BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G16500.1
Length=1313
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929476 jgi|Araly1|929476|scaffold_301933.1 1291 0.0
Ahg923698 jgi|Araly1|923698|scaffold_104979.1 398 7e-110
> Ahg929476 jgi|Araly1|929476|scaffold_301933.1
Length=844
Score = 1291 bits (699), Expect = 0.0
Identities = 804/853 (94%), Gaps = 14/853 (2%)
Strand=Plus/Plus
Query 183 AAGGAATCTTGGGTTGATCAATGGAAGGTTGTCCAAGAAACAGAGAAATCGGTCCAAAAC 242
||| ||||||| |||||||||||| ||| || ||||||||||| ||||||||||
Sbjct 1 AAGAAATCTTGTGTTGATCAATGG-AGG--GT------AACAGAGAAATGGGTCCAAAAC 51
Query 243 TTCTTGATTTGATTCCACAAGGAAGGAAATGGTACCAAGAAGACAAGAACAACACAGATC 302
|||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||
Sbjct 52 TTCTTGATTTGATTCCCCAAGGACGAAAATGGTACCAAGAAGACAAGAACAACACAGATC 111
Query 303 AGGAGAAGAAACTTGAGCTAAGGCTTGGACCACCCGGTGGTGATGAAGAAGATCATTCAG 362
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 112 AGGAGAAGAAACTTGAGCTAAGGCTTGGACCACCAGGTGGTGATGAAGAAGATCATTCAG 171
Query 363 CAATCaagaagaagaacacagagataagaaacatcaagaaggaaacagaagaCAAATCTT 422
| |||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||
Sbjct 172 CGATCAAGAAGAAGAACATAGAGACAAGAAACATCAAGAAGGAATCAGAAGACAAATCTT 231
Query 423 TCCACTGTTTTAATGGCAATCACTTCTCTCCTTCCAACAAAACCACTTCTGTTCCTCACA 482
|||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 232 TCCACTGTTTCAATGGCAATCACTTCTCTTCTTCCAACAAAACCACTTATGTTCCTCACA 291
Query 483 TCTCACAGAAAAGAACTGCTCCTGGTCCAGTGGTGGGTTGGCCTCCGGTTCGTTCGTTCA 542
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 292 TCTCACATAAAAGAACTGCTCCTGGTCCAGTAGTGGGTTGGCCTCCGGTTCGTTCGTTCA 351
Query 543 GAAAGAATCTAGCGAGCACAAGCTCTTCAAAGCTAGGTAACGAATCCT-C-T-CATGGAG 599
|||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||
Sbjct 352 GAAAGAATCTAGCGAGCACAAGCTCTTCAAAGCTAGGTAACGAATCCTCCTTACATGGAG 411
Query 600 GTCAAATCAACAAGAGTGATGATGGTGAAAAACAAGTTGAAACC-AAGAAGGAAGGAATG 658
|||| ||||||||||||||||| |||||||| ||||||| |||| ||||| |||||||||
Sbjct 412 GTCAGATCAACAAGAGTGATGAAGGTGAAAAGCAAGTTG-AACCTAAGAAAGAAGGAATG 470
Query 659 TTTGTCAAGATCAACATGGATGGTGTTCCTATTGGTCGTAAAGTTGATCTCAATGCTTAC 718
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 TTTGTCAAGATCAATATGGATGGTGTTCCTATTGGTCGTAAAGTTGATCTCAATGCTTAC 530
Query 719 AACAGCTACGAACAGCTCTCTTTTGTCGTTGACAAACTCTTCAGAGGTCTACTCGCAGCT 778
|| |||||||||||||||||||| | |||||||||||||||||||||| |||||||||||
Sbjct 531 AATAGCTACGAACAGCTCTCTTTCGCCGTTGACAAACTCTTCAGAGGTTTACTCGCAGCT 590
Query 779 CAAAGAGATATCTCTGATGGTCAAGGAGAAGAGAAACCTATCATTGGATTATTAGATGGG 838
|||||||||| ||||| |||| ||||||||||||||||||| |||||||| |||||||||
Sbjct 591 CAAAGAGATACCTCTGGTGGTGAAGGAGAAGAGAAACCTATAATTGGATTGTTAGATGGG 650
Query 839 AAAGGAGAATTTACTTTAACCTATGAAGACAATGAAGGGGACAAGATGCTTGTTGGGGAT 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 AAAGGAGAATTTACTTTAACCTATGAAGACAATGAAGGGGACAAGATGCTTGTTGGGGAT 710
Query 899 GTTCCATGGCAAATGTTTGTTTCATCTGTGAAGAGACTGCGTGTGATTAAAAGCTCTGAG 958
