BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G16030.1
Length=2553
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479059 jgi|Araly1|479059|fgenesh2_kg.3__1760__AT3G16030.1 1482 0.0
Ahg908303 jgi|Araly1|908303|Al_scaffold_0002_1384 1363 0.0
Ahg887311 jgi|Araly1|887311|Al_scaffold_0810_1 1005 0.0
> Ahg479059 jgi|Araly1|479059|fgenesh2_kg.3__1760__AT3G16030.1
Length=2304
Score = 1482 bits (802), Expect = 0.0
Identities = 918/975 (94%), Gaps = 4/975 (0%)
Strand=Plus/Plus
Query 1581 CTCTGATGCAAACAAGCTCGGTGAAGGAGGTTTTGGTCCTGTATATAAGGGGAGGCTAAT 1640
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1332 CTCTGATGCAAACAAGCTCGGTGAAGGAGGTTTTGGTCCTGTATATAAGGGGAGTTTAAT 1391
Query 1641 AGATGGGGAGGAAGTGGCTATCAAAAGGCTATCATTAGCATCCGGGCAAGGATTAGTGGA 1700
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1392 AGATGGGGAGGAAGTGGCTATCAAAAGACTATCATTAGCATCCGGGCAAGGATTAGTGGA 1451
Query 1701 GTTCAAGAACGAAGCTATGCTTATTGCAAAACTTCAACACACAAATCTTG-TCAAGTTGC 1759
|||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||
Sbjct 1452 GTTCAAGAACGAAGCTATGCTTATTGCAAAACTTCAGCACACAAATCTTGTTC-AGTTGC 1510
Query 1760 TAGGATGCTGCGTCGAGAAGGATGAGAAAATGTTGATTTACGAATACATGCCCAACAAGA 1819
||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1511 TAGGATGCTGCATAGAGAAGGACGAGAAAATGTTGATTTACGAATACATGCCCAACAAGA 1570
Query 1820 GCCTTGACTACTTCCTCTTTGATCCCTTGAGGAAAATTGTTCTGGATTGGA-AGCTGCGG 1878
|||||||||||||||||||||||||||||||||||| ||| ||||||||| | ||||||
Sbjct 1571 GCCTTGACTACTTCCTCTTTGATCCCTTGAGGAAAAACGTTTTGGATTGGACA-CTGCGG 1629
Query 1879 TTTAGGATCATGGAAGGGATAATTCAAGGGCTTTTGTACCTTCATAAGTACTCGAGATTG 1938
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1630 TTCAGGATCATGGAAGGGATAATTCAAGGGCTTTTGTACCTTCACAAGTACTCGAGATTG 1689
Query 1939 AAAGTAATACACAGAGACATCAAAGCCGGCAACATTTTGCTGGACGAGGATATGAACCCC 1998
||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||| |||
Sbjct 1690 AAAGTGATACACAGAGACATCAAAGCCAGCAACATTTTACTGGACGAGGATATGAATCCC 1749
Query 1999 AAAATATCTGATTTTGGAATGGCTCGGATATTTGGAGCCCAAGAATCCAAAGCCAACACG 2058
|||||||| ||||||||||||||||||||||||||||| |||||||||| ||| |||||
Sbjct 1750 AAAATATCCGATTTTGGAATGGCTCGGATATTTGGAGCGCAAGAATCCAGAGCTAACACC 1809
Query 2059 AAAAGAGTTGCTGGCACATTTGGCTATATGTCTCCAGAGTACTTCAGAGAGGGATTATTC 2118
