BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G16130.1
Length=1993
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479067 jgi|Araly1|479067|fgenesh2_kg.3__1768__AT3G16130.1 2516 0.0
Ahg337379 jgi|Araly1|337379|fgenesh1_pg.C_scaffold_1003944 758 0.0
> Ahg479067 jgi|Araly1|479067|fgenesh2_kg.3__1768__AT3G16130.1
Length=1994
Score = 2516 bits (1362), Expect = 0.0
Identities = 1586/1690 (94%), Gaps = 32/1690 (2%)
Strand=Plus/Plus
Query 331 TTGAGATTCCGTGGATTGCAAGCTAAGTCGTGTTATTTTGCATATGTTACAGA-ATTGGA 389
||||| || ||||||||||||||||| || ||||||||||||||||||||||| | |||
Sbjct 310 TTGAGGTTTCGTGGATTGCAAGCTAATTCATGTTATTTTGCATATGTTACAGAGA-AGGA 368
Query 390 GCAGATGAAAGATAAGTTTGCAAAATTGCTTTTAGGAGAAGACATGTCAGGAGGGAGCAA 449
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 369 GCAGATGAAAGATAAGTTTGCGAAATTGCTTTTAGGAGAAGACATGTCAGGAGGAAGCAA 428
Query 450 AGGCGTTTCTTCAGCGTTAGCATTATCAAACGCAATCACAAATCTTGCAGCTTCTGCGTT 509
||| ||||| ||||| || ||||||||||||||||||||||||||| | |||||||||||
Sbjct 429 AGGTGTTTCGTCAGCTTTGGCATTATCAAACGCAATCACAAATCTTTCTGCTTCTGCGTT 488
Query 510 TGGAGAAATACGGCGTTTAGAGGCAATATCCGAGGATAAAAAAGAACGATGGAGAAGAGA 569
||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 489 TGGAGAACTACGGCGTTTAGAGCCAATATCCGAGGATAGAAAAGAACGATGGAGAAGAGA 548
Query 570 AATCGGATGGCTTCTCTCTGTTACTGATCATATAGTTGAATTCTCTCCAACACACCAAAC 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 549 AATCGGATGGCTTCTCTCTGTTACTGATCATATAGTTGAATTCTCTCCAACACACCATAC 608
Query 630 TAACGAGGATGGATCTTCCATGGAGGTAATGACTACAAAACAAAGAACTGATCTTGTCTC 689
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 609 TAACGAGGATGGATCTTCCATGGAGGTAATGACTACAAAACAAAGAACAGATCTTGTCTC 668
Query 690 CAACATTCCTTCTCTAAAGAAACTCGATGAAATGCTCCTCGATTGTCTTGATAAAT-TCA 748
|||||||||| |||| ||||||||||| |||||||||||||||||||||||||||| | |
Sbjct 669 CAACATTCCTGCTCTTAAGAAACTCGACGAAATGCTCCTCGATTGTCTTGATAAATAT-A 727
Query 749 AAGATCAGGATGAGTTTTACTACGTCACACCCGGTTCTCCGGAATCTGAAAACAGTAACT 808
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 728 AAGAACAGGATGAGTTTTACTACGTCACACCAGGTTCTCCGGAATCTGAAAACAGTAACT 787
Query 809 CGACCAGGAACGATGATAAATGGTGGCTTCCGATTGTAAAAGTTCCACCTAAAGGCTTAT 868
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 788 CGACCAGGAACGATGATAAATGGTGGCTTCCGATTGTTAAAGTTCCACCTAAAGGCTTAT 847