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 711 GTTCCATGGCAAATGTTCGTTTCATCGGTGAAGAGACTGCGTGTGATTAAAAGCTCTGAG 770
Query 959 ATTTCATCTGCCTTGACATTTGGATGCAGTAAGCAAGAGAAGATGATGCACTGAAGAGTC 1018
||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||
Sbjct 771 ATTTCATCTGCCTTGACATCTGGATGCAGTAAGCAAGAGAAGATGAAGCATTGAAGAGTC 830
Query 1019 TTTTTAGAAACTT 1031
|||||||||||||
Sbjct 831 TTTTTAGAAACTT 843
> Ahg923698 jgi|Araly1|923698|scaffold_104979.1
Length=848
Score = 398 bits (215), Expect = 7e-110
Identities = 511/646 (79%), Gaps = 51/646 (8%)
Strand=Plus/Plus
Query 386 ataagaaacatcaagaaggaaacagaagaCAAATCTTTCCACTGTTTTAATGGCAATCAC 445
|||||| |||||||||| ||| || ||||||||||| ||| || | | |||||| |||
Sbjct 199 ATAAGACACATCAAGAAAGAACCAAAAGACAAATCTATCCTCTCTCTCGCTGGCAAACAC 258
Query 446 TTCTCTCCTTCCAACAAAACCACTTCTGTTCCTCACATCTCACAGAAAAGAACTGCTCCT 505
|||||||||| | |||| | | |||||| | || |||||||||||||||
Sbjct 259 TTCTCTCCTT----C--TTCCAC--C-AAAAC-CACATC-C-CATAAAAGAACTGCTCCT 306
Query 506 GGTCCAGTGGTGGGTTGGCCTCCGGTTCGTTCGTTCAGAAAGAATCTAGCGAGCACAAGC 565
|||||||||||||| |||||||| ||||| || |||||||||||| |||| | ||||
Sbjct 307 GGTCCAGTGGTGGGATGGCCTCCCGTTCGATCATTCAGAAAGAATTTAGCTAATGGAAGC 366
Query 566 TCTTCAAAGCTAGGTAACGAATCCTC----TC-A-TGGAGGT--C---AA-ATC-AACAA 612
||||||||||| || || || ||| | || | ||| | | | || | | || ||
Sbjct 367 TCTTCAAAGCTTGGAAATGACTCCACCACCTCCAATGGTGTTTTCCTCAAGAACCAA-AA 425
Query 613 GAGTGATGATGGTGAAAA-ACAAGTTGAAACCAA-GA-AGGAAGGA---ATGTTTGTCAA 666
| ||||||||| || || |||| | ||| |||| || | ||||| |||||||| ||
Sbjct 426 GTGTGATGATGATGTTAAGACAA-TGGAA-CCAAAGAGAC-AAGGAGGCATGTTTGTAAA 482
Query 667 GATCAACATGGATGGTGTTCCTATTGGTCGTAAAGTTGATCTCAATGCTTACAACAGCTA 726
|||||||||| ||||||| || ||||||||||||||||||||| ||||| | || |||||
Sbjct 483 GATCAACATGTATGGTGTACCCATTGGTCGTAAAGTTGATCTCGATGCTCATAATAGCTA 542
Query 727 CGAACAGCTCTCTTTTG-TCGTTGACAAACTCTTCAGAGGTCTACTCGCAGCTCAAAGAG 785
|| ||| | ||||| | |||||||| |||||||||||||| || |||||||||||||
Sbjct 543 TGAGCAGTTGTCTTTCACT-GTTGACAAGCTCTTCAGAGGTCTTCTTGCAGCTCAAAGAG 601
Query 786 A-T-ATC-TCTGATGGTCA-AGGAGAAGAGAAACCTATCATTGGATTATTAGATGGGAAA 841
| | ||| || || | | || ||| || ||||| |||| ||||||||| ||||||||
Sbjct 602 ACTTATCATC--ATC-T-ATAGAAGATGAAAAACCAATCACTGGATTATTGGATGGGAAT 657
Query 842 GGAGAATTTACT-TTAACCTATGAAGACAATGAAGGGGACAAGATGCTTGTTGGGGATGT 900
||||||| |||| ||| | ||||||||||| ||||| |||||||||||||| || |||||
Sbjct 658 GGAGAATATACTCTTA-CTTATGAAGACAACGAAGGAGACAAGATGCTTGTAGGAGATGT 716
Query 901 TCCATGGCAAATGTTTGTTTCATCTGTGAAGAGACTGCGTGTGATTAAAAGCTCTGAGAT 960
|||||||||||||||||| || || |||||||| |||||||||||||||| |||||||||
Sbjct 717 TCCATGGCAAATGTTTGTATCTTCAGTGAAGAGGCTGCGTGTGATTAAAACCTCTGAGAT 776
Query 961 TTCATCTGCCTTGACATTTGGA--TGCAGTAAGCAAGAGAAGATGA 1004
||| || || || |||| |||| || ||||||||||||||||||
Sbjct 777 TTCTTCAGCATTAACATATGGAAATG--GTAAGCAAGAGAAGATGA 820
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49102317096
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5