BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G16170.1
Length=1980
Score E
Sequences producing significant alignments: (Bits) Value
Ahg318392 jgi|Araly1|318392|fgenesh1_pm.C_scaffold_3001408 2843 0.0
> Ahg318392 jgi|Araly1|318392|fgenesh1_pm.C_scaffold_3001408
Length=1827
Score = 2843 bits (1539), Expect = 0.0
Identities = 1725/1814 (95%), Gaps = 16/1814 (1%)
Strand=Plus/Plus
Query 1 AAGAGTTTCAACTACTTGTCTTTAATTAACCATCGACTCAACCACAACTCCTACGCTATT 60
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 22 AAGAGTTTCAACTACTTGTCTTTAATTAACCATCGACTCAACCACAACACATACGCTATT 81
Query 61 CTCTCCTCTCCTCTTCTTCCTCGA--TC-CCACCCAGCT-TCTACTTCGTTTTCCAATTC 116
|||| || | ||| |||||||||| || || |||||| || ||||||||||||||||
Sbjct 82 CTCT-CT-T-CTCGTCTTCCTCGATTTCATCAGCCAGCTACCT-CTTCGTTTTCCAATTC 137
Query 117 TGGGTTTCGATTCTTCCAATCTAACCA--TC-TCTTCTCTTCACAGTCTGGTTCACTCAT 173
||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 138 TGGGTTTCGATTCTTCCAATCTAACCATCTCTTCTTCTCTTCACAGTCTGGTTCACTCAT 197
Query 174 GGAAGTGTTTAAAGCAGCTTTTTCAGAAGCGTCTAATTCTTGTGATAGGATTGCGATTAA 233
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 198 GGAAGTGTTTAAAGCAGCTTTTTCAGAAGGGTCTAATTCTTGTGATAGGATTGCGATTAA 257
Query 234 AGCCGATGGAAAGAGTTACTCTTATGGCCAGCTAACATCGTCTGCTTTGAGGATATCTAA 293
||| |||||||| ||||||||||||||||||||||| || ||||||||||| ||||||||
Sbjct 258 AGCAGATGGAAACAGTTACTCTTATGGCCAGCTAACGTCCTCTGCTTTGAGAATATCTAA 317
Query 294 ATTGTTCTTAAAAGATGATACGACAAATGGAGGTCAAGAAACTAAGAAGTATGAAGGGTT 353
|||||||| || || ||||| |||||||||||| ||||| |||||||||||||||||
Sbjct 318 ATTGTTCTCCAATGAAGATACTACAAATGGAGGT---GAAACAAAGAAGTATGAAGGGTT 374
Query 354 TGGTAGTCTAAAAGGAGCTAGAATCGGAATTGTGGCAAAACCTTCAGCTGAGTTTGTTGC 413
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 375 TGGTAGTCTTAAAGGAGCTAGAATTGGAATTGTGGCAAAACCTTCAGCTGAGTTTGTTGC 434
Query 414 AGGAGTCCTGGGGACATGGTTTAGCGGTGGTGTAGCGGTTCCACTTGCACTCAGCTATCC 473
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 435 AGGAGTTCTGGGAACATGGTTTAGCGGTGGTGTAGCGGTTCCACTTGCACTCAGCTATCC 494
Query 474 TGAGGCTGAACTCTTACATGTCATGAATGATTCGGATATATCTCTGTTATTGAGCACAGA 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 495 TGAGGCTGAACTCTTACATGTCATGAATGATTCGGATATATCTCTGTTATTGAGCACAGA 554
Query 534 GGACCATAGTGAAACTATGAAAACCATCGCAGCAAAGAGTGGTGCTCGATTTCATCTTAT 593
|||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 555 GGACCACAGTGAAACTATGAAAACTATCGCAGCAAAGAGTGGTGCTCAATTTCATCTTAT 614
Query 594 TCCTCCTGTTGTTAACTCAACTTCGGAAACTGTTGCTTGCAATCAGTTTCAGGATGACAG 653
|||||||||||| | |||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 615 TCCTCCTGTTGTCACCTCAACTTCGGAAACTGTTGCTCGCAATCAGTTTCAGGATGATAG 674
Query 654 TTTTGAAGCAGAAGGAAAGTTTCTAGATGATCCAGCATTGATCGTCTACACTAGTGGTAC 713
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 675 TTTTGAAGCAGAAGGAAAGTTTCTAGATGATCCAGCATTGATTGTCTACACTAGTGGTAC 734
Query 714 AACTGGTAAGCCAAAAGGAGTTGTTCATACTCACAACAGCATCAATTCCCAGGTTAGAAT 773
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 735 AACTGGTAAGCCAAAAGGAGTTGTCCATACCCACAACAGCATCAATTCCCAGGTTAGAAT 794
Query 774 GCTCACTGAAGCTTGGGAGTACACATCTGCTGATCATTTTCTCCACTGCCTCCCACTACA 833
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 795 GCTCACTGAAGCTTGGGAGTACACATCTGCTGATCATTTTATCCACTGCCTCCCACTACA 854
Query 834 TCATGTTCATGGGCTTTTCAACGCTTTATTTGCTCCTCTTTACGCACGGTCTTTGGTGGA 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 855 TCATGTTCATGGGCTTTTCAACGCTTTATTTGCTCCTCTTTACGCACGGTCTTTGGTGGA 914