||||||||||||||||||||||| |||||||| || |||||||||||||| ||||| |||
Sbjct 1810 AAAAGAGTTGCTGGCACATTTGGATATATGTCCCCGGAGTACTTCAGAGAAGGATTGTTC 1869
Query 2119 TCGGCGAAATCAGATGTGTTCAGCTTCGGGGTTCTAATGCTCGAAATCATTTGTGGAAGG 2178
||||||||||||||||| || |||||||| ||||||||| | ||||||||||||||||||
Sbjct 1870 TCGGCGAAATCAGATGTATTTAGCTTCGGAGTTCTAATGTTGGAAATCATTTGTGGAAGG 1929
Query 2179 AAAAACAATAGCTTCCACCATGACTCAGAAGGACCTCTGAATCTCATAGTCCATGTGTGG 2238
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1930 AAGAACAATAGCTTCCACCATGACTCAGAAGGACCTCTGAATCTCATAGTTCATGTGTGG 1989
Query 2239 AATCTGTTTAAAGAGAACCGAGTTCGCGAGGTGATTGATCCATCTTTGGGAGATTCTGCA 2298
| ||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||
Sbjct 1990 AGTCTGTTTAAAGAGAACCGAGTTCACGAGGTGATAGATCCGTCTTTGGGAGATTCTGCA 2049
Query 2299 GTTGAGAACCCTCAAGTGTTGAGATGCGTTCAAGTTGCTCTGTTGTGTGTACAACAAAAC 2358
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 2050 GTTGAGAACCCTCAAGTGTTGAGATGTGTTCAAGTTGCTCTGTTATGTGTACAACAAAAC 2109
Query 2359 GCAGACGATAGACCAAGTATGTTAGACGTTGTGTCCATGATATACGGTGATGGAAACAAC 2418
||||| |||||||||||||||||||| |||||||| ||||||||||| || || ||||||
Sbjct 2110 GCAGAAGATAGACCAAGTATGTTAGAAGTTGTGTCGATGATATACGGCGACGGCAACAAC 2169
Query 2419 GCTCTTTCTTTGCCTAAAGAGCCAGCTTTCTATGATGGTCCCCCGAGAAGCTCGCCGGAG 2478
||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||
Sbjct 2170 GCTCTTTCTTTGCCTAACGAGCCAGCTTTCTATGATGGTCCTCGGAGAAGCTCGCCGGAG 2229
Query 2479 ATGGAAGTTGAGCCACCGGAGATGGAAAATGTATCGGCAAATAGAGTTACAATCACAGTG 2538
||||| ||||| ||||| ||| |||||||||||||||||||||||||||| |||||||||
Sbjct 2230 ATGGAGGTTGAACCACCTGAGCTGGAAAATGTATCGGCAAATAGAGTTACCATCACAGTG 2289
Query 2539 ATGGAAGCAAGATGA 2553
|||||||||||||||
Sbjct 2290 ATGGAAGCAAGATGA 2304
Score = 797 bits (431), Expect = 0.0
Identities = 537/588 (91%), Gaps = 8/588 (1%)
Strand=Plus/Plus
Query 217 GCTGTTTGGATTGCTAACCGTAACAATCCAGTTTTGGGACGCTCTGGAAGCCTCACAGTG 276
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 247 GCTGTTTGGATTGCTAACCGTAACAATCCAATTTTGGGTCGCTCTGGAAGCCTCACAGTG 306
Query 277 GACTCTCTTGGCCGATTGAGGATTTTAAGAGGAGCATCAAGCCTGCTTGAGCTAAGCTCT 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 307 GACTCTCTTGGCCGATTGAGGATTTTAAGAGGAGCATCAAGCCTGCTTGAGCTAAGCCCT 366
