-C-GA-C-T----GA-T-C-----T-TG----AA-- 1172 Query 1226 CAAAACTGTCGGTTCGATTGAAGCTATGAAGGTTTTAAAAAAGGATTTTGTTCTGCTTTT 1285 |||||||||||| |||||||||||||||||||||| |||| | |||| Sbjct 1173 -AAAACTGTCGGTACGATTGAAGCTATGAAGGTTTT--AAAA--A-----------TTTT 1216 Query 1286 TTGTGTTTACTTAAAGGTATATATCTGTGCAAGAGATTGTATGTGACAAACTGATTATGA 1345 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1217 TTGTGTTTACATAAAGGTATATATCTGTGCAAGAGATTGTATGTGACAAACTGATTATGA 1276 Query 1346 AT---AA-TATCTATAATTACATTCAATACAAAAGGAA 1379 || || |||||||||||||||||||||||||||||| Sbjct 1277 ATTTTAAATATCTATAATTACATTCAATACAAAAGGAA 1314 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 51694675452 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5