BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G16190.1
Length=826
Score E
Sequences producing significant alignments: (Bits) Value
Ahg904559 jgi|Araly1|904559|Al_scaffold_0003_1687 815 0.0
> Ahg904559 jgi|Araly1|904559|Al_scaffold_0003_1687
Length=591
Score = 815 bits (441), Expect = 0.0
Identities = 543/593 (92%), Gaps = 4/593 (1%)
Strand=Plus/Plus
Query 54 ATGGCCGAGAGATGGAGGAACACGGCTCTACTCGTCATCGACATGCAGAACGATTTCATA 113
||||| ||||||||||||||||||||||||||||| ||||| |||||||| |||||||||
Sbjct 1 ATGGCGGAGAGATGGAGGAACACGGCTCTACTCGTTATCGATATGCAGAAGGATTTCATA 60
Query 114 GAGGAAGGTGCTGTGACGCAAGTGAAAGGAGGAAAATCTATAGTTCCTAATGTTATCAGA 173
|||||| || | ||| | |||||||||||||||||||||||||||||||||||| |||
Sbjct 61 GAGGAAAGTTCAATGATTCGAGTGAAAGGAGGAAAATCTATAGTTCCTAATGTTATTAGA 120
Query 174 GTCGTCGAACTCGCGAGGCAGCGTGGTATTCTCGTAATTTGGGTTGTTCGAGAACATGAT 233
||||| |||||||||||||||| ||||||||||||||||||||||||| | |||||||||
Sbjct 121 GTCGTTGAACTCGCGAGGCAGCATGGTATTCTCGTAATTTGGGTTGTTAGGGAACATGAT 180
Query 234 CGTCAAGGAAGAGATGTTGA-ATTATTCAGGCGCCATAACTACAGTTCTGAGAAAGTCGG 292
| || ||||||||||||||| | |||||||||| ||| |||||| |||||| |||||||
Sbjct 181 CCTCGAGGAAGAGATGTTGAGA-TATTCAGGCGTCATCACTACAATTCTGATCAAGTCGG 239
Query 293 GCCAGTTATTAAAGGCACCGTAGGAGCAGAATTGGTTGATGGATTGATGATCAACGAAGA 352
||| | |||||||||| |||||||||||||| |||||||||||||| ||||| |||||
Sbjct 240 ACCAACTGTTAAAGGCACTGTAGGAGCAGAATTAGTTGATGGATTGATCATCAAGGAAGA 299
Query 353 AGATGACTATAAGATTGTGAAAACTCGTTTCAGTG-CTTTCTTTAGTACCAATCTTCATT 411
||| |||||||||||||||||||||||||| || | |||| |||||||||||||||||||
Sbjct 300 AGAAGACTATAAGATTGTGAAAACTCGTTTTAGCGCCTTT-TTTAGTACCAATCTTCATT 358
Query 412 CCTTCTTGCAAACTTCAGGGGTTACCAAGTTAGTGATTGCTGGTGTGCAAACGCCGAACT 471
|||||||||||||||| ||||||||||| ||||| ||||||||||| ||||||||||| |
Sbjct 359 CCTTCTTGCAAACTTCTGGGGTTACCAATTTAGTCATTGCTGGTGTTCAAACGCCGAATT 418
Query 472 GTATCCGGCAAACGGTGTTTGATGCAGTGGCGCTGGATTATCCCAATGTGACTGTTATTA 531
|||||||||||||||| ||||||||||||| |||||||||||| |||||||| |||||||
Sbjct 419 GTATCCGGCAAACGGTTTTTGATGCAGTGGAGCTGGATTATCCAAATGTGACAGTTATTA 478
Query 532 CAGATGCCACAGCTGCTGCAACACCAGAGATCCATACTGCGAATATTCTTGACATGAAGA 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 CAGATGCCACAGCTGCTGCAACACCAGAGATCCATACTGCGAATATTCTTGACATGAAGA 538
Query 592 ATATTGGAGTCAAGACTCCTACATTACACGAGTGGTCCGAAGAACTTGCTTGA 644
|||| ||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 539 ATATAGGAGTCAAGACTCCTACATTACATGAGTGGTCCGAAGAATTTGCTTGA 591
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30536456517
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5