Query 894 GTTTTTGCCCAAATTTAGTGTTAGTGGAATCTGGCGTAGATGGCGTGAATCATATCCGGT 953
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 915 GTTTTTGCCCAAATTTAGTGTTAGTGGAATCTGGCGTAGATGGCGTGAATCATATCCACA 974
Query 954 GAATGATGA-AAAAACCAACGACTCCATAACTGTATTTACTGGAGTTCCAACCATGTACA 1012
||||||||| |||||| |||||| | ||||||||||| |||||||||||||||||||| |
Sbjct 975 GAATGATGAGAAAAAC-AACGACGCTATAACTGTATTCACTGGAGTTCCAACCATGTATA 1033
Query 1013 CTCGGTTGATACAAGGTTATGAAGCAATGGATAAAGAGATGCAGGACTCGAGCGCTTTTG 1072
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1034 CTCGGTTGATACAAGGTTATGAAGCAATGGATAAAGAGATGCAGGATTCGAGCGCTTTTG 1093
Query 1073 CTGCACGGAAGCTTCGCCTAATGATGTCTGGCTCCTCTGCTCTCCCTCGACCTGTCATGC 1132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1094 CTGCACGGAAGCTTCGCCTAATGATGTCTGGCTCCTCTGCTCTCCCTCGACCTGTCATGC 1153
Query 1133 ATCAATGGGAAAGTATCACAGGTCATCGTCTTTTGGAAAGATATGGCATGACTGAGTTTG 1192
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1154 ATCAATGGGAAAGTATCACAGGTCATCGTCTTTTGGAGAGATATGGCATGACTGAGTTTG 1213
Query 1193 TAATGGCAATGTCAAACCCCTTACGGGGTGCACGAAATGCAGGTACTGTCGGCAAACCGC 1252
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1214 TAATGGCAATGTCAAACCCCTTACGGGGTGCACGAAAGGCAGGTACTGTCGGCAAACCGC 1273
Query 1253 TTCCTGGTGTGGAGGCTAAAATAAAAGAAGATGAAAATGACGCAAATGGAGTGGGTGAGA 1312
|||||||||||||||||| ||| ||||||||||| ||||| ||||||||||||| ||||
Sbjct 1274 TTCCTGGTGTGGAGGCTATAATTAAAGAAGATGAGAATGATTCAAATGGAGTGGGCGAGA 1333
Query 1313 TATGTGTTAAAAGCCCATCTTTGTTCAAGGAGTACTGGAATCTTCCAGAGGTGACTAAAG 1372
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1334 TTTGTGTTAAAAGCCCATCTTTGTTCAAGGAGTACTGGAATCTTCCAGAAGTGACTAAAG 1393
Query 1373 AATCATTTACGGAAGATGGATACTTCAAGACGGGAGATGCTGGAAGAGTGGATGAGGATG 1432
||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||
Sbjct 1394 AATCATTTACGGAAGATGGATACTTTAAGACAGGAGATGCTGGTAGAGTGGATGAGGATG 1453
Query 1433 GATATTACGTGATTCTAGGACGTAATAGCGCTGACATTATGAAGGTTGGAGGATACAAGT 1492
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1454 GATATTACGTGATTCTTGGACGGAATAGCGCTGACATTATGAAGGTTGGAGGATACAAGT 1513
Query 1493 TATCTGCCTTAGAAATCGAATCAACCCTTCTCGAGCACCCTACTGTTGCAGAATGTTGCG 1552
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1514 TATCTGCCTTAGAAATTGAATCAACCCTTCTCGAGCACCCTACGGTTGCAGAATGTTGCG 1573
Query 1553 TGTTGGGGTTAACAGACAACGACTATGGAGAAGCCGTGACTGCGATAATTATAGCAGAGA 1612
||||||||||||||||||| || ||||||||||| || |||||||||||| |||||||||
Sbjct 1574 TGTTGGGGTTAACAGACAAAGATTATGGAGAAGCTGTTACTGCGATAATTGTAGCAGAGA 1633
Query 1613 GTGCAGCAAAGAAGAGAAGAGAGGATGAGTCAAAACCTGTAATAACCTTAGAAGAACTGT 1672
|||||| ||||| |||||||| |||||||||||||||||||| |||||||||||||| |
Sbjct 1634 GTGCAGTGAAGAAAAGAAGAGAAGATGAGTCAAAACCTGTAATGACCTTAGAAGAACTCT 1693
Query 1673 GCGGTTGGGCTAAAGACAAGCTTGCTCCTTACAAGCTACCAACAAGATTGCTGATATGGG 1732
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1694 GCGGTTGGGCTAAAGACAAGCTTGCTCCTTACAAGCTACCAACACGATTGCTGATATGGG 1753
Query 1733 AGAGCTTGCCTCGCAACGCCATGGGAAAGGTGAACAAAAAAGAGCTAAAGAAATCTCTGG 1792
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1754 AGAGCTTGCCCCGCAACGCCATGGGAAAGGTGAACAAAAAAGAGCTAAAGAAATCTCTTG 1813
Query 1793 AAAATCAAGAATAA 1806
| ||||||||||||
Sbjct 1814 ATAATCAAGAATAA 1827
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74428338730
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5