BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G16520.3
Length=1656
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479115 jgi|Araly1|479115|fgenesh2_kg.3__1816__AT3G16520.3 2481 0.0
> Ahg479115 jgi|Araly1|479115|fgenesh2_kg.3__1816__AT3G16520.3
Length=1655
Score = 2481 bits (1343), Expect = 0.0
Identities = 1557/1661 (94%), Gaps = 11/1661 (1%)
Strand=Plus/Plus
Query 1 CCAATTCTTGCAACAAATCTCACAAACCTTAGGAAGAGCCATGGGTGAAGAAGCTATAGT 60
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1 CCATTTCTTGCAACAAATCTCACAAACCTTAGGAAGAGCCATGGGAGAAGAAGCTATAGT 60
Query 61 TCTGTATCCTGCACCACCAATAGGTCACTTAGTGTCCATGGTTGAGTTAGGTAAAACCAT 120
||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 61 TCTGTATCCAGCACCACCAATAGGTCACTTAGTGTCCATGGTTGAGTTAGGCAAAATCAT 120
Query 121 CCTCTCCAAAAACCCATCTCTCTCCATCCACATTATCTTAGTTCCACCGCCTTATCAGCC 180
|||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 121 CCTCTCCAAAAATCCATCTCTATCCATCCACATCATCTTAGTTCCACCGCCTTATCAGCC 180
Query 181 GGAATCAACCGCCACTTACATCTCCTCCGTCTCCTCCTCCTTCCCTTCAATAACCTTCCA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GGAATCAACCGCCACTTACATCTCCTCCGTCTCCTCCTCCTTCCCTTCAATAACCTTCCA 240
Query 241 CCATCTTCCCGCCGTCACACCGTActcctcctcctccacctctcgccaccaccacgaatc 300
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||
Sbjct 241 CCATCTTCCCGCCGTCACACCGTACTCTTCCTCATCCACCTCTCGCCACCACCACGAGTC 300
Query 301 tctcctcctagagatcctctGTTTTAGCAACCCAAGTGTCCACCGAACTCTTTTCTCACT 360
||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 301 ACTCCTCCTAGAAATCATCTGTTTTAGCAACCCAAGTGTCCACCGAACCCTTTTCTCACT 360
Query 361 CTCTCGGAATTTCAATGTCCGAGCAATGATCATCGATTTCTTCTGCACCGCCGTTTTAGA 420
||||||||| ||||| |||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 361 CTCTCGGAACTTCAACATCCGAGCAATGATCATCGATTTCTTCTGCACCGCGGTTATAGA 420
Query 421 CATCACCGCTGACTTCACGTTCCCGGTTTACTTCTTCTACACCTCTGGAGCCGCATGTCT 480
|||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||| ||
Sbjct 421 CATCACCGCTGACTTCACCTTCCCGGTTTACTACTTCTTCACCTCTGGAGCCGCATGCCT 480
Query 481 CGCCTTTTCCTTCTATCTCCCGACCATCGACGAAACAACCCCCGGAAAAAACCTCAAAGA 540
||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||
Sbjct 481 CGCCTTTTCCTTCTATCTCCCGATCATCCACGAAACAACCCAGGGAAAAAACCTCAAAGA 540
Query 541 CATTCCTACAGTTCATATCCCCGGCGTTCCTCCGATGAAGGGCTCCGATATGCCTAAGGC 600
|||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 541 CATTCCTACACTTCATATCCCCGGCGTTCCTCCGATGAAGGGCTCTGATATGCCCAAGGC 600
Query 601 GGTGCTCGAACGAGACGATGAGGTCTACGATGTTTTTATAATGTTCGGTAAACAGCTCTC 660
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 601 GGTGCTTGAACGAGACGATGAGGTCTACGATGTTTTTATAGTGTTCGGTAAACAGCTCTC 660
Query 661 GAAGTCGTCAGGGATTATTATCAATACGTTTGATGCTTTAGAAAACAGAGCCATCAAGGC 720
|| || |||||||||||| | |||||||||||||||||||| |||||||||| |||||
Sbjct 661 AAAATCTTCAGGGATTATTGTTAATACGTTTGATGCTTTAGAGCACAGAGCCATTAAGGC 720
Query 721 CATAACAGAGGAGCTCTGTTTTCGCAATATTTATCCAATTGGACCGCTCATTGTAAACGG 780
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 721 CATAACAGAGGAGCTCTGTTTTCGCAATATTTATCCGATTGGACCGCTCATTGTAAACGG 780
Query 781 AAGAATCGAAGATAGAAACGACAACAAGGCAGTTTCTTGTCTCAATTGGCTGGATTCGCA 840
