BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G16420.1
Length=1274
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479097 jgi|Araly1|479097|fgenesh2_kg.3__1798__AT3G16420.1 1522 0.0
Ahg929469 jgi|Araly1|929469|scaffold_301926.1 819 0.0
Ahg479101 jgi|Araly1|479101|fgenesh2_kg.3__1802__AT3G16440.1 446 2e-124
> Ahg479097 jgi|Araly1|479097|fgenesh2_kg.3__1798__AT3G16420.1
Length=1085
Score = 1522 bits (824), Expect = 0.0
Identities = 1006/1093 (92%), Gaps = 16/1093 (1%)
Strand=Plus/Plus
Query 1 AATATAAATAAACATACAATTCACTTTAATTGATCATAGCACCGATAACAATCTACTCTC 60
|||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 1 AATATAAATACACATACAATTCACTTAAATTGATCATAGCACCGATCACAATCTACTCTC 60
Query 61 TTTAAAAGAAATTCGTAAGTACT-ATCAAGAAGCAGAAGATGGCCCAAAAGGTGGAAGCA 119
|||| ||||||||||||||| | |||||||||| ||||||||||||||||||||||||
Sbjct 61 TTTAGAAGAAATTCGTAAGT-TTGGTCAAGAAGCAAAAGATGGCCCAAAAGGTGGAAGCA 119
Query 120 CAAGGAGGGAAAGGAGCCAACCTATGGGACGATGGAT-CGACACATGACGCCGTGACCAA 178
|||||||||||||||| ||||| |||||||||||||| || ||||||||| ||||||||
Sbjct 120 CAAGGAGGGAAAGGAGGCAACCAATGGGACGATGGATCCG-TACATGACGCTGTGACCAA 178
Query 179 GATTCAGCTCGCAGCAGGCATAGA--CGGAATTCAATATGTTCAGTTTGATTATGTCAAG 236
||||||| ||| |||||| | || ||| |||||||| |||||||||||||||||||||
Sbjct 179 GATTCAGGTCGGAGCAGG--TGGACTCGGCATTCAATACGTTCAGTTTGATTATGTCAAG 236
Query 237 AACGGACAACCCGAACAAGCTCCTCTTCGTGGTACCAAAGGCCGTGTTCTCCCAGCTGAT 296
||||||||| ||||||||||||||||||| |||| ||||||||||||| | |||||||||
Sbjct 237 AACGGACAAACCGAACAAGCTCCTCTTCGCGGTATCAAAGGCCGTGTTATGCCAGCTGAT 296
Query 297 CCGTTTGTGATTAACCATCCAGACGAACATCTAGTTTCTGTAGAAGGTTGGTATAGCCCT 356
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 297 CCGTTTGTGATTAACCATCCAGAGGAACATCTAGTTTCTGTAGAAGGTTGGTATAGCCCC 356
Query 357 GAAGGTATCATTCAAGGAATTAAGTTCATCTCCAACAAGAAGACTTCTGATGTCATTGGA 416
|||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 357 GAAGGTGTCATTCAAGGGCTTAAGTTCATCTCCAACAAGAAGACTTCTGATGTAATTGGA 416
Query 417 TCCGATGAGGGTACT-CACTTCACTCTAC-AAGTTAAAGACAAGAAGATCATTGGCTTTC 474
| ||| || |||||| || |||||||| | ||||| ||||||||||||||||||||||||
Sbjct 417 TACGAAGATGGTACTCCA-TTCACTCT-CAAAGTTCAAGACAAGAAGATCATTGGCTTTC 474
Query 475 ATGGGTCTGCCGGGGGCAATCTTAATTCTCTTGGGGCTTACTTTGCTCCGTTGACTACTA 534
||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 475 ATGGGTCTGCCGGAGACAATCTTAATTCTCTTGGGGCTTACTTTGCTCCGTCGACTAGTA 534
Query 535 CAACTCCGTTGACTCCTGCCAAGCAGCTAACGGCATTTGGTAGTGATGACGGAACTG-TA 593
