BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G16150.1
Length=1280
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479069 jgi|Araly1|479069|fgenesh2_kg.3__1770__AT3G16150.1 1807 0.0
> Ahg479069 jgi|Araly1|479069|fgenesh2_kg.3__1770__AT3G16150.1
Length=1216
Score = 1807 bits (978), Expect = 0.0
Identities = 1154/1236 (93%), Gaps = 24/1236 (2%)
Strand=Plus/Plus
Query 1 CCATCATTCTCGGTTTAACTGTGAAACACATAAATAAAACAAAGAGAAAGAGAGAGAATA 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||| | || |
Sbjct 1 CCATCATTCTCGGTTAAACTGTGAAACACATAAATAAAACAAAGAGAAAGAGATA-AA-A 58
Query 61 TGGGTGGGTGGGCAATCGCAGTACACGGTGGTGCCGGTATCGACCCTAATCTTCCGGCGG 120
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 59 TGGGTGGGTGGGCAATCGCAGTACACGGTGGTGCCGGAATCGACCCTAATCTTCCGGCGG 118
Query 121 AGAGACAAGAAGAGGCTAAACAGCTTTTAACTCGTTGTCTCAACCTCGGCATAATAGCTT 180
|||||||||||||||| ||||||||||| ||||||||||| |||||||||||| ||||||
Sbjct 119 AGAGACAAGAAGAGGCGAAACAGCTTTTGACTCGTTGTCTTAACCTCGGCATAGTAGCTT 178
Query 181 TGCGTTCCAATGTCTCCGCCATTGACGTCGTTGAGCTCGTCATTAGAGAATTGGAGACGG 240
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 TGCGTTCAAATATCTCCGCCATTGACGTCGTTGAGCTCGTCATTAGAGAATTGGAGACGG 238
Query 241 ATCCTCTGTTTAATTCAGGCCGTGGATCTGCTTTGACGGAAAAAGGAACGGTTGAGATGG 300
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 239 ATCCTCTGTTTAATTCAGGCCGTGGATCTGCTTTGACGGAGAAAGGAACGGTGGAGATGG 298
Query 301 AAGCTAGCATTATGGACGGTACGAAGAGACGATGCGGTGCCGTTTCGGGGATAACCACCG 360
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 AAGCTAGCATAATGGACGGTACGAAGAGACGATGCGGTGCCGTTTCGGGGATAACCACCG 358
Query 361 TGAAAAATCCTATATCTCTTGCTCGTCTCGTCATGGACAAATCTCCCCACTCTTACCTTG 420
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 TGAAGAATCCAATATCTCTTGCTCGTCTCGTCATGGACAAATCTCCCCACTCTTACCTTG 418
Query 421 CTTTCTCAGGTGCAGAGGATTTCGCCCGCAAACAGGGAGTTGAAATTGTGGACAACGAGT 480
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 419 CTTTCTCTGGTGCAGAGGATTTCGCCCGCAAACAGGGAGTTGAAATTGTGGACAATGAGT 478
Query 481 ACTTTGTCACGGACGACAACGTAGGAATGCTCAAGTTGGCCAAGGAAGCTAACTCCATCT 540
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 ACTTCGTCACGGACGACAACGTAGGAATGCTCAAGTTGGCCAAGGAAGCTAACTCCATCT 538
Query 541 TGTTTGATTACCGGATTCCGCCGATGGGATGTGCCGGTGCAGCTGCGACCGACAGTCCAA 600
|||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||
Sbjct 539 TGTTTGATTACCGGATCCCGCCGATGGGATGTGCCGGTGCAGCCGCAACCGACAGTCCAA 598
Query 601 TCCAAATGAACGGTCTTCCGATCAGCATTTACGCACCGGAGACAGTCGGG-TGCGTTGTG 659
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 599 TCCAAATGAACGGTCTTCCGATCAGCATTTACGCACCGGAGACAGT-GGGATGCGTTGTG 657
Query 660 GTTGACGGGAAAGGACATTGTGCCGCCGGGACATCCACGGGTGGTTTAATGAACAAGATG 719
||||||||| |||||| |||||||||||||||||||| |||||||| ||||||||||||
Sbjct 658 GTTGACGGGGAAGGACGGTGTGCCGCCGGGACATCCACTGGTGGTTTGATGAACAAGATG 717
Query 720 ATGGGAAGGATTGGTGACTCGCCGCTGATAGGAGCCGGGACGTATGCGTCGGAGTTTTGT 779
||||| ||||| || |||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 718 ATGGGGAGGATCGGAGACTCGCCGCTGATAGGAGCTGGGACGTATGCGTCGGACTTTTGT 777
Query 780 GGTGTGTCGTGTACCGGAGAAGGAGAAGCCATTATAAGAGCAACCCTAGCTCGTGATGTG 839
|| ||||||||||||||||||||||||||||| |||||||| || |||||||||||||||
Sbjct 778 GGGGTGTCGTGTACCGGAGAAGGAGAAGCCATCATAAGAGCGACGCTAGCTCGTGATGTG 837
Query 840 TCAGCTGTTATGGAGTATAAAGGACTTAACCTCCAAGAAGCGGTTGATTACGTCATCAAG 899
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 TCAGCTGTTATGGAGTACAAAGGACTTAACCTCCAAGAAGCGGTTGATTACGTCATCAAG 897
Query 900 CATCGACTTGACGAAGGGTTCGCTGGACTCATTGCTGTCTCGAATAAAGGAGAGGTGGTT 959
||| |||| || |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 898 CATAGACTCGATGAAGGGTTCGCTGGACTCATTGCTGTGTCGAATAAAGGAGAGGTGGTT 957
Query 960 TGTGGTTTTAACTCTAATGGGATGTTCAGGGGATGTGCAACTGAGGATGGATTCATGGAG 1019
|| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 958 TGCGGTTTTAACTCTAATGGGATGTTCAGGGGATGTGCAACGGAGGATGGGTTCATGGAG 1017
Query 1020 GTTGCTATTTGGGAGTGAGAAATATTTT-AGATTAAGAAAATGTCTTACTAGTATTTAAT 1078
|||||||||||||||||||||||||||| ||||||||||||||| ||| |||||| ||
Sbjct 1018 GTTGCTATTTGGGAGTGAGAAATATTTTTAGATTAAGAAAATGTATTA---GTATTTGAT 1074
Query 1079 CAGTCATCGCTCTATTAATTTGGTTATTCATTATCATAAAGCTGGAGGAGTAAATTTAGT 1138
|||||| |||||||||||||||||||||||||| ||||| |||||| |||||||||||
Sbjct 1075 TAGTCATGGCTCTATTAATTTGGTTATTCATTATAATAAATCTGGAGTAGTAAATTTAGA 1134
Query 1139 TATGTCGTTATCACCAGTCCTATATTGATTTGTGTTTAATGCGGTTTCAAATGGTTAGTT 1198
||| | | | || ||| | |||||||| |||||| |||||| ||| |||| ||
Sbjct 1135 TAT-T--T---C----GT--TAT-T-GATTTGTGCTTAATGTGGTTTCTAATTGTTAATT 1180
Query 1199 CGTGTTTAAAAT-T-GTTGATCTGTCTCAGCTCCAT 1232
||||||||||| | |||||||||| |||||| |||
Sbjct 1181 CGTGTTTAAAAAATCGTTGATCTGTTTCAGCTTCAT 1216
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47844260835
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5