Query 869 CAGAAACTTTGAAAAGGTTTTTACTAAGTCA-AAGAGAGTGTGTGTGCCAAGTGCTTAAT 927
| ||||| |||||||| ||| |||| ||||| || |||||||||| ||||||||||||||
Sbjct 848 CTGAAACGTTGAAAAGATTTCTACTGAGTCAGAA-AGAGTGTGTGAGCCAAGTGCTTAAT 906
Query 928 TCCGCAATGGCCATAAACTCTCAAGTTCTTACTGAAATGGAGATCCCTGAGAGCTACATC 987
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 907 TCCGCAATGGCCATAAACTCTCAAGTTCTTACTGAAATGGAGATCCCTGAGAGCTACATC 966
Query 988 GACTCACTTCCTAAGAAAGGGAGAGCTAGTCTTGGAGACATGATCTATAGAATGATAACA 1047
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 967 GACTCACTTCCTAAGAAAGGGAGAGCTAGTCTTGGAGACATGATCTATAGAATGATAACA 1026
Query 1048 TTAGAGATGTTTGATGCAGAGCAATTTCTTCTTGAAATGGATTTATCATCTGAGCACAAG 1107
||||||||||||||||||||||| || |||| |||||||||||||||||| |||||||||
Sbjct 1027 TTAGAGATGTTTGATGCAGAGCAGTTCCTTCATGAAATGGATTTATCATCGGAGCACAAG 1086
Query 1108 ATTCTTGATTTAAAGAACAAATTCGAAGCTTCGGTTGTTATATGGCAGAGAAAGATAGTG 1167
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1087 ATTCTTGATTTAAAGAACAAATTCGAAGCTTCGGTTGTGATATGGCAGAGAAAGATAGTG 1146
Query 1168 CAAATAGACAACAAGTCATCGTCTCCGTGGAGTACGAATTTGAGTATGGATAAGAGACAA 1227
|| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1147 CAGATAGACAACAAGTCATCGTCTCCATGGAGTACGAATTTGAGCATGGATAAGAGACAA 1206
Query 1228 CAGTTAGAAGAAAGAGCAGCAACCATTTTGCAACTTATCAAACAAGAATTCCCAGGGATC 1287
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1207 CAGTTAGAAGAAAGAGCAGCAACCATTTTGCAACTTATTAAACAAGAATTCCCAGGGATC 1266
Query 1288 TCTCAATCCACACTTGACATCAGCAAGATTCAATTCAACAGAGATATAGGGTTAGCTATA 1347
|||||||| ||||||||||| ||||||||||||||||||| ||||||||| |||||||||
Sbjct 1267 TCTCAATCTACACTTGACATTAGCAAGATTCAATTCAACAAAGATATAGGTTTAGCTATA 1326
Query 1348 GTGGAGAGTTATTCGAGAATTCTTGAAAGCTTGGCTCACACGGTAATGTCAAGAATAGAA 1407
||||||||||| |||||||||||||| |||||||| |||||| |||||||||||||||||
Sbjct 1327 GTGGAGAGTTACTCGAGAATTCTTGAGAGCTTGGCGCACACGATAATGTCAAGAATAGAA 1386
Query 1408 GATGTTCTTGAAGCTGATCAGCTAACACAAAACCCTGAGCTCGCGATGTGTAAGATCCAT 1467
|||||||||||||||||||||||||||||||||||||| |||||| | ||||||| |||
Sbjct 1387 GATGTTCTTGAAGCTGATCAGCTAACACAAAACCCTGAACTCGCGGTTTGTAAGAGACAT 1446
Query 1468 ATAGTGAAGGAAACAGAGAGTCCAGAGAAGGAAGAAGAGCCAAATTTTTGTCTTTTAGAA 1527
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1447 ATAGTGAAGGAAACAGAGAGTCCAGAGAAGGAAGAAGAACCAAACTTTTGTCTTTTAGAG 1506