Query 337 ACGGAAACCACAGGAAACACAACCCTTAAGCTGTTGGATTCTGGAAATCTTCAGCTCCAA 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 367 ACGGAAACCACAGGAAACACAACCCTTAAGCTGTTGGATTCTGGAAATCTTCAGCTCCAA 426
Query 397 GAGATGGATTCTGATGGATCGATGAAGCGGACGT-TGTGGCAAAGTTTTGATTATCCAAC 455
||||||||||||||||||||||||| || || | |||||||||||||||||||||||||
Sbjct 427 GAGATGGATTCTGATGGATCGATGAGGCAGAT-TCTGTGGCAAAGTTTTGATTATCCAAC 485
Query 456 AGATACTCTTCTTCCGGGGATGAAACTGGGTTTCAATGTCAAGACCGGAAAGAGATGGGA 515
||||| |||||||| || |||||||| ||||||||||| |||| || |||||||||||
Sbjct 486 GGATACCCTTCTTCCTGGTATGAAACTTGGTTTCAATGTTAAGAATGGGAAGAGATGGGA 545
Query 516 ACTGACATCATGGCTAGGTGATACTTTACCCGCTTCTGGATCTTTTGTCTTTGGGATGGA 575
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 546 ACTGACATCATGGCTAGGTGATACTTTACCTGCTTCTGGATCTCTTGTCTTTGGGATGGA 605
Query 576 TGATAATATTACAAACCGGTTGACCATCTTGTGGCTTGGTAACGTGTATTGGGCAAGTGG 635
|| |||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||
Sbjct 606 TGCTAATATTACAAACCGGTTGACCATCTTGTGGCGTGGAAACATGTATTGGGCAAGTGG 665
Query 636 GCTCTGGTTTAAGGGTGGCTTTTCGTTGGA-GAAATTAAAC-ACGAACGGTTTCATCTTC 693
|||||||||||||||||| ||||| ||||| ||| ||||| || | |||||| ||||
Sbjct 666 GCTCTGGTTTAAGGGTGGATTTTCCTTGGATGAA-TTAAATGACTAT-GGTTTCCTCTTT 723
Query 694 TCCTTCGTTTCAACCGAAAGTGAACATTATTTTATGTATTCAGGTGATGAGAACTATGGT 753
|||||| |||||||||| |||||||| |||||||||||||||| |||| | || |||| |
Sbjct 724 TCCTTCATTTCAACCGAGAGTGAACACTATTTTATGTATTCAGATGATCACAAATATGCT 783
Query 754 GGACCATTATTTCCTAGG-ATAAGGATAGACCAACAAGGCAGTTTGCA 800
||| |||||||||| | |||| |||||||||||| || | ||||||
Sbjct 784 GGAACATTATTTCCC-GCTATAATGATAGACCAACAGGGAATTTTGCA 830
Score = 339 bits (183), Expect = 8e-92
Identities = 205/216 (95%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 1 ATGTGGTCAAATTGCATCTTTCTCACTCTTTTTACTTTTTATCTCTTCTTAGGACAATCA 60
|||||||||||| |||||||||||| | |||||||||| | |||||| ||||||||||||
Sbjct 1 ATGTGGTCAAATGGCATCTTTCTCATTTTTTTTACTTTGTCTCTCTTGTTAGGACAATCA 60
Query 61 TGCTGTCAAACAGATACCCTACTGCAGGGTCAGTACTTGAAAGATGGGCAAGAGCTCGTT 120
|| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TGTTGTGAAACAGATACGCTACTGCAGGGTCAGTACTTGAAAGATGGGCAAGAGCTCGTT 120
Query 121 TCAGCTTTCAATATCTTCAAACTCAAGTTTTTCAACTTCGAGAATTCAAGCAACTGGTAT 180
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 121 TCAGCTTTCAATATCTTCAAACTAAAGTTTTTCAACTTGGAGAATTCAAGCAACTGGTAT 180
