BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G16180.1
Length=2079
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929433 jgi|Araly1|929433|scaffold_301890.1 2833 0.0
> Ahg929433 jgi|Araly1|929433|scaffold_301890.1
Length=1823
Score = 2833 bits (1534), Expect = 0.0
Identities = 1729/1823 (95%), Gaps = 14/1823 (1%)
Strand=Plus/Plus
Query 131 GAAGCTTGAAAGGTAACAACAATGGAGAACCCTCCGGATCAAACAGAGTCAAAGGAGACT 190
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2 GAAGC-AGAAAGGTAACAACAATGGAGAACCCTCCGGATCAAACAGAGTCAAAGGAGATT 60
Query 191 CTT---CAACAACCCATTACAAGAAGAAGAACAAAGGGTGGTCTTCTCACTATGCCCTTC 247
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTTCAACAACAACCCATTAGAAGAAGAAGAACAAAGGGTGGTCTTCTCACTATGCCCTTC 120
Query 248 ATCATTGCAAACGAGGGGTTCGAGAAAGTGGCGAGCTATGGATTATTACAGAACATGATT 307
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 121 ATCATTGCAAACGAGGGGTTCGAGAAAGTGGCGAGCTATGGATTGTTACAGAACATGATT 180
Query 308 CTTTATCTGATGAGTGATTACAGATTGGGACTTGTTAAAGGACAAACTGTCTTGTTCATG 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTTTATCTGATGAGTGATTACAGATTGGGACTTGTTAAAGGACAAACTGTCTTGTTCATG 240
Query 368 TGGGTTGCTGCTACTAATTTCATGCCTCTCGTTGGAGCTTTTCTCTCAGATTCATATTTG 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TGGGTTGCTGCTACTAATTTCATGCCTCTCGTTGGAGCTTTTCTCTCAGATTCATATTTG 300
Query 428 GGTCGCTTTCTCACCATTGTCATTGCTTCTCTCTCCAGTCTCCTGGGGATGGTGGTTCTA 487
||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 301 GGTCGCTTTCTCACCATTGCCATTGCTTCTCTCTCCAGTCTCCTGGGCATGGTGGTTCTA 360
Query 488 TGGCTAACGGCGATGTTGCCGCAAGTAAAACCATCACCGTGTGTAGCAACAGCCGGAACC 547
||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||
Sbjct 361 TGGCTAACGGCGATGTTACCGCAAGTGAAGCCATCACCGTGTGTAGCAACAGCCGGAACC 420
Query 548 AACTGCAGTTCCGCGACATCTTCTCAATTGGCTCTCTTGTATACCGCATTCGCA-TTAAT 606
| ||||||||| |||||||||| ||||||||||| |||||| ||||||||||| ||| |
Sbjct 421 AGTTGCAGTTCCACGACATCTTCCCAATTGGCTCTTTTGTATTCCGCATTCGCACTTA-T 479
Query 607 ATCGATTGGATCAGGAGGAATCAGGCCATGTTCTTTAGCCTTTGGTGCTGATCAATTGGA 666
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 ATCGATTGGATCAGGCGGAATCAGGCCATGTTCTTTAGCCTTTGGTGCTGATCAATTGGA 539
Query 667 CAACAAAGAGAATCCTAAGAACGAGAGAGTTCTTGAGAGTTTCTTTGGTTGGTACTACGC 726
||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||
Sbjct 540 CAACAAAGAGAATCCTAAGAACGAGAGAGTTCTTGAGAGCTTCTTCGGATGGTACTACGC 599
Query 727 TTCTTCATCAGTTGCTGTCTTGATCGCTTTCACCGTCATTGTTTACATTCAAGATCATCT 786
||||||||| || ||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 600 TTCTTCATCGGTAGCTGTCTTGATTGCTTTCACTGTCATTGTTTACATTCAAGATCATCT 659
Query 787 AGGATGGAAAATCGGGTTTGGAATACCCGCGATTCTCATGCTGCTCGCGGGTTTCTTGTT 846
|||||||||||||||||||||||| ||||| |||||||||||| |||| |||||||||||
Sbjct 660 AGGATGGAAAATCGGGTTTGGAATCCCCGCCATTCTCATGCTGTTCGCTGGTTTCTTGTT 719
Query 847 TGTTTTCGCGTCTCCTCTCTACGTTAAGCGCGATGTGAGCAAGAGTCTGTTCACTGGTTT 906
|||||| || ||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 720 TGTTTTGGCCTCTCCTCTCTACGTTAAACGCAATGTGAGCAAGAGTCTGTTCACTGGTTT 779
Query 907 AGCTCAAGTGGTTGCTGCAGCTTACGTGAAGAGAAACTTAACTTTGCCGGATCATCATGA 966
|||||||||||||||||||||||||||||| | ||||||||||| ||||||| ||||||
Sbjct 780 AGCTCAAGTGGTTGCTGCAGCTTACGTGAACCGGAACTTAACTTTACCGGATCCTCATGA 839
Query 967 CTCCAGAGATTGTTATTACCGTTTGAAAGATTCTGAACTCAAAGCTCCAAGTGACAAATT 1026
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 840 CTCCAGAGATTGTTATTATCGTTTGAAAGATTCTGAACTCAAAGCTCCAAGTGACAAATT 899