Query 1528 GATAGACCTAAAAAGCAGAAGCCTACCATTTCACTATCTGAGGTAATGCAATGGAATATC 1587
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1507 GAGAGACCGAAAAAGCAGAAGCCTACCATTTCACTATCTGAGGTAATGCAATGGAATATC 1566
Query 1588 GAAACCAATGAACCGAGGAAAGAAAAGAGCGA--CA---A-----GA---A---A----- 1626
|||||||||||||||| ||||||||||||||| || | || | |
Sbjct 1567 GAAACCAATGAACCGAAGAAAGAAAAGAGCGATGCACCGATAAAAGATTCAGGCAAGAAA 1626
Query 1627 CTTTTAACCAGAGTGTCAAGCATGATCATGTCTAACAACAAGAAGACTACTT---ATCTT 1683
|| || |||||||||||||||||||||||| |||||||||||||| |||||| |||||
Sbjct 1627 CTGTTGACCAGAGTGTCAAGCATGATCATGGCTAACAACAAGAAGCCTACTTCTTATCTT 1686
Query 1684 GAATCTCTTGGAACCACAAGAAGTCCAACCGCGGGGCGATACTCTTGaaaaaaaaaaTAT 1743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1687 GAATCTCTTGGAACCACAAGAAGTCCAACCGCGGGGCGATACTCTTGAAAAAAAAAAGAT 1746
Query 1744 TTCTTTTGTAAAATTAGGGGAAGAAAAAACGTTTCAAATGTAACAGATAAACAGAATATA 1803
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1747 TTCTTTTGTAAAATTAGGGGAAGAAAAAACGTTTCAAATGTAACTGATAAACAGAATATA 1806
Query 1804 CATAAAATTACTTAAAAGGGTTTGCAGTATTGAGAAATGTTGATGAGTTTTAGAAGGAAG 1863
|||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1807 CATAAAATCACTTAAA-GGGTTTGAAGTATTGAGAAATGTTGATGAGTTTTAGAAGGAAG 1865
Query 1864 AAGAGAAAGGTAACATGAATATAGATCAGAGCTTGCCGCGAGGACCGAGCTTAGGCGGCT 1923
||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||| ||
Sbjct 1866 AAGAGAA-GGTAACATGAATATAAATCAGAGCTTGCCACGAGGACCGAGCTTAGGCTTCT 1924
Query 1924 CCTGAGGACCTCTCTTGATGGGAAGAACTTCGCCGGTAGAGGTAGCGCTGACATAAGTAA 1983
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1925 CCTGAGGACCTCTCTTGATGGGAAGAACCTCGCCGGTGGAGGTAGCGCTGACATAAGTAA 1984
Query 1984 GCAAAGAGCC 1993
||||||||||
Sbjct 1985 GCAAAGAGCC 1994
Score = 326 bits (176), Expect = 5e-88
Identities = 248/280 (89%), Gaps = 15/280 (5%)
Strand=Plus/Plus
Query 1 ATGGTGAAAGCGAGTGAGAAAGAACATGAAAAG-TACAAGCCGAAATTGTTCGATTTAGA 59
|||||||||||| ||||| |||||| | |||| |||||| | |||||||| ||||||||
Sbjct 1 ATGGTGAAAGCGGGTGAGCGAGAACAAG-AAAGCTACAAGTCTAAATTGTTAGATTTAGA 59
Query 60 GAACGTGAAGAAGAAGAACTCATCTTCAAGGCATTTCAAGAGATGGAACTCAGATTCCGC 119
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 GACCGTGAAGAAGAAGAACTCATCTTCAAGGCATTTCAAGAGATGGAACTCAGATTCCGC 119
Query 120 CTTGAGAATTGAAGATCCAGACATTGATGATGGCACTGTTTTCAAGAAAACCGCGACCTC 179