Query 181 CTTGGAATTTGGTACAACAATTTTTATCTTAGTGGT 216
||||||||||||||||||||||||||||||||||||
Sbjct 181 CTTGGAATTTGGTACAACAATTTTTATCTTAGTGGT 216
Score = 89.8 bits (48), Expect = 9e-17
Identities = 52/54 (96%), Gaps = 0/54 (0%)
Strand=Plus/Plus
Query 1418 AGAGGCTTTCAACACTGAGAGTTGGTTCAACAATAGACCAAGAAATGCTACTAC 1471
|||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1274 AGAGGCTTCCAACACTGAGGGTTGGTTCAACAATAGACCAAGAAATGCTACTAC 1327
> Ahg908303 jgi|Araly1|908303|Al_scaffold_0002_1384
Length=2358
Score = 1363 bits (738), Expect = 0.0
Identities = 1244/1479 (84%), Gaps = 71/1479 (5%)
Strand=Plus/Plus
Query 1019 CTTTCAGAGAGACTGTATCCCCTTCCGC-AGAAAATGGATTTGTA-TTCAATGAGATTGG 1076
||||||||| ||| ||||| ||||| | || ||||| |||||| || ||||||| | |
Sbjct 899 CTTTCAGAGTGACAGTATCGTCTTCCTCAAG-CAATGGTTTTGTACTT-AATGAGACTAG 956
Query 1077 TAGAAGATTAAGCTCA-TATGATTGCTATGTTA-AGTGTCTCCAAAATTGTTCTTGTGTT 1134
| |||| || | | | | ||||||| ||| || | ||||| ||||| | |||||| ||
Sbjct 957 TGGAAGGTTTCGTTTAGT-TGATTGCAATGCTATA-TGTCTGCAAAACTCCTCTTGTCTT 1014
Query 1135 GCCTATGCTTCAACCAATG-GGGATGGTACGGGCTGCGAGATCTGGAATACAGATCCTAC 1193
||||||||||||||| | | |||||||||||| ||||| || |||||||| |||||||
Sbjct 1015 GCCTATGCTTCAACCGA-GCTGGATGGTACGGGTTGCGAAATTTGGAATACTTATCCTAC 1073
Query 1194 CAACGAAA-ATTCAGCTTCTCATCA-TCCCAGAACTATATATATTCG---T-ATTA-AAG 1246
|||| ||| ||| |||||||| | ||| ||||||||||| || || | |||| |
Sbjct 1074 CAAC-AAAGGGTCATCTTCTCAT-AGTCCTAGAACTATATACATCCGTAATGATTATTCG 1131
Query 1247 GT---TC------A-AAACTCGCGGCAACTTGGTTAGTTGTTGTGGCATCACTATTTCTA 1296
|| | | ||| | ||| ||||| | ||||| |||||||| | | |||
Sbjct 1132 GTAGGCCAAGAGAAGAAAAAGGTAGCAGCTTGGCAAATTGTTTTGGCATCAATGTGCCTA 1191
Query 1297 ATAATACCTGTGACTTGGTTGATCATCTATCTTGTTTTGAGGAAATTTAAAATAAAGGGT 1356
|| |||||| ||| |||||| || ||||||||||| ||| ||||||||||| |||| |||
Sbjct 1192 ATGATACCTATGATTTGGTTTATAATCTATCTTGTGTTGCGGAAATTTAAAGTAAAAGGT 1251
Query 1357 ACAAATTTTGTATCAGAATCACTCAAAATGATTTCTTCTCAATCATGTTCT-CTTACTAA 1415
| ||| || || || | | | ||||| | ||| | | || ||| |||
Sbjct 1252 AGAAA-ATT-TA--AG--T--GT----TTTATTTCGT-GGAAT-A--TACTACTTTCTAT 1295
Query 1416 CAAGAGGCTTTCA--ACACTGAGAG-TTGGTTCAACAATAGACCAAGAAATGCTACTACT 1472
||| | ||| ||| || | |||||||||||||||||||||||||||||||||
