BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G16350.1 Length=1537 Score E Sequences producing significant alignments: (Bits) Value Ahg479087 jgi|Araly1|479087|fgenesh2_kg.3__1788__AT3G16350.1 2037 0.0 > Ahg479087 jgi|Araly1|479087|fgenesh2_kg.3__1788__AT3G16350.1 Length=1472 Score = 2037 bits (1103), Expect = 0.0 Identities = 1384/1510 (92%), Gaps = 58/1510 (4%) Strand=Plus/Plus Query 30 TTGTGTATACACAAATCTTA--TTCAACGAATCATTTATCACCAAAAGGTTCTCTC-TTT 86 |||||||||| | ||||||| ||| ||||| ||||||| |||||||||||||||| ||| Sbjct 1 TTGTGTATACGCTAATCTTATTTTC-ACGAAGCATTTATTACCAAAAGGTTCTCTCTTTT 59 Query 87 TTTGTTTGTTTCTGTCTTGTGTGAATGACTCGTCGGTGTTCGCATTGTAGCAACAATGGG 146 ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 60 TTTGTTTGTTTGTGTCTTGTGTGAATGACTCGTCGGTGTTCGCATTGTAGTAACAATGGG 119 Query 147 CACAATTCACGCACGTGTCCAACGCgtggtggtggcacgtgcggtggaagtggcggagga 206 |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 120 CACAATTCACGCACGTGTCCAACGCGTGGTGGTGGCACGTGCGGTGGAAGTGGC------ 173 Query 207 ggaggaggtggtggtggaggagggtctggtTCCTCCTCCGCCGTGAAGTTATTTGGTGTG 266 |||||| ||| ||||| ||| ||||||||||||||||||||||||| || ||| Sbjct 174 GGAGGA------GGT---GGAGGTTCTTGTTCCTCCTCCGCCGTGAAGTTATTCGGCGTG 224 Query 267 AGGTTAACGGATGGCTCGATTATTAAAAAGAGTGCGAGTATGGGTAATCTCTCGGCATTG 326 |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| Sbjct 225 AGGTTAACGGATGGGTCGATTATTAAAAAGAGTGCGAGTATGGGTAATCTCTCTGCATTG 284 Query 327 GCTGTTGCGGCGGCGGCGGCAACGCACCACCGTTTATCTCCGTCGTCTCCTCTGGCGACG 386 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 285 GCTGTTGCGGCGGCGGCGGCAACGCACCACCGTTTATCTCCGTCGTCTCCTCTAGCGACG 344 Query 387 TCAAATCTTAATGATTCGCCGTTATCGGATCATGCCCGATACTCTAATTTGCATCATAAT 446 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 345 TCAAATCTCAATGATTCGCCGTTATCGGATCATGCCCGATACTCTAATTTGCATCATAAT 404 Query 447 GAAGGGTATTTATCTGATGATCCTGCTCATGGTTCTGGGTCTAGTCACCGTCGTGGTGAG 506 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 405 GAAGGGTATTTATCTGATGATCCTGCTCATGGTTCTGGGTCTAGTCACCGTCGTGGAGAG 464 Query 507 AGGAAGAGAGGTGTTCCTTGGACTGAAGAGGAACATAGACTATTCTTAGTCGGTCTTCAG 566 |||||||||||||||||||||||||| |||||||| || ||||||||||| ||||||||| Sbjct 465 AGGAAGAGAGGTGTTCCTTGGACTGAGGAGGAACACAGGCTATTCTTAGTTGGTCTTCAG 524 Query 567 AAACTCGGGAAAGGAGATTGGCGCGGTATTTCGAGAAACTATGTAACGTCAAGAACTCCT 626 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 525 AAACTCGGGAAAGGAGATTGGCGCGGTATTTCGAGAAACTATGTAACTTCAAGAACTCCT 584 Query 627 ACACAAGTGGCTAGTCATGCTCAAAAGTATTTTATTCGACATACTAGTTCAAGCCGCAGG 686 ||||||||||||||||||||||| |||||||| ||||| ||||||||||| ||||| ||| Sbjct 585 ACACAAGTGGCTAGTCATGCTCAGAAGTATTTCATTCGCCATACTAGTTCCAGCCGTAGG 644 Query 687 AAAAGACGGTCTAGCCTCTTCGACATGGTTACAGATGAGATGGTAACCGATTCATCGCCA 746 ||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||| Sbjct 645 AAAAGACGGTCTAGCCTATTCGACATGGTTACCGATGAGATGGTAACTGATTCATCGCCA 704 Query 747 