Query 1027 GAGGTTTTTAAACAAAGCTTGTGCCATAAGTAACCGCGATGAAGACCTTGGTTCTGATGG 1086
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 900 GAGGTTTCTAAACAAAGCTTGTGCCATAAGCAACCGCGATGAAGACCTTGGTTCTGATGG 959
Query 1087 TTTGGCCTTAAACC-AGTGGAGGCTATGCACAACGGACCAAGTTGAGAAACTCAAGGCGT 1145
||||||||||||| | |||||||| |||||||| |||||||| ||| |||||||||| |
Sbjct 960 CTTGGCCTTAAACCCA-TGGAGGCTCTGCACAACAGACCAAGTCGAGGAACTCAAGGCCT 1018
Query 1146 TGGTCAAGGTGATACCGGTATGGTCCACGGGGATAATGATGTCGATAAACGTTAGCCAGA 1205
|||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1019 TGGTAAAAGTGATACCGGTATGGTCCACGGGGATAATGATGTCCATAAACGTTAGCCAGA 1078
Query 1206 ACTCTTTTCAGTTGCTTCAAGCTAAATCAATGGACAGACGTTTAAGCAGCAATTCGACCT 1265
|||| ||||||||||||||||||||||| |||||||||||||| |||||| |||||| ||
Sbjct 1079 ACTCGTTTCAGTTGCTTCAAGCTAAATCGATGGACAGACGTTTGAGCAGCGATTCGAGCT 1138
Query 1266 TCCAAATCCCAGCTGGATCGTTTGGTATGTTCACAATCATAGCCTTAATCTCATGGGTTG 1325
|||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1139 TCCAAATCCCTGCTGGATCGTTCGGTATGTTCACAATCATAGCCTTAATCTCATGGGTCG 1198
Query 1326 TTCTGTACGACCGCGCAATTCTCCCTTTAGCTTCAAAGATCCGAGGCAGACCAGTTAGAG 1385
||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||| |
Sbjct 1199 TTCTGTACGACCGCGCAATCCTCCCTTTAGCTTCAAAAATCCGAGGCAGACCGGTTAGGG 1258
Query 1386 TCAATGTCAAGATTCGAATGGGATTAGGGCTATTCATATCATTCTTAGCAATGGCGGTTT 1445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 TCAATGTCAAGATTCGAATGGGATTAGGGCTATTCATATCATTCTTAGCAATGGCGGTTT 1318
Query 1446 CCGCAACTGTTGAACATTACAGAAGGAAAACCGCGATAAGCCAAGGACTCGCAAACGATG 1505
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1319 CCGCAACTGTTGAGCATTACAGAAGGAAAACTGCGATAAGCCAAGGACTCGCAAACGATG 1378
Query 1506 CCAACTCAACAGTGAGCATCTCAGCAATGTGGCTTGTACCACAGTATGTACTACACGGTT 1565
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1379 CCAACTCAACAGTGAACATCTCAGCAATGTGGCTTGTACCGCAGTATGTACTACACGGTT 1438
Query 1566 TAGCAGAGGCCTTGACCGGGATAGGACAGACCGAGTTTTTCTATACCGAGTTTCCTAAAA 1625
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1439 TAGCAGAGGCCTTAACCGGGATAGGACAGACCGAGTTTTTCTACACCGAGTTTCCTAAAA 1498
Query 1626 GCATGTCGAGTATCGCAGCTTCGT-TGTTCGGTCTAGGAATGGCAGTGGCTAATATCTTG 1684
|||||||||||||||| ||||| | |||| |||||||||||||||||||||||||| |||
Sbjct 1499 GCATGTCGAGTATCGCTGCTTC-TCTGTTTGGTCTAGGAATGGCAGTGGCTAATATATTG 1557
Query 1685 GCTAGTGTGATCCTAAATGCGGTAAAGAATAGCTCAAAGCAGGGCAATGTGAGCTGGATT 1744
|||||||||||||||||||| || ||||||||||||||| ||||||| || |||||||||
Sbjct 1558 GCTAGTGTGATCCTAAATGCTGTCAAGAATAGCTCAAAGAAGGGCAACGTAAGCTGGATT 1617
Query 1745 GAAGATAACATCAACAAGGGTCACTATGACTATTACTATTGGGTTTTAGCGATCTTGAGC 1804
|||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 1618 GAAGATAATATCAACAAGGGTCACTACGACTATTACTATTGGATTTTAGCGATCTTGAGC 1677
Query 1805 TTCGTTAATGTCATCTACTACGTTGTGTGTAGCTGGTCCTATGGTCCTACGGTGGATCAG 1864
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1678 TTCGTTAATGTCATCTACTACGTTGTGTGTAGCTGGTCTTATGGTCCTACGGTGGATCAG 1737
Query 1865 GTGAGGAATGATAAGGTTAATGGTATGAGAAAAGAAGAAGAGGAAGTTATTAAA-T-T-A 1921
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| | | |
Sbjct 1738 GTGAGGAATGATAAGGTTAATGGTATGAGAGAAGAAGAAGAGGAAGTTATTAAAATATTA 1797
Query 1922 AACTAAGACCAATTGGTTGATCA 1944
||||| || ||||||||||||||
Sbjct 1798 AACTA-GATCAATTGGTTGATCA 1819
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78199272985
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5