Sbjct 1296 GGAGA-GAAATCACTCCAC-AAG-GTTTGGTTCAACAATAGACCAAGAAATGCTACTACG 1352
Query 1473 TGAGTTGGGGATTGAAAGGAGACGCCGAGGCAAGAGAAGTGCAAGGAATAATAATAATGA 1532
||| ||||| ||||| |||||||||||| ||||||||||| |||||| | |||||| ||
Sbjct 1353 TGAATTGGGAATTGATAGGAGACGCCGACACAAGAGAAGTGAAAGGAAGAGTAATAACGA 1412
Query 1533 GCTTCAGATCTTTAGCTTTGAAAGTGTCGCT-TTTGCAACAGATTACTTCTCTGATGCAA 1591
||||||||| |||||||||||||| || | | || ||||||||| |||||||||||| ||
Sbjct 1413 GCTTCAGATTTTTAGCTTTGAAAGCGTAG-TGTTGGCAACAGATGACTTCTCTGATGAAA 1471
Query 1592 ACAAGCTCGGTGAAGGAGGTTTTGGTCCTGTATATAAGGGGAGGCTAATAGATGGGGAGG 1651
|||||||||||||||||||||||||||||||||||||||||| | || |||||||||| |
Sbjct 1472 ACAAGCTCGGTGAAGGAGGTTTTGGTCCTGTATATAAGGGGAAGTTATTAGATGGGGAAG 1531
Query 1652 AAGTGGCTATCAAAAGGCTATCATTAGCATCCGGGCAAGGATTAGTGGAGTTCAAGAACG 1711
||||||||||||| || ||||| || || || || ||||||||||||||||||||||| |
Sbjct 1532 AAGTGGCTATCAAGAGACTATCTTTGGCGTCTGGTCAAGGATTAGTGGAGTTCAAGAATG 1591
Query 1712 AAGCTATGCTTATTGCAAAACTTCAACACACAAATCTTG-TCAAGTTGCTAGGATGCTGC 1770
||||||||||||||||||||||||| || |||||||||| ||| ||| || ||||| |||
Sbjct 1592 AAGCTATGCTTATTGCAAAACTTCAGCATACAAATCTTGTTCAGGTT-CTTGGATGTTGC 1650
Query 1771 GTCGAGAAGGATGAGAAAATGTTGATTTACGAATACATGCCCAACAAGAGCCTTGACTAC 1830
|||||||| |||||||||||| ||||||| |||||||||| ||||||||| |||||||||
Sbjct 1651 GTCGAGAAAGATGAGAAAATGCTGATTTATGAATACATGCACAACAAGAGTCTTGACTAC 1710
Query 1831 TTCCTC-TT--T--G-----ATCCCTTGAGGAAAATTGTTCTGGATTGGAAGCTGCGGTT 1880
|||||| || | | ||||||||||||||| ||| ||||||||| |||||||||
Sbjct 1711 TTCCTCTTTGGTGAGCTTTCATCCCTTGAGGAAAAACGTTTTGGATTGGACGCTGCGGTT 1770
Query 1881 TAGGATCATGGAAGGGATAATTCAAGGGCTTTTGTACCTTCATAAGTACTCGAGATTGAA 1940
|||||||||||||| ||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct 1771 CAGGATCATGGAAGGAATAATTCAAGGGCTTTT-TACCTTCACAAGTACTCGAGGTTGAA 1829
Query 1941 AGTAATACACAGAGACATCAAAGCCGGCAACATTTTGCTGGACGAGGATATGAACCCCAA 2000
||| ||||||||||||||||||||| | ||||||||||| |||||||||||||| || ||
Sbjct 1830 AGTGATACACAGAGACATCAAAGCCAGTAACATTTTGCTAGACGAGGATATGAATCCGAA 1889
Query 2001 AATATCTGATTTTGGAATGGCTCGGATATTTGGAGCCCAAGAATCCAA-AGCCAACACGA 2059
|||||| ||||||||||||||||||||||||||||| ||||| ||| ||| ||||| |
Sbjct 1890 AATATCGGATTTTGGAATGGCTCGGATATTTGGAGCGGAAGAA-ACAAGAGCAAACACCA 1948
