BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G15900.1 Length=738 Score E Sequences producing significant alignments: (Bits) Value Ahg479046 jgi|Araly1|479046|fgenesh2_kg.3__1747__AT3G15900.1 933 0.0 > Ahg479046 jgi|Araly1|479046|fgenesh2_kg.3__1747__AT3G15900.1 Length=704 Score = 933 bits (505), Expect = 0.0 Identities = 629/685 (92%), Gaps = 23/685 (3%) Strand=Plus/Plus Query 9 TAGTTTGTTATGAAAGTGAGTGAAAACGCAAACGTGGGTTTGT-GGGGAGCGTTTGCGTT 67 |||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||| Sbjct 1 TAGTTTGTTATGAAAGTGAGTGAAAACGCAAACGTGGG-TTGTGGGGGAGCGCTTGCGTT 59 Query 68 CTAAAGTTTCAAGAATCGACGCAAAACGTGAGATGTGTTTTT-GGTAAGCGTCGTGTCTC 126 ||||| |||||||||||||||||||||||||||||||||||| |||| |||||||| Sbjct 60 CTAAACTTTCAAGAATCGACGCAAAACGTGAGATGTGTTTTTAGGTAGGCGTCGTG---- 115 Query 127 TCTCTCTTATCCTCTGTTCACGCCATTCACAAGCCTGTGTGACCAC---AAAATACGACA 183 || |||||||||||||||||||||||||| |||||||| || |||| |||| |||||| Sbjct 116 TCGCTCTTATCCTCTGTTCACGCCATTCATAAGCCTGTATGGCCACAAAAAAAAACGACA 175 Query 184 GAATTAGAGAG-AAA-AGATAGAGAG--ATGTCAGGTTCTGTCTTCGTTCCCGGTATGGC 239 || |||||||| ||| ||| |||||| |||||||||||||| ||||||||||||||||| Sbjct 176 GATTTAGAGAGAAAAGAGAGAGAGAGATATGTCAGGTTCTGTTTTCGTTCCCGGTATGGC 235 Query 240 GATTGGAGTTCCCACGCTTTCTCGTTCGAGCTCTGTTCACCGGAGCTTAGAACCGACGAA 299 |||||||||||| |||||||||||||||||||||| |||||||||||| ||||| ||||| Sbjct 236 GATTGGAGTTCCGACGCTTTCTCGTTCGAGCTCTGCTCACCGGAGCTTGGAACCCACGAA 295 Query 300 GAAGATGACTATGAGTAGTGTCAAATTCGTGACCAGTTTTCGAAACCCGTCAAACTGTTC 359 ||||||||| |||| || ||||||||||||||||| ||||||||| ||||||| |||||| Sbjct 296 GAAGATGACAATGACTAATGTCAAATTCGTGACCATTTTTCGAAATCCGTCAAGCTGTTC 355 Query 360 AGGGACAAAACGGTCATTTCGCGTTA-TGGCTTCCGATGACCGGTCGGAACAAGCAGATA 418 |||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||| Sbjct 356 AGGGACAAAACGGTCATTTCGCGTTACT-GCTTCCAATGACCGGTCGGAACAAGCAGATA 414 Query 419 ACGGTCAAGGAATTCAGGAGGACTTAAACTACTTGTTGAAGATCGGAGTTGGTTCAGTGG 478 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 415 ACGGTCAAGGAGTTCAGGAGGACTTAAACTACTTGTTGAAGATCGGAGTTGGTTCAGTGA 474 Query 479 CAGGTGCAGCTATAATCAAATACGGAAGTGTCTTGTTCCCACAGATCACAAGACCTAATC 538 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 475 CAGGCGCAGCTATAATCAAATACGGAAGTGTCTTGTTCCCACAGATCACAAGACCTAATC 534 Query 539 TCACTCTAGCCCTCTTCATTATCATAGCTCCTGTTGTAATCTCCGTTATCCTTTTGTCCC 598 ||||||| ||||||||||||||||| ||||||||||||||||| ||| ||||||||| || Sbjct 535 TCACTCTGGCCCTCTTCATTATCATCGCTCCTGTTGTAATCTCTGTTCTCCTTTTGTTCC 594 Query 599 TATCATCATCATCTTCCTCCAAGAAACAGAACTGATTGGT--TaaaaaaaTGTGTAAATG 656 ||||||||||||| | ||||||||||| ||||||||||| |||||||| ||||||||| Sbjct 595 TATCATCATCATC--C-TCCAAGAAACACAACTGATTGGTAATAAAAAAA-GTGTAAATG 650 Query 657 TATTTCACCTCATTGTGAAAAAGAT 681 || |||| ||||||||||||| ||| Sbjct 651 TAATTCAGCTCATTGTGAAAA-GAT 674 Score = 56.5 bits (30), Expect = 3e-07 Identities = 32/33 (97%), Gaps = 0/33 (0%) Strand=Plus/Plus Query 692 GATGAGAAAGTTTCAGTATAATCCAGAATAAAA 724 ||||||||||||||||||||||||||||| ||| Sbjct 672 GATGAGAAAGTTTCAGTATAATCCAGAATTAAA 704 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27181639821 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5