BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G15920.1 Length=2494 Score E Sequences producing significant alignments: (Bits) Value Ahg479047 jgi|Araly1|479047|fgenesh2_kg.3__1748__AT3G15920.1 3655 0.0 > Ahg479047 jgi|Araly1|479047|fgenesh2_kg.3__1748__AT3G15920.1 Length=2382 Score = 3655 bits (1979), Expect = 0.0 Identities = 2258/2391 (94%), Gaps = 26/2391 (1%) Strand=Plus/Plus Query 13 gatcgagaaaggagaagaag--gaatcaagagagtagaaaggaaATGAATCTATACGCGC 70 |||||||| ||||||||||| ||||||||||||| ||||||||||||||| ||||||| Sbjct 1 GATCGAGAGAGGAGAAGAAGAATAATCAAGAGAGTAAAAAGGAAATGAATCTCTACGCGC 60 Query 71 ACGATCTTTCTCTTCTCGATTTCAATTACAACGTCTCCGGTCCCTTCGGCGAGCCACTAT 130 |||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||| Sbjct 61 ACGATCTTTCTCTTCTTGATTTCAATTACAACGTCTCCGGTCCCTTCGGCGAGTCGCTAT 120 Query 131 CTCACCGCTTCCTCTCTCCTGGCCCTTTCTTCCAAGGCGAAGAAGACGATTACCGCCG-T 189 |||||||||||||||| |||||||||||||||||||| || || |||||||| ||||| | Sbjct 121 CTCACCGCTTCCTCTCGCCTGGCCCTTTCTTCCAAGGTGAGGACGACGATTATCGCCGTT 180 Query 190 A-A-TACGAGCTACAGTCACGACGGAGCTAATGGACGAGAACCGGACA-CAGATTCAAGA 246 | | || ||||||||||||||||||||||||||||||||| | || | || |||||||| Sbjct 181 ATACCACCAGCTACAGTCACGACGGAGCTAATGGACGAGAAGCAGATACCA-ATTCAAGA 239 Query 247 GCATCTCCGCCGCATCGCCACGACGGGAGGTCTCCGTTACCTCTGGGAATGGATTGGAGT 306 | |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| Sbjct 240 GTATCTCCGCCGCATCGCCACGACGGAAGGTCTCCGTTACCTCTGGGGATGGATTGGAGT 299 Query 307 TCTCCTCCTCGTCATTTGGAAGGAAGGGACACGGTTTGGCCACATGA-TCATCGAACTGG 365 ||||||||||||| ||||||||| || |||||||||||||||| || || ||||||||| Sbjct 300 GCTCCTCCTCGTCACTTGGAAGGACGGAACACGGTTTGGCCACACGATTC-TCGAACTGG 358 Query 366 TTGGAGTTACTGTGTCACTGTCCCTTCTTGGGTTGACCTTCCCAAGTCAAGCGTTTCAGA 425 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 359 TTGGAGTTACTGTGTCACTGTCCCCTCTTGGGTTGACCTTCCCAAGTCAAGCGTTTCAGA 418 Query 426 TCCTGCCGTGTTTTATAGAGTGCAAGTAGCGATACAATCTCCTGAGGGAATCACTTCTGC 485 ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 419 TCCCGCCGTGTTTTATAGAGTGCAAGTGGCGATACAATCTCCTGAGGGAATCACTTCTGC 478 Query 486 TAGGCTGGTACTTAGGAGGTTCAATGATTTCTTGGAGTTATATTCGTCTATTAAAAAGGA 545 |||| || ||||||| || || ||||||||||||||||||||||||||||||| |||||| Sbjct 479 TAGGATGATACTTAGAAGATTTAATGATTTCTTGGAGTTATATTCGTCTATTAGAAAGGA 538 Query 546 GTTTGTGAAGAAAAGCTTACCCCAGGCACCACCAAAGAAGATTCTGAGGATGAGAAACCA 605 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 539 GTTTGTGAAGAAAAGCTTACCCCAGGCACCACCAAAGAAGATTTTGAGGATGAGAAACCA 598 Query 606 GACACTTTTGGAAGAGAGGAGGTGCTCTCTGGAAGATTGGATGAATAGACTTTTGTCAGA 665 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 599 GACACTTTTGGAAGAGAGGAGGTGTTCTCTGGAAGATTGGATGAATAGACTTTTGTCAGA 658 Query 666 TATTGATATATCCAGAAGCGCTCTTATAGCTACATTTCTTGAGCTTGAAGCTGCTGTCAG 725 |||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| Sbjct 659 TATTGATATATCTAGAAGCGCTCTGATAGCAACATTTCTTGAGCTTGAAGCTGCTGTCAG 718 Query 726 GTCTTATTTTAATGATGAATATCAAGAAACTGAAGATACCTCTGGGGACATTCCGTCACT 