Query 2060 AAAGAGTTGCTGGCACATTTGGCTATATGTCTCCAGAGTACTTCAGAGAGGGATTATTCT 2119
|||||||||||||||||||||||||||||||||| ||||| |||||||| ||| ||||||
Sbjct 1949 AAAGAGTTGCTGGCACATTTGGCTATATGTCTCCGGAGTATTTCAGAGAAGGACTATTCT 2008
Query 2120 CGGCGAAATCAGATGTGTTCAGCTTCGGGGTTCTAATGCTCGAAATCATTTGTGGAAGGA 2179
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 2009 CGGCGAAATCAGATGTGTTCAGCTTCGGAGTTCTAATGCTTGAAATCATTTGTGGAAGGA 2068
Query 2180 AAAACAATAGCTTCCACCATGACTCAGAAGGACCTCTGAATCTCATAGTCCATGTGTGGA 2239
| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 2069 AGAACAATAGCTTCCACCATGACTCAGAAGGACCTTTGAATCTCATAGTTCATGTGTGGA 2128
Query 2240 ATCTGTTTAAAGAGAACCGAGTTCGCGAGGTGATTGATCCATCTTTGGGAGATTCTGCAG 2299
||||||||||||||||| | ||||||||| ||| |||| ||||||||||||||| || |
Sbjct 2129 ATCTGTTTAAAGAGAACAAAATTCGCGAGGCGATAGATCTATCTTTGGGAGATTCGGC-G 2187
Query 2300 -TTGAGAACCCTCAAGTGTTGAGATGCGTTCAAGTTGCTCTGTTGTGTGTACAACAAAAC 2358
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2188 CTTGATTACCCTCAAGTGTTGAGATGCGTTCAAGTTGCTCTGTTGTGTGTACAAGAAAAC 2247
Query 2359 GCAGACGATAGACCAAGTATGTTAGACGTTGTGTCCATGATATACGGTGATGGAAACAAC 2418
||||| ||||||||||||||||||||||||||||| |||||||| || || ||||| ||
Sbjct 2248 GCAGAAGATAGACCAAGTATGTTAGACGTTGTGTCGATGATATATGGCGAAGGAAATAAT 2307
Query 2419 GCTCTTTCTTTGCCTAAAGAGCCAGCTTTCTATGATGGT 2457
||||||||||||||||||||||| |||||||||||||||
Sbjct 2308 GCTCTTTCTTTGCCTAAAGAGCCTGCTTTCTATGATGGT 2346
Score = 806 bits (436), Expect = 0.0
Identities = 629/719 (87%), Gaps = 25/719 (3%)
Strand=Plus/Plus
Query 1 ATGTGGTCAAATTGCATCTTTCTCACTCTTTTTACTTTTTATCTCTTCTTAGGACAATCA 60
||||| ||| || |||||||| || ||||||||||||| | |||||| ||||| ||||||
Sbjct 1 ATGTGTTCATATGGCATCTTTGTCTCTCTTTTTACTTTATCTCTCTTGTTAGGGCAATCA 60
Query 61 TGCTGTCAAACAGATACCCTACTGCAGGGTCAGTACTTGAAAGATGGGCAAGAGCTCGTT 120
||| || ||||||| || |||| |||||||||| |||||||||||||||||||||||||
Sbjct 61 TGCAGTGAAACAGACACGCTACAACAGGGTCAGTTCTTGAAAGATGGGCAAGAGCTCGTT 120
Query 121 TCAGCTTTCAATATCTTCAAACTCAAGTTTTTCAACTTCGAGAATTCAAGCAACTGGTAT 180
|| |||||||| |||||||||||||||||||||||| || |||||||||| |||||||||
Sbjct 121 TCTGCTTTCAAAATCTTCAAACTCAAGTTTTTCAACGTCAAGAATTCAAGAAACTGGTAT 180
Query 181 CTTGGAATTTGGTACAACAATTTTTATC-T--TA--G---T---GG-T---GCTGTTTGG 225
||||||||||||| ||||||| |||||| | || | | || | ||||| |||