||||||||||||||||||||||||||||| | ||| ||||||||||||| ||| ||| |
Sbjct 535 CAACTCCGTTGACTCCTGCCAAGCAGCTACCCGCACTTGGTAGTGATGATGGAGCTGCT- 593
Query 594 TGGGATGATGGTGCTTACGTTGGGGTTAAGAAGGTGTACGTTGGACAAGCCCAAGATGGA 653
|||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 594 TGGGATGATGGTTCTTACGTTGGTGTTAAGAAGGTGTACGTAGGACAAGCCCAAGATGGT 653
Query 654 ATCTCAGCTGTTAAGTTTGTGTACGACAAAAGCCCTGAGGAGGTCACAGGAGAAGAACAT 713
|||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 654 ATCTCAGCCGTTAAGTTTGTGTACGACAAAAGTCCTGAGGAGGTCGTAGGAGAAGAACAT 713
Query 714 GGAAAGAGTACTCTACTCGGATTCGAAGAGTTCGTACTTGACTATCCAAGTGAATACATC 773
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 714 GGAAAGAGTACTCTACTCGGATTCGAAGAGTTAGTACTTGACTATCCAAGTGAATACATC 773
Query 774 ACCGCAGTCGATGGCACTTATGATAAAATCTTTGGGAGTGATGGCTCAGTCATAACTATG 833
||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 774 ACCGCAGTCGAAGGCACCTACGATAAAATCTTTGGGAGTGATGGCTCAGTCATAACTATG 833
Query 834 CTCAGGTTCAAGACTAATAAGCAAACGTCTCCTCCCTTTGGACTTGAAGCTGGCACAGTC 893
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 834 CTTAGGTTCAAGACTAATAAGCAAACGTCTCCTCCCTTTGGACTTGAAGCTGGCACAGCC 893
Query 894 TTCGAACTCAAAGAGGAAGGCCACAAGATCGTTGGTTTCCATGGAAGAGCC-GATGTTCT 952
||||||||||||||||| |||||||| |||||||| ||||||||||||||| | || |||
Sbjct 894 TTCGAACTCAAAGAGGAGGGCCACAAAATCGTTGGCTTCCATGGAAGAGCCAG-TGATCT 952
Query 953 GCTCCACAAAATTGGAGTCCATGTTCGTCCTTTATCCAACTGATGATGGAGCTCTTTATC 1012
||| |||||| ||||||||||||| ||||| | |||||||||| |||||| ||||||||
Sbjct 953 GCTTCACAAATTTGGAGTCCATGTCCGTCCCGTCTCCAACTGATAATGGAGATCTTTATC 1012
Query 1013 CTTGATTCCATGCATCTAATAAGTTATCAAATCTATCTTCTAAATTTCTCATATGAGGTC 1072
|||| || |||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 1013 TTTGAATCTATGCATCTAATAAGTTATCAAATCTATCTTCTAAATTTGTCATTTGAGGTC 1072
Query 1073 TCTTCATGCCTCT 1085
|||||||||||||
Sbjct 1073 TCTTCATGCCTCT 1085
> Ahg929469 jgi|Araly1|929469|scaffold_301926.1
Length=937
Score = 819 bits (443), Expect = 0.0
Identities = 781/941 (83%), Gaps = 36/941 (4%)
Strand=Plus/Plus
Query 94 AGAA-GATGGCCCAAAAGGTGGAAGCACAAGGAGGGAAAGGAGCCAACCTATGGGACGAT 152
|||| |||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 15 AGAACGATGGCTCAAAAGGTGGAAGCACAAGGAGGGAAAGGAGGCAACCAATGGGACGAT 74
Query 153 GGAT-CGACACATGACGCCGTGACCAAGATTCAGCTCGCAGCAGGCATAGA--CGGAATT 209
|||| || ||||||||| ||||||||||||||| ||| |||||| | || ||| |||
Sbjct 75 GGATCCG-TACATGACGCTGTGACCAAGATTCAGGTCGGAGCAGG--TGGACTCGGCATT 131