785 |||||||||||| |||||||||||||||||||||| |||||||||||| |||||| |||| Sbjct 719 GTCTTATTTTAACGATGAATATCAAGAAACTGAAGGTACCTCTGGGGATATTCCGCCACT 778 Query 786 TCTACCTACCACCA-TCTCTGATGTCCCTGGTAGTTCATCAGTTACCATAGATCATGA-C 843 |||||||||||||| | |||||||| ||||||||||||||||||||| |||||||| | | Sbjct 779 TCTACCTACCACCAGT-TCTGATGTTCCTGGTAGTTCATCAGTTACCGTAGATCAT-ACC 836 Query 844 AATGATTCTGCTGATGAGACATCTAATGCCTCAACAATGAAGCATGACGAAGCTAATCTC 903 |||||||||||||||||||||||| ||||||||||| ||||||||||||| |||| |||| Sbjct 837 AATGATTCTGCTGATGAGACATCTGATGCCTCAACAGTGAAGCATGACGATGCTAGTCTC 896 Query 904 AAAAATCTTTTCTCAAGGAATTCAACTGCTGTAGATAATGTGACTGATTGGCATGAGTTG 963 ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 897 AAAAATCTTGTCTCAAGGAATTCAACTTCTGTAGATAATGTGACTGATTGGCATGAGTTG 956 Query 964 ATCACAGAATATGGACTTCTAGATCAAAGTTCTTTTCAGGAAAAAGTTGAACGTCTTTCT 1023 ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 957 ATCTCAGAATATGGACTTCTAGATAAAAGTTCTTTTCAGGAAAAAGTTGAACGTCTTTCT 1016 Query 1024 AGTACTAATGGAGATGCAGCAACTGGTACCGTAACCAGAGGGGGCATTTCTAGTGGAGTT 1083 ||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||| Sbjct 1017 AGTACTAATGGAGCTGCAGCAACTGGTACCGTAACCGGAGAGGGCATTTCTAGTGGAGTT 1076 Query 1084 GGAATTCAGAGGTTGGATGGAAGTGATAGAAAGTTTCAAGAACTGACCATTGAAAGCATT 1143 || ||||||||||||||||||||||||||||||||||||||| || || ||||||| Sbjct 1077 GGGATTCAGAGGTTGGATGGAAGTGATAGAAAGTTTCAAGAAAAGATCACTGAAAGC--- 1133 Query 1144 aaaaaaaCTCATGTAAGCGATTTTGAGGCGTCAACTGCTGTGGAACCTGATTTAGTTAAC 1203 || ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| Sbjct 1134 AATAAAACTCATGTAAGCGATTTTGAGGCGTCAACTCCTGGGGAACCTGATTTAGTTAAC 1193 Query 1204 CAAGGCGCTATGGATATTCATGGTGAAGCCCATGGAAACATGTATGGTGCAGTAGGTGGA 1263 |||||| | |||||||||||||||||||| |||||||||||||||||||| || |||||| Sbjct 1194 CAAGGCTCGATGGATATTCATGGTGAAGCTCATGGAAACATGTATGGTGCGGTTGGTGGA 1253 Query 1264 GATACTGAGACTCAGAAGGATCTTGCTATTGTATTTCAGTCTGAGGAGCGACATAAATTA 1323 ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||| Sbjct 1254 GATACTGAGACTCAGAAGGATCTGGCTATTGTATTTCAGTCTGAGGAGAGACATAAGTTA 1313 Query 1324 AAGAGGGTTATTGATACATTAAAGCAGAGACTGGAAACAGCAAAAGCTGACACGGAAGAT 1383 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1314 AAGAGGGTTATTGATACGTTAAAGCAGAGACTGGAAACAGCAAAAGCTGACACGGAAGAT 1373 Query 1384 CTTATCTCAAGGCTGAATCAGGAGTTAGCCGTTCGACAATTTCTGTCAACAAAGGTAAGA 1443 ||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||| Sbjct 1374 CTTATCTCAAGGCTGAATCAGGAGTTAGCTGTTCGACAGTTTTTGTCAACAAAGGTAAGA 1433 Query 1444 GATTTAGAGGTTGAACTTGAAACAACTCGAGAGAGCTGCAAGCAAGGCATGGAGAAAACA 1503 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1434 GATTTAGAGGTTGAACTTGAAACAACTCGAGAGAGCTGCAAGCAAGGCATGGAGAAAACA 1493 Query 1504 GTCCTAGATGAAAAGGAAAGATTTACTCAAATTCAGTGGGATATGGAGGAACTCCGCAAG 1563 || || |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1494 GTTCTTGATGAAAAGGAAAGATTTACTCAAATTCAGTGGGATATGGAGGAACTCCGCAAG 1553 Query 1564 CAATGCATGGAAATGGAATCGTTTTTAAACTCTATAAAGGACGAGAAAACACATATTGAG 1623 