Sbjct 181 CTTGGAATTTGGTTCAACAATCTTTATCTTAATACTGATATCCAGGATAGAGCTGTCTGG 240
Query 226 ATTGCTAACCGTAACAATCCAGTTTTGGGACGCTCTGGAAGCCTCACAGTGGACTCTCTT 285
||||||||||||||||||||| | | || ||||||||||||||||||||| || || |||
Sbjct 241 ATTGCTAACCGTAACAATCCAATCTCGGAACGCTCTGGAAGCCTCACAGTTGATTCACTT 300
Query 286 GGCCGATTGAGGATTTTAAGAGGAGCATCAAGCC-TGCTTGAGCTAAGCTCTACGGAAAC 344
||| |||||||||||||||||||| |||||| || |||||||||||||||||||||||||
Sbjct 301 GGCAGATTGAGGATTTTAAGAGGATCATCAA-CCATGCTTGAGCTAAGCTCTACGGAAAC 359
Query 345 CACAGGAAACACAACCCTTAAGCTGTTGGATTCTGGAAATCTTCAGCTCCAAGAGATGGA 404
|| | ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 360 CAGAAGAAACACAACCCTTAAGCTTTTGGATTCTGGAAATCTTCAGCTCCAAGAGATGGA 419
Query 405 TTCTGATGGATCGATGAAGCGGACGTTGTGGCAAAGTTTTGATTATCCAACAGATACTCT 464
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||
Sbjct 420 TTCTGATGGATCGATGAAGCGGGTTTTGTGGCAAAGTTTCGATTATCCAACAGATACACT 479
Query 465 TCTTCCGGGGATGAAACTGGGTTTCAATGTCAAGACCGGAAAGAGATGGGAACTGACATC 524
|||||| ||||||||||| |||||| |||||||||| || ||||||||||||||||||||
Sbjct 480 TCTTCCTGGGATGAAACTCGGTTTCGATGTCAAGACTGGGAAGAGATGGGAACTGACATC 539
Query 525 ATGGCTAGGTGATACTTTACCCGCTTCTGGATCTTTTGTCTTTGGGATGGATGATAATAT 584
|||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 540 ATGGCTAGATGATACTTTACCTGCTTCTGGATCTTTTGTCTTTGGGATGGATGCTAATAT 599
Query 585 TACAAACCGGTTGACCATCTTGTGGCTTGGTAACGTGTATTGGGCAAGTGGGCTCTGGTT 644
||||||| | |||||||||||||||| ||| ||| ||||||| |||| ||||||||||
Sbjct 600 TACAAACAGATTGACCATCTTGTGGCGTGGAAACACGTATTGGACAAGCGGGCTCTGGTA 659
Query 645 TAAGGGT-GGCTTTTC-GTTGGAGAAATTAAACACGAA--CGGTTTCATCTTCTCCTTC 699
||| ||| || ||||| | | || | |||||| ||| ||||||| |||| ||||||
Sbjct 660 TAAAGGTCGG-TTTTCCGAAG-AGGAGTTAAAC--GAATGCGGTTTCCTCTTTTCCTTC 714
> Ahg887311 jgi|Araly1|887311|Al_scaffold_0810_1
Length=708
Score = 1005 bits (544), Expect = 0.0
Identities = 658/713 (92%), Gaps = 7/713 (1%)
Strand=Plus/Plus
Query 1843 CCCTTGAGGAAAATTGTTCTGGATTGGA-AGCTGCGGTTTAGGATCATGGAAGGGATAAT 1901
||||||||||||| || ||||||||| | |||||||| ||||||||||||||||||||
Sbjct 1 CCCTTGAGGAAAAACATTTTGGATTGGACA-CTGCGGTTCAGGATCATGGAAGGGATAAT 59
Query 1902 TCAAGGGCTTTTGTACCTTCATAAGTACTCGAGATTGAAAGTAATACACAGAGACATCAA 1961
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 60 TCAAGGGCTTTTGTACCTTCACAAGTACTCGAGATTGAAAGTGATACACAGAGACATCAA 119