Query 210 CAATATGTTCAGTTTGATTATGTCAAGAACGGACAACCCGAACAAGCTCCTCTTCGTGGT 269
||||| |||||||| || |||||||||||||||||| | ||| ||||||||||||| ||
Sbjct 132 CAATACGTTCAGTTCGACTATGTCAAGAACGGACAAACTGAAGAAGCTCCTCTTCGCGGC 191
Query 270 ACCAAAGGCCGT-GTTCTCCCAGCTGATCCGTTTGTGATTAACCATCCAGACGAACATC- 327
| |||||||||| | | || ||||||||||||||||||| ||||||||||| ||||| |
Sbjct 192 ATCAAAGGCCGTAG-TATCGCAGCTGATCCGTTTGTGATCAACCATCCAGAGGAACA-CT 249
Query 328 TAGTTTCTGTAGAAGGTTGGTATAGCCCTGAAGGTATCATTCAAGGAATTAAGTTCATCT 387
| |||||||||||||||||||||| |||||||||| | |||||||| ||||||||| |
Sbjct 250 TGGTTTCTGTAGAAGGTTGGTATAACCCTGAAGGTGTTATTCAAGGGCTTAAGTTCAAAT 309
Query 388 CCAACAAGAAGACTTCTGATGTCATTGGATCCGATGAGGGTACTCACTTCACTCTACAAG 447
| |||||||| ||||||||||||||||||| ||| || |||||||| |||||||| ||||
Sbjct 310 CGAACAAGAAAACTTCTGATGTCATTGGATACGACGATGGTACTCAATTCACTCTCCAAG 369
Query 448 TTAAAGACAAGAAGATCATTGGCTTTCATGGGTCTGCCGGGGGCAATCTTAATTCTCTTG 507
|| ||||||||||||||| |||||||||||||| ||| || | |||||||||||||||||
Sbjct 370 TTCAAGACAAGAAGATCACTGGCTTTCATGGGTTTGCTGGAGACAATCTTAATTCTCTTG 429
Query 508 GGGCTTACTTTGCTCCGTTGACTACTACAACTCCGTTGACTCC-TGCCAAGCAGCTAACG 566
|||||||||||||||||||||||||| || | ||||||| ||| ||||||| |||| |
Sbjct 430 GGGCTTACTTTGCTCCGTTGACTACTTCAGCCCCGTTGA-TCCCTGCCAAGAAGCTTCCA 488
Query 567 GCATTTGGTAGTGATGACGGAACTGTATGGGATGATGGTGCTTACGTTGGGGTTAAGAAG 626
||| ||||||||||||| ||||||| |||||| ||||||||||| ||| |||||||||
Sbjct 489 GCACTTGGTAGTGATGAAGGAACTGCATGGGACGATGGTGCTTATAATGGTGTTAAGAAG 548
Query 627 GTGTACGTTGGACAAGCCCAAGATGGAATCTCAGCTGTTAAGTTTGTGTACGACAAAAGC 686
||| | | || |||| | ||||| | |||| |||||||||| ||| | ||| |
Sbjct 549 GTGCATATAGGTCAAGGACTCGATGGTGTGGCAGCGGTTAAGTTTGAGTATGTCAATGGT 608
Query 687 CCTGAGGAG-GTCACAGGAGAAGAACATGGAAAGA-GTACTCTACTCGGATTCGAAGAGT 744
|| | | || ||||| |||| |||||||| | ||||||||||| ||||||||||
Sbjct 609 TCTCAA-ATTGTTGTTGGAGATGAACGTGGAAAGACG-ACTCTACTCGGCTTCGAAGAGT 666
Query 745 TCGTAC-TTGACTATCCAAGTGAATACATCACCGCAGTCGATGGCACTTATGATAAAATC 803
||| || |||| |||||||||||||||||||| || || |||||||| || ||||||||
Sbjct 667 TCG-ACATTGATTATCCAAGTGAATACATCACGGCTGTGGATGGCACCTACGATAAAATA 725
Query 804 TTTGGGAGTGA-TGGCT-CAGTCATAACTATGCTCAGGTTCAAGACTAATAAGCAAACGT 861
||||| ||||| | || | ||||| || ||||| ||||||||||||||||||||||| |
Sbjct 726 TTTGGAAGTGACT--CTGCGGTCATTACCATGCTTAGGTTCAAGACTAATAAGCAAACAT 783
Query 862 CTCC-TCCCTTTGGACTTGAAGCTGGCACAGTCTTCGAACTCAAAGAGGAAGGCCACAAG 920