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1554 CAATGCATGGAAATGGAATCGTTGTTAAACTCTATAAAGGACGAGAAAACACATATTGAG 1613 Query 1624 ACTGCAAATGAGTCACTTGTTCAAGAAAATCAGATGTTGCTGCAGCAGATCAATGATATA 1683 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1614 ACTGCAAATGAGTCACTTGTTCAAGAAAATCAGATGTTGCTGCAGCAGATCAATGATATA 1673 Query 1684 AGAGAAAATTTTGAGAATTTTCATAAAGAACACGAAGAGCTGGAAGTGAAAGCGAAAGCA 1743 ||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||| Sbjct 1674 CGAGAAAATTTTGAGAATTTTCATAAAGAACATGAAGAGCTGGAAGTAAAATCGAAAGCA 1733 Query 1744 GAGCTGAAAGTCCTCGTTAAAGAGGTCAAGTCTCTCCGAACCACTCAATCAGATTTGAGA 1803 ||||||||||| ||||| ||||| ||||||||||||||||||||||||||||| |||||| Sbjct 1734 GAGCTGAAAGTTCTCGTCAAAGAAGTCAAGTCTCTCCGAACCACTCAATCAGAATTGAGA 1793 Query 1804 CAAGAGCTTAG-CGGCATAATGAAAGAAAAACTGGAGATGGAGAGAATTGTTCAACGGGA 1862 ||||||||||| || || ||||||||||||||||||||||||||||||||||||||| || Sbjct 1794 CAAGAGCTTAGTCG-CACAATGAAAGAAAAACTGGAGATGGAGAGAATTGTTCAACGCGA 1852 Query 1863 GAAGGATAGAGAAGAAACTGCAAAAAACGCAGACAAGAAGTTGCTGCATGAGTGTGATGT 1922 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1853 GAAGGATAGAGAAGAAACTGCAAAAAACGCAGACAAGAAGTTGCTGCATGAGTGTGATGT 1912 Query 1923 TCTACAAAACCGGCTTCAAGAATGCAATGTCAAGTTCGACATTGAAGAGGAGGGTAAATT 1982 ||||||||| ||||||||||| ||||||||||||||| |||||||||||||| ||||||| Sbjct 1913 TCTACAAAATCGGCTTCAAGAGTGCAATGTCAAGTTCCACATTGAAGAGGAGTGTAAATT 1972 Query 1983 AATAATGGACTCATCATCTCTATCCGAAGCCATCGAGCTACTAGCAACATCCGATAACCG 2042 ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| Sbjct 1973 AATAATGGACTCATCATCTCTCTCTGAAGCCATCGAGCTACTAGCAACATCCGATAACCG 2032 Query 2043 AATAGGTCTTCTAATTGCTGAGACGCAGCTTCTCTCAGAGGAAGTGGAAAAGCTGAAGCT 2102 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2033 AATAGGTCTTCTAATTGCTGAGACGCAGCTTCTCTCAGAGGAAGTGGAAAAGCTGAAGCT 2092 Query 2103 AACATCAGGAGGGCATCGTGGAACAGACGATCTAGTAAGGAAGATGCTGACAGAGGTTCT 2162 | ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| Sbjct 2093 ATCATCAGGAGGGCATCGTGGAACAGACGATGTAGTGAGGAAGATGCTGACAGAGGTTCT 2152 Query 2163 GATTGATAATGCCAGATTAAGGAAGCAGGTTAACTCTGTTCTTCGTTGCTCTTTGTCCGG 2222 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2153 GATTGATAATGCCAGATTAAGGAAGCAGGTTAACTCTGTTCTTCGTTGCTCTTTGTCCGG 2212 Query 2223 ACATGGAATATCAGTCAGAGAAGCCGGAACAGAAGTAGA--T-GACGA--A-GAAGGAAG 2276 ||||||| ||||||||||||||||||||||||||| ||| | || || | |||||||| Sbjct 2213 ACATGGAGTATCAGTCAGAGAAGCCGGAACAGAAGAAGAAGTAGAAGAGCAAGAAGGAAG 2272 Query 2277 TATTGATCTAGCAAGAACTGTTATGAGCAAGATCCTTGAGAAATGATTTGATCAGGTTTT 2336 ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 2273 TATTGATCTAGCAAGAACTGTTATGAGCAAGATCCTTGAGAAATGATTTTACCAGGTTTT 2332 Query 2337 TCGTGAAACTAAGCTAATCT-CAAATGGTTTTATCTTTCTGAAAATACTGT 2386 | ||||||||| |||||| | ||||||||||||||||| | |||||||||| Sbjct 2333 TAGTGAAACTATGCTAAT-TACAAATGGTTTTATCTTTTTAAAAATACTGT 2382 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 94006724660 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5