BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G16360.2

Length=616
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg479088 jgi|Araly1|479088|fgenesh2_kg.3__1789__AT3G16360.1         616    8e-176


> Ahg479088 jgi|Araly1|479088|fgenesh2_kg.3__1789__AT3G16360.1
Length=413

 Score =  616 bits (333),  Expect = 8e-176
 Identities = 343/348 (99%), Gaps = 0/348 (0%)
 Strand=Plus/Plus

Query  136  CAGGGATATCTCGACGAACAATTCATGGAGTTAGAAGAGCTCCAAGATGATGCAAACCCT  195
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  30   CAGGGATATCTCGACGAACAATTCATGGAGCTAGAAGAGCTCCAAGATGATGCAAACCCT  89

Query  196  AATTTTGTTGAAGAAGTTTCCGCATTATACTTCAAAGATTCAGCTCGGTTAATCAATAAC  255
            |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct  90   AATTTTGTTGAAGAAGTTTCCGCATTGTACTTCAAAGATTCAGCTCGATTAATCAATAAC  149

Query  256  ATTGACCAAGCTTTGGAAAGAGGATCATTTGATTTCAATCGGCTGGATAGTTACATGCAT  315
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  150  ATTGACCAAGCTTTGGAAAGAGGATCATTTGATTTCAATCGGCTGGATAGTTACATGCAT  209

Query  316  CAGTTTAAGGGAAGCAGCACGAGCATTGGGGCAAGTAAAGTGAAAGCTGAATGCACTACG  375
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  210  CAGTTTAAGGGAAGCAGCACGAGCATTGGGGCAAGTAAAGTGAAAGCTGAATGCACTACG  269

Query  376  TTTAGGGAATACTGCAGAGCTGGAAATGCGGAAGGATGCTTGAGGACTTTCCAGCAACTG  435
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  270  TTTAGGGAATACTGCAGAGCTGGAAATGCTGAAGGATGCTTGAGGACTTTCCAGCAACTG  329

Query  436  AAGAAAGAACACTCAACGTTGAGAAAGAAGCTTGAACATTATTTCCAG  483
            ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  330  AAGAAAGAACACTCAACGTTGCGAAAGAAGCTTGAACATTATTTCCAG  377



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22530643947


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5