Query 1962 AGCCGGCAACATTTTGCTGGACGAGGATATGAACCCCAAAATATCTGATTTTGGAATGGC 2021
|||| |||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 120 AGCCAGCAACATTTTACTGGACGAGGATATGAATCCCAAAATATCCGATTTTGGAATGGC 179
Query 2022 TCGGATATTTGGAGCCCAAGAATCCAAAGCCAACACGAAAAGAGTTGCTGGCACATTTGG 2081
||||||||||||||| |||||||||| ||| ||||| |||||||||||||||||| ||
Sbjct 180 TCGGATATTTGGAGCGCAAGAATCCAGAGCTAACACCAAAAGAGTTGCTGGCACA---GG 236
Query 2082 CTATATGTCTCCAGAGTACTTCAGAGAGGGATTATTCTCGGCGAAATCAGATGTGTTCAG 2141
||||||||||| |||||||||||||| ||| | |||||||||||||||||||| || ||
Sbjct 237 ATATATGTCTCCGGAGTACTTCAGAGAAGGACTGTTCTCGGCGAAATCAGATGTATTTAG 296
Query 2142 CTTCGGGGTTCTAATGCTCGAAATCATTTGTGGAAGGAAAAACAATAGCTTCCACCATGA 2201
|||||| ||||||||| | |||||||||||||||||||| ||||||||||||||||||||
Sbjct 297 CTTCGGAGTTCTAATGTTGGAAATCATTTGTGGAAGGAAGAACAATAGCTTCCACCATGA 356
Query 2202 CTCAGAAGGACCTCTGAATCTCATAGTCCATGTGTGGAATCTGTTTAAAGAGAACCGAGT 2261
||||||||||||||||||||||||||| |||||||||| |||||| ||||| ||||| ||
Sbjct 357 CTCAGAAGGACCTCTGAATCTCATAGTTCATGTGTGGAGTCTGTTCAAAGATAACCGCGT 416
Query 2262 TCGCGAGGT-GATTGATCCATCTTTGGGAGATTCTGCAGTTGAGAACCCTCAAGTGTTGA 2320
|| |||||| | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 TCACGAGGTTG-TAGATCCATCTTTGGGAGATTCTGCAGTTGAGAACCCTCAAGTGTTGA 475
Query 2321 GATGCGTTCAAGTTGCTCTGTTGTGTGTACAACAAAACGCAGACGATAGACCAAGTATGT 2380
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 476 GATGCGTTCAAGTTGCTCTGTTGTGTGTACAACAAAACGCAGAAGATAGACCAAGTATGT 535
Query 2381 TAGACGTTGTGTCCATGATATACGGTGATGGAAACAACGCTCTTTCTTTGCCTAAAGAGC 2440
|||| |||||||| ||||||||||| || || ||||||||| ||||||||||||| ||||
Sbjct 536 TAGATGTTGTGTCGATGATATACGGCGACGGCAACAACGCTTTTTCTTTGCCTAACGAGC 595
Query 2441 CAGCTTTCTATGATGGTCCCCCGAGAAGCTCGCCGGAGATGGAAGTTGAGCCACCGGAGA 2500
||||||||||||||||||| | |||||||||||||||||| || ||||||||||| |||
Sbjct 596 CAGCTTTCTATGATGGTCCTCGGAGAAGCTCGCCGGAGATTGATGTTGAGCCACCTGAGC 655
Query 2501 TGGAAAATGTATCGGCAAATAGAGTTACAATCACAGTGATGGAAGCAAGATGA 2553
|||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 656 TGGAAAATGTATCGGCAAATAGAGTTACCATCACAGTGATGGAAGCAAGATGA 708
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96254049115
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5