||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||
Sbjct 120 CTTGAGAATTGAAGATCCAGACATTGATGATGGCACTGTGTTCAGGAAAACGGCGACCTC 179
Query 180 CAGCATCCAGCCAATTCTACCGGTTCTG---GC-TAT-G----G-ATGAG-CAACCTCAG 228
|||||||| |||||||||||| ||| | || | | | | ||||| || ||||||
Sbjct 180 AAGCATCCAACCAATTCTACCGCTTC-GACCGCCTCTTGTTAAGGATGAGGCA-CCTCAG 237
Query 229 CCGCGTGAAGCAACTGATGAAGAATCACAGAAAGATTCAG 268
||||||||||||||||||||||||| |||| |||||||||
Sbjct 238 CCGCGTGAAGCAACTGATGAAGAATTACAGCAAGATTCAG 277
> Ahg337379 jgi|Araly1|337379|fgenesh1_pg.C_scaffold_1003944
Length=1617
Score = 758 bits (410), Expect = 0.0
Identities = 864/1077 (80%), Gaps = 56/1077 (5%)
Strand=Plus/Plus
Query 386 TGGAGCAGATGAAAGATAAGTTTGCAAAATTGCTT-TTAGGAGAAGACATGTCAGGAGGG 444
||||||| |||||||| || ||| | ||||||||| || |||||||| ||||||||| ||
Sbjct 299 TGGAGCAAATGAAAGAGAAATTTTCGAAATTGCTTCTT-GGAGAAGATATGTCAGGA-GG 356
Query 445 A-GCAAAGGCGTTTCTTCAGCGTTAGCATTATCAAACGCAATCACAAATCTTGCAGCTTC 503
| | ||||| ||||| || || || || ||||| ||||| || || || || ||||||||
Sbjct 357 AGGAAAAGGTGTTTCATCGGCTTTGGCTTTATCTAACGCCATTACCAACCTCGCAGCTTC 416
Query 504 TGCGTTTGGAGAA-ATACGGCGTTTAGAGGCAATATCCGAGGATA-AAAAAGAACGATGG 561
||| ||||||||| | ||||||||||||| |||| | | ||||| ||||| || |||
Sbjct 417 TGCATTTGGAGAACA-ACGGCGTTTAGAGCCAATGGCGGCGGATAGAAAAA-CGCGTTGG 474
Query 562 AGAAGAGAAATCGGATGGCTTCTCTCTGTTACTGATCATATAGTTGAATTCTCTCCAACA 621
|| |||||||| ||||||||| ||||||| |||||||||||||||||||| ||||||||
Sbjct 475 AGGAGAGAAATTGGATGGCTTATCTCTGTGGCTGATCATATAGTTGAATTCGCTCCAACA 534
Query 622 CACCAAACTAACGAGGATGGAT-CTTCCATGGAGGTAATGACTACAAAACAAAGAACTGA 680
|| ||||| ||| | ||||| | |||| ||||| || ||| | |||| ||||||||| ||
Sbjct 535 CAACAAACAAACAAAGATGG-TACTTCAATGGAAGTCATGTCAACAAGACAAAGAACAGA 593
Query 681 TCTTGTCTCCAACATTCCTTCTCTAAAGAAACTCGATGAAATGCTCCTCGATTGTCTTGA 740
|||| ||| ||||| ||| | || ||||||||||||| ||||| ||||||||||||||
Sbjct 594 TCTTCTCTGTAACATCCCTGCACTTAAGAAACTCGATGCTATGCTTCTCGATTGTCTTGA 653
Query 741 TAAATTCAAAGATCAGGATGAGTTTTACTACGTCACACCCGGTTCTCCGGAATCTGAAAA 800
||||||||| ||||||||||||||||| || |||| | | |||||| || |||
Sbjct 654 TAAATTCAAGGATCAGGATGAGTTTTATTATGTCAAAAAAGATTCTCCTGATTCT----T 709
Query 801 CAGTAACTCGACCAGGAACGATGATAAATGGTGGCTT-CCGATTGTAAAAGTTCCACCTA 859
| | | ||| ||||||||||| ||||||||| || ||| |||||||| |||||||
