BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G16360.2 Length=616 Score E Sequences producing significant alignments: (Bits) Value Ahg479088 jgi|Araly1|479088|fgenesh2_kg.3__1789__AT3G16360.1 616 8e-176 > Ahg479088 jgi|Araly1|479088|fgenesh2_kg.3__1789__AT3G16360.1 Length=413 Score = 616 bits (333), Expect = 8e-176 Identities = 343/348 (99%), Gaps = 0/348 (0%) Strand=Plus/Plus Query 136 CAGGGATATCTCGACGAACAATTCATGGAGTTAGAAGAGCTCCAAGATGATGCAAACCCT 195 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 30 CAGGGATATCTCGACGAACAATTCATGGAGCTAGAAGAGCTCCAAGATGATGCAAACCCT 89 Query 196 AATTTTGTTGAAGAAGTTTCCGCATTATACTTCAAAGATTCAGCTCGGTTAATCAATAAC 255 |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| Sbjct 90 AATTTTGTTGAAGAAGTTTCCGCATTGTACTTCAAAGATTCAGCTCGATTAATCAATAAC 149 Query 256 ATTGACCAAGCTTTGGAAAGAGGATCATTTGATTTCAATCGGCTGGATAGTTACATGCAT 315 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 150 ATTGACCAAGCTTTGGAAAGAGGATCATTTGATTTCAATCGGCTGGATAGTTACATGCAT 209 Query 316 CAGTTTAAGGGAAGCAGCACGAGCATTGGGGCAAGTAAAGTGAAAGCTGAATGCACTACG 375 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 210 CAGTTTAAGGGAAGCAGCACGAGCATTGGGGCAAGTAAAGTGAAAGCTGAATGCACTACG 269 Query 376 TTTAGGGAATACTGCAGAGCTGGAAATGCGGAAGGATGCTTGAGGACTTTCCAGCAACTG 435 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 270 TTTAGGGAATACTGCAGAGCTGGAAATGCTGAAGGATGCTTGAGGACTTTCCAGCAACTG 329 Query 436 AAGAAAGAACACTCAACGTTGAGAAAGAAGCTTGAACATTATTTCCAG 483 ||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 330 AAGAAAGAACACTCAACGTTGCGAAAGAAGCTTGAACATTATTTCCAG 377 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 22530643947 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5