BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G16100.1
Length=953
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479064 jgi|Araly1|479064|fgenesh2_kg.3__1765__AT3G16100.1 1175 0.0
> Ahg479064 jgi|Araly1|479064|fgenesh2_kg.3__1765__AT3G16100.1
Length=808
Score = 1175 bits (636), Expect = 0.0
Identities = 757/814 (93%), Gaps = 14/814 (2%)
Strand=Plus/Plus
Query 89 AAAAGCATCAATGGCTTCTCGGCGGCGAGTGCTTCTGAAGGTTATAATTCTCGGAGACAG 148
|||| |||||||||||||||| |||||||||||||| |||||||| ||||||||||||||
Sbjct 1 AAAAACATCAATGGCTTCTCGCCGGCGAGTGCTTCTCAAGGTTATTATTCTCGGAGACAG 60
Query 149 TGGGGTTGGGAAGACGTCCTTGATGAATCAGTTTGTGAATCGAAAATTCAGTAATCAGTA 208
||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 61 TGGGGTTGGGAAGACCTCCTTAATGAATCAGTTTGTGAATCGAAAATTTAGTAATCAGTA 120
Query 209 TAAAGCTACCATTGGAGCTGATTTCTTGACCAAAGAGGTCCAAATTGATGACAGAATCTT 268
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 121 TAAAGCTACCATTGGAGCTGATTTCTTGACCAAAGAGGTCCAAATTGATGACCGAATCTT 180
Query 269 CACTTTGCAGATTTGGGATACTGCAGGGCAAGAGAGGTTCCAAAGTTTGGGTGTTGCTTT 328
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 181 CACTTTGCAGATTTGGGATACTGCTGGGCAAGAGAGGTTTCAAAGTTTGGGTGTTGCTTT 240
Query 329 CTACCGAGGAGCGGACTGTTGTGTTCTTGTGAATGATGTCAATGTTATGAAATCCTTTGA 388
|||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 241 CTACCGAGGAGCCGATTGTTGTGTTCTTGTGAATGATGTCAATGTCATGAAATCCTTTGA 300
Query 389 AAATCTTAACAACTGGAGGGAAGAGTTCCTGATCCAGGCTAGTCCTTCAGATCCTGAAAA 448
|||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 301 AAATCTTAACAACTGGAGGGAAGAGTTCTTGATCCAGGCTAGTCCTTCTGATCCTGAAAA 360
Query 449 CTTCCCCTTCGTTGTCTTGGGGAACAAGACAGATGTTGACGGTGGAAAGAGTCGAGTGGT 508
|||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CTTCCCTTTTGTTGTGTTGGGGAACAAGACAGATGTTGACGGTGGAAAGAGTCGAGTGGT 420
Query 509 TACTGAGAAGAAAGCAAAATCTTGGTGTGCATCCAAGGGAAACATTCCTTACTTCGAGAC 568
| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TTCTGAGAAGAAAGCAAAGGCTTGGTGTGCATCCAAGGGAAACATTCCTTACTTCGAGAC 480
Query 569 TTCGGCCAAAGATGGAGTCAATGTTGATGCAGCTTTCGAATGCATTGCCAAAAATGCTCT 628
||| || ||||| ||| |||||||||||||||||||||| ||||| ||||||||||| ||
Sbjct 481 TTCAGCGAAAGAAGGATTCAATGTTGATGCAGCTTTCGAGTGCATAGCCAAAAATGCCCT 540
Query 629 CAAGAATGAACCTGAAGAAGAAGTGTACCTTCCGGACACCATTGATGTAGCTGGGGCTCG 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CAAGAATGAACCTGAAGAAGAAGTGTACCTTCCGGACACCATTGATGTAGCTGGGGCTCG 600
Query 689 GCAACAAAGATCAACTGGGTGCGAATGCTAACCAACTTTGTTGCATGGTTTATTAGAAAG 748
||||||||||||||||||||| ||||||||||||||| ||||||| || |||||||||||
Sbjct 601 GCAACAAAGATCAACTGGGTGTGAATGCTAACCAACTCTGTTGCAAGGATTATTAGAAAG 660
Query 749 AACATGTGTTTTAAGGAGAGACCTTTTTA----GTTTCTTTGGCATTATTGTGATGTGTA 804
| ||||| ||| || ||||||||||||| ||||||||| |||||||||||||||||
Sbjct 661 AGCATGT-TTTAAA--AGAGACCTTTTTAATTAGTTTCTTTGACATTATTGTGATGTGTA 717
Query 805 TCAATTAGCATA-CGCACCTTTGTTT-TGGATTACAGAATCAAAAACGAATTTT-GGTCA 861
|||||||||||| | ||||||||||| | | || ||| |||||| |||||| |||||
Sbjct 718 TCAATTAGCATAAC-CACCTTTGTTTCTTTCTG-CA-AATTAAAAACAAATTTTTGGTCA 774
Query 862 CCTGTT-CATTCTTAATCTCTTCAGCTTGTCGTA 894
| |||| ||||||||||||||||||||| |||||
Sbjct 775 CTTGTTTCATTCTTAATCTCTTCAGCTTCTCGTA 808
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35378066976
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5