Sbjct 710 CCG--A---GACAAGGAACGATGAGAAATGGTGG-TTACCGGCAGTAAAAGTCCCACCTA 763
Query 860 A-AGGCTTATCAGAAACT-TTGAAAAGGTTTTTACTA-AGTCA-AAGAGAGTGTGTGTGC 915
| ||| | ||||| | | | || ||||||| | | | || || ||| || ||||||
Sbjct 764 ACGGGC-TCTCAGAGA-TATCGAGAAGGTTTCT-CCAGAGCCAGAAG-GAATGTGTGAAT 819
Query 916 CAAGTGCTTAATTCCGCAATGGCCATAAACTCTCAAGTTCT-TACTGAAATGGAGATCCC 974
||||| ||||| | |||||||| |||||| |||||||||| | ||||||||||||| ||
Sbjct 820 CAAGTCCTTAAAGCTGCAATGGCGATAAACGCTCAAGTTCTGT-CTGAAATGGAGATTCC 878
Query 975 TGAGAGCTACATCGACTCACTTCCTAAGAAAGGGAGAGCTAGTCTT-GGAGACATGATCT 1033
||| |||||| | || |||||||||||||| ||||||||||| ||| ||||| |||| |
Sbjct 879 TGAAAGCTACCTTGAGTCACTTCCTAAGAATGGGAGAGCTAG-CTTGGGAGATGTGATAT 937
Query 1034 ATAGAATGATAACATTAGAGATGTTTGATGCAGAGCAATTTCTTCTTGAAATGGATTTAT 1093
| |||||||||||| ||||||||||||||||||| ||||| ||| |||||||||||||||
Sbjct 938 ACAGAATGATAACAGTAGAGATGTTTGATGCAGATCAATTCCTTATTGAAATGGATTTAT 997
Query 1094 CATCTGAGCACAAGATTCTTGATTTAAAGAACA-AATTCGAAGCTTCGGTTGTTATATGG 1152
||||||||||||||||||||||||||||||||| ||| |||||| ||| |||| ||||||
Sbjct 998 CATCTGAGCACAAGATTCTTGATTTAAAGAACAGAAT-CGAAGCATCGATTGTGATATGG 1056
Query 1153 CAGAG-AAAGATAGTGCAAATAG-ACAACAA-GTCATCGTCTCCGTGGAGTACGA-ATTT 1208
|||| ||| || ||||| | || ||| ||| ||| || | | | ||| | | | | |
Sbjct 1057 AAGAGGAAA-ATGGTGCAGA-AGGACA-CAAAGTC-TCCT-TG-G-GGA-T-CAACAGT- 1106
Query 1209 GAGTATGGATAAGAGACAACAGTTAGAAGAAAGAGCAGCAACCATTTTGCAACTTATC-A 1267
|||||| || || ||| ||||||| ||||| ||||| | ||| || |||| ||| || |
Sbjct 1107 GAGTATTGAGAAAAGAGAACAGTTTGAAGAGAGAGCTGAAACAATCTTGCTACT-ATTGA 1165
Query 1268 AACAAGAATT-CCCAGGGATCTCTCAATCCACACTTGACATCAGCAAGATTCAATTCAAC 1326
|||||| || ||| || ||||| || ||| | || || |||||||||||||||||||||
Sbjct 1166 AACAAGGGTTTCCC-GGAATCTCACAGTCCTCGCTCGATATCAGCAAGATTCAATTCAAC 1224
Query 1327 AGAGATATAGGG-TTAGCTATAGTGGAGAGTTATTCGAGAATTCTTGAAAGCTTGGCTCA 1385
|||||| |||| || || || |||||||||| || ||| | ||||| || ||||||||
Sbjct 1225 AGAGATGTAGGACTT-GCAATCTTGGAGAGTTACTCAAGAGTGCTTGAGAGTTTGGCTCA 1283
Query 1386 CACGGTAATGTCAAGAATAGAAGATGTTCTTGAAGCTGATCAGCTAACACAA-AACC 1441
||| || ||||| ||||||||||| || ||| | ||||| ||||| || ||| ||||
Sbjct 1284 CACCGTGATGTCGAGAATAGAAGACGTCCTTTACGCTGACCAGCTTACTCAAGAACC 1340
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74923511915
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5