||||| |||||||| |||||| ||| |||||||||||||||| |||||||| ||||||||
Sbjct 781 AAGAACCGAAGATAAAAACGATAACGAGGCAGTTTCTTGTCTAAATTGGCTCGATTCGCA 840
Query 841 GCCGGAAAAGAGTGTTGTGTTTCTCTGTTTTGGAAGCTTAGGTTTGTTCTCAAAAGAACA 900
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 841 GCCGGAAAAGAGTGTTGTGTTCCTCTGTTTTGGAAGCTTGGGTTTGTTCTCAAAAGAACA 900
Query 901 GGTGATAGAGATTGCTGTTGGTTTAGAGAAAAGTGGGCAGAGATTCTTGTGGGTGGTCCG 960
| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 GTTGAAAGAGATTGCTGTTGGTTTAGAGAAAAGTGGGCAGAGATTCTTGTGGGTGGTCCG 960
Query 961 TAATCCACCCGAGTTAGAAAAGACAGAACTGGATTTGAAATCACTCTTACCAGAAGGATT 1020
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 961 TAATCCACCTGAGTTAGAAAATACAGAACTGGATTTGAAATCACTCTTACCAGAAGGATT 1020
Query 1021 CTTAAGCCGAACCGAAGACAAAGGGATGGTCGTGAAATCATGGGCTCCGCAAGTTCCGGT 1080
||||||||| |||||| ||| ||| |||||| | ||||||||||||||||||||||||||
Sbjct 1021 CTTAAGCCGGACCGAAAACAGAGGAATGGTCATCAAATCATGGGCTCCGCAAGTTCCGGT 1080
Query 1081 TCTGAATCATAAAGCAGTCGGGGGATTCGTCACTCATTGCGGTTGGAATTCAATTCTTGA 1140
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||
Sbjct 1081 TCTGAATCATAAAGCAGTCGGCGGATTTGTCACTCATTGCGGTTGGAATTCAATTCTCGA 1140
Query 1141 AGCTGTTTGTGCTGGTGTGCCGATGGTGGCTTGGCCGTTGTACGCTGAGCAGAGGTTTAA 1200
||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1141 AGCTGTTTGCGCAGGTGTGCCGATGGTGGCTTGGCCGTTGTACGCTGAGCAAAGGTTTAA 1200
Query 1201 TAGAGTGATGATTGTGGATGAGATCAAGATTGCGATTTCGATGAATGAATCAGAGACGGG 1260
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 TAGAGTGATGATTGTGGAGGAGATCAAGATTGCGATTTCGATGAATGAATCAGAGACGGG 1260
Query 1261 TTTCGTGAGCTCTACAGAGGTGGAGAAACGAGTCCAAGAGATAATTGGGGAGTGTCCGGT 1320
|||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||
Sbjct 1261 TTTCGTGAGCTCTACAGAGGTGGAGAAACGAGTCCAAGAGTTAATTGGGGAGTCTCCAGT 1320
Query 1321 TAGGGAGCGAACCATGGCTATGAAGAACGCAGCCGAATTAGCCTTGACAGAAACTGGTTC 1380
||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 TAGGGAGAGAACCATGGCCATGAAGAACGCAGCCGAATTAGCCTTGACAGAAACTGGTTC 1380
Query 1381 GTCTCATACCGCATTAACTACTTTACTCCAGTCGTGGAGCCCAAAGTGATCTTTGAAATT 1440
|||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||
Sbjct 1381 GTCTCATACCGCATTAACTACTTTACTCCAATCTTGGAGCCCAAAGTGATCGTTGAAATT 1440
Query 1441 AAGTCTTGC-ATCAATTAATAACTTTGTAGTCTCTCAGAATCATGTCTTTGGGGGTTATT 1499
|||| ||| | |||||| ||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1441 AAGTGTTGTGA-CAATTAGTAACTTTGTAGTCTCTCAGAATCATGTCTATGGGG-TTATT 1498
Query 1500 CGTTTTACTAGTTCAAAGTTATGT-CTCTGAGACCGCAGATGGAAAGAA-CAATTT-ATA 1556
|||| |||||||||||||||||| |||||||||| |||| |||| || || ||| ||
Sbjct 1499 TGTTTAACTAGTTCAAAGTTATGTTCTCTGAGACCACAGAAAGAAACAAACA-TTTCATG 1557
Query 1557 TCGTTTGTCGTTGTCCTGTGTGCGTTT-GTTCATCATTGAACTCAGCAAACCGAACCATG 1615
||||||||||| |||| |||||| ||| |||| ||||||||||||||||| |||||||||
Sbjct 1558 TCGTTTGTCGTAGTCCCGTGTGC-TTTCGTTCTTCATTGAACTCAGCAAATCGAACCATG 1616
Query 1616 CCGATACATCACACTGAAAATTTTTGCAATAAATTTTGGCT 1656
| |||| |||||||||||||| ||||| ||||||||||||
Sbjct 1617 CTGATA--TCACACTGAAAATTCTTGCAGTAAATTTTGGCT 1655
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62087099350
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5