ACACAGGA--AGAG-CA---GACCTTAAACGGTTCCTCTCCAAGCAAGGAACCTGAAAAG 800 || | || |||| || |||||||||| || |||||||||||||||||||||||| Sbjct 705 ACGGAAGACCAGAGTCATCAGACCTTAAACCATTTCTCTCCAAGCAAGGAACCTGAAAAC 764 Query 801 AAAAGCTACCTTCCTTCACTTGAGCTCTCACTCAATAATACCACAGAAGCTGAAGAGGTC 860 |||| |||||||||||||||||||||||| |||||||||||||| ||| |||||| |||| Sbjct 765 AAAATCTACCTTCCTTCACTTGAGCTCTCTCTCAATAATACCACGGAATCTGAAGTGGTC 824 Query 861 GTAGCCACGGCGCCACGACAGGAAAAATCTCAAGAAGCTATAGAACCATCAAATGGTGTT 920 |||||||||||||||| |||||||||| || ||||| ||||||| |||||||| || ||| Sbjct 825 GTAGCCACGGCGCCACCACAGGAAAAAACTGAAGAAACTATAGAGCCATCAAACGGGGTT 884 Query 921 TCACCAATGCTAGTCCCGGGTGGCTTCTTTCCTCCTTGTTTTCCAGTGACTTACACGATT 980 ||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||| Sbjct 885 TCACCAATGGTAGTCCCGGGCGGCTTCTTTCCTCCTTGTTTTCCAGTCACTTACACGATT 944 Query 981 TGGCTCCCTGCG--T-C-ACTTCAC-----GGAACAGAACATGCCTTA-AACGCTGAGAC 1030 ||||| |||||| | | ||||||| || ||||||||||||||| || |||||||| Sbjct 945 TGGCTACCTGCGACTTCCACTTCACTTCATGGTACAGAACATGCCTTAGAA-GCTGAGAC 1003 Query 1031 TTCTTCTCAGCAGCATCAGGTCCTAAAACCAAAACCTGGATTTGCTAAAGAACGTGTGAA 1090 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1004 TTCTTCTCAGCAGCATCAGGTCCTAAAACCAAAACCTGGATTTGCTAAAGAACGTGTGAA 1063 Query 1091 CATGGACGAGTTGGTCGGTATGTCTCAGCTTAGCATAGGAATGGCGACAAGACACGAAAC 1150 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1064 CATGGACGAGCTGGTCGGTATGTCTCAGCTTAGCATAGGAATGGCGACAAGACACGAAAC 1123 Query 1151 CGAAACTTCCCCTTCCCCGCTATCTTTGAGACTAGAGCCCTCAAGGCCATCAGCGTTTCA 1210 |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| Sbjct 1124 CGAAACTTCCCCTTCCCCTCTATCTTTGAAACTAGAGCCCTCAAGGCCATCAGCGTTTCA 1183 Query 1211 CTCGAATGGCTCGGTTAATGGTGCAGATTTGAGTAAAGGCAACAGCGCGATTCAGGCTAT 1270 ||| || |||||||||||||| ||||||||||||||||||||||||||||||||||| || Sbjct 1184 CTCAAACGGCTCGGTTAATGGCGCAGATTTGAGTAAAGGCAACAGCGCGATTCAGGCGAT 1243 Query 1271 CTAAAAAATCTTTGTTATTGTGTTAAAGAATGAAGAAGGAAGACCCTGACCGGATTAAAC 1330 || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1244 CTGAAAAATCTTTGTTATTGTGTTAAAGAATGAAGAAGGAAGTCCCTGACCGGATTAAAT 1303 Query 1331 CAGAGGATGTTCCTGGTTTAGGACGAAACAAACCAAGCCATAAGCCATTAGAGAGAACAA 1390 || |||||||||||||||||||||||||||| ||||||||||||||||||||||||| || Sbjct 1304 CAAAGGATGTTCCTGGTTTAGGACGAAACAATCCAAGCCATAAGCCATTAGAGAGAA-AA 1362 Query 1391 TTACTTACAAAGGaaaaaaaaaCAGAGCAAACTGTAACAA-AGACTTACCAAACAGTCAA 1449 | | || |||||||||||||||||| ||||||||||||||||||| Sbjct 1363 --A---A-AA------------CAGAGCAAACTGTAACAATAGACTTACCAAACAGTCAA 1404 Query 1450 AAACACATTTCTCAGCATCACGTCATACTTACATAAGATAAGCGTAACTTACAATTTTAC 1509 | | |||||||||||||||||||||||||||||||| ||||||||| |||||||||||| Sbjct 1405 A--CGCATTTCTCAGCATCACGTCATACTTACATAAGCTAAGCGTAATTTACAATTTTAC 1462 Query 1510 CCTTCATTTT 1519 ||||||||| Sbjct 1463 TCTTCATTTT 1472 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57554360195 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5