| | ||||||||| |||||||||||| || ||| ||||| ||||||||||||||||||
Sbjct 784 C-CAATCCCTTTGGTCTTGAAGCTGGCGTAGCCTTTGAACTTAAAGAGGAAGGCCACAAG 842
Query 921 ATCGTTGGTTTCCATGGAAGAGCC-GATGTTCTGCTCCA-CAAAATTGGAGTCCATGTTC 978
|| || || |||||||||| || | | || | | || || |||| ||||||||||||| |
Sbjct 843 ATTGTCGGATTCCATGGAAAAGTCAG-TGATATTCTTCATCAAA-TTGGAGTCCATGTCC 900
Query 979 GTCCTTTATC-C-AACTGATGATGGAGC-TCTTTATCCTTG 1016
||| ||| | ||||||| ||| | | ||||| || |||
Sbjct 901 -TCCCC-ATCACCAACTGATCATG-A-CATCTTTCTCTTTG 937
> Ahg479101 jgi|Araly1|479101|fgenesh2_kg.3__1802__AT3G16440.1
Length=1050
Score = 446 bits (241), Expect = 2e-124
Identities = 396/470 (84%), Gaps = 14/470 (3%)
Strand=Plus/Plus
Query 534 ACAACTCCGTTGACTCCTGCCAAGCAGCTAACGGCATTTGGTAGTGATGACGGAACTGTA 593
|||||||| |||| |||||||||| | ||| | ||| ||||| |||| || ||||||| |
Sbjct 469 ACAACTCCTTTGAATCCTGCCAAGAAACTACCAGCAGTTGGTGGTGACGAAGGAACTGCA 528
Query 594 TGGGATGATGGTGCTTACGTTGGGGTTAAGAAGGTGTACGTTGGACAAGCCCAAGATGGA 653
||||||||||||||||||| ||| |||||||| ||||| | || ||||||||||||||
Sbjct 529 TGGGATGATGGTGCTTACGATGGTGTTAAGAAAGTGTATATAGGGCAAGCCCAAGATGGT 588
Query 654 ATCTCAGCTGTTAAGTTTGTGTACGACAAAAGCCCTGAGGAGGTCACAGGAGAAGAACAT 713
|| ||||| || ||||||||||||||||| || ||| ||| | |||||| || |||
Sbjct 589 ATATCAGCAGTAAAGTTTGTGTACGACAAGGGCGCTGCGGATATTGTAGGAGATGAGCAT 648
Query 714 GGAAA-GAGTACTCTACTCGGATTCGAAGAGTTCGTACTTGACTATCCAAGTGAATACAT 772
||||| || ||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 649 GGAAATGA-TACTCTACTCGGATTTGAAGAGTTCCAACTTGACTATCCAAGTGAATACAT 707
Query 773 CACCGCAGTCGATGGCACTTATGATAAAATCTTTGGGAGTGATGGCT-CAGTCATAACTA 831
|| ||||| || ||||| ||||||||||||||||| ||||| | || |||||||| ||
Sbjct 708 TACAGCAGTTGAAGGCACATATGATAAAATCTTTGGTAGTGA-GACTGAAGTCATAAATA 766
Query 832 TGCTCAGGTTCAAGACTAATAAGCAAACGTCTCCTCCCTTTGGACTTGAAGCTGGCACAG 891
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 767 TGCTTAGGTTCAAGACTAATAAGCAAACGTCTCCTCCCTTTGGAATTGAAGCTGGCACAG 826
Query 892 TCTTCGAACTCAAAGAGGAAGGC-CACAAGATCGTTGGTTTCCATGGAAGAGCCGATGTT 950
||||||||||||||||||||| | ||||||||| || |||||||||| || | | |||
Sbjct 827 CCTTCGAACTCAAAGAGGAAGGTTC-CAAGATCGTCGGGTTCCATGGAAAAGTC-A-GTT 883
Query 951 C--TGCTCCA-CAAAATTGGAGTCCATGTTCGTCCTTT-ATCCAACTGAT 996
| |||| || || ||||||||||||| | ||| | | |||||||||
Sbjct 884 CGCTGCTTCATCAGT-TTGGAGTCCATGTCCTTCCAGTCA-CCAACTGAT 931
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47615523333
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5