BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G16560.1
Length=2166
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479119 jgi|Araly1|479119|fgenesh2_kg.3__1820__AT3G16560.1 3140 0.0
> Ahg479119 jgi|Araly1|479119|fgenesh2_kg.3__1820__AT3G16560.1
Length=2040
Score = 3140 bits (1700), Expect = 0.0
Identities = 1947/2060 (95%), Gaps = 41/2060 (2%)
Strand=Plus/Plus
Query 1 AAACACTACCAAAATTAGCAAACAAAAAACATTCACTCGTTAACTCTTCTCCTCCATCCA 60
||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAGACTACCAAAATTAGCAAAC-AAAAACATTCACTCGTTAACTCTTCTCCTCCATCCA 59
Query 61 ATTTCACTTTCTCTCACTCATTTTTATTCGTCGTCG------TCGTCTCCTCTGATTTGT 114
|||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 60 ATTTCATTTTCTCTCACTCATTTTTATTCGTCGTCGTCTTTTTCGTCTCCTCTGATTTGT 119
Query 115 TCTTTTTTCTCTAAATTCGCTTCGCTTCTTCTCAGTTCTACGAATCTTCGATTCTCTTT- 173
|| ||| |||||||| |||||||||||||| |||| || | ||| ||| |||
Sbjct 120 TC-TTTCTCTCTAAA-----TTCGCTTCTTCTCACTTCTCCG-A--TTC---TCT-TTTG 166
Query 174 GGTTTTCTCCATCCCCGTATAC-------GTTTAAGAACATTGCAAGAAAGTGAAGaaaa 226
|||||| ||||| ||||||||| |||| |||||||| |||||||||| | ||||
Sbjct 167 GGTTTT-TCCATTCCCGTATACGTTAAGTGTTTCAGAACATTTCAAGAAAGTG-A-AAAA 223
Query 227 aaaaTGCAGGAAGGGACTGATCCGTATGGTGAGATTGAGATAAGTTTTGGTTATCAATGC 286
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 224 AAAATGCAGGAAGGGACTGATCCTTATGGTGAGATTGAGATAAGTTTTGGTTATCAGTGC 283
Query 287 AATAAT---AAGAAGATAGGAATCCCTGAAGATAAAATTGCTGATGGTCGTGAGGTTCTT 343
|||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 284 AATAATAAGAAGAAGATAGGGATCCCTGAAGATAACATTGCTGATGGTCGTGAGGTTCTT 343
Query 344 GGTGGGTTTAGGCTACAAAAGACTAGCAGTTTCTCTTGTTTATCAGGAGCTGCTTTAAGT 403
|||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||
Sbjct 344 GGTGGGTTTAGGCTTCATAAGACAAGCAGTTTCTCTTGTTTATCAGGAGCTGCTTTAAGC 403
Query 404 GGAAACCCCACTTTAGCCAATACTAATATCTGCAATGGAGTCATTGGTTCTGAGATATTG 463
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 404 GGAAACCCGACTTTAGCCAATACTAATATCTGCAATGGAGTGATTGGTTCTGAGATATTG 463
Query 464 CCGTCTCTGGATTCTCCGAAATCTTTCAGGAAAGTTCCGTCTTCGCCTGCGCTTTCGAAG 523
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 464 CCGTCTCTGGATTCTCCTAAATCTTTCAGGAAAGTTCCTTCTTCGCCTGCGCTTTCGAAG 523
Query 524 CTTGATATACTCTCTCCTTCTCTCCATGGAAGTATGGTGAGTCTAAGCTGCAGCTCGTCT 583
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 524 CTTGATATACTCTCTCCTTCTCTCCATGGAAGTATGGTCAGTCTAAGCTGTAGCTCGTCT 583
Query 584 ACTAGTCCGAGTCCTCCTGAGCCTGAATCTTGTTACTTGACGTCAATGAGTTCTCCTTCT 643
||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 584 ACTAGCCCGAGTCCTCCTGAGCCAGAGTCTTGTTACTTGACGTCAATGAGTTCTCCTTCT 643
Query 644 TCTGTTAATGAAGGGTTTCTTCTCTCTGCTATGGAAGTTCAAGTTGCGGGTGGTGCTGCA 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 644 TCTGTTAATGAAGGGTTTCTTCTCTCTGCTATGGAAGTTCAAGTTGCGGGTGGTGCTGCA 703
Query 704 GGGGAAGATAGAGTTCAAGCTGTTTGCTCTGAGGAGAATGGTTGGTTGTTTTGCGCTATC 763
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 704 GGGGAAGATAGGGTTCAAGCTGTTTGCTCTGAGGAGAATGGTTGGTTGTTTTGCGCTATT 763
Query 764 TATGATGGATTCAACGGAAGAGATGCTGCTGATTTCTTGGCATGTACTTTATATGAGTCC 823
||||||||||| || |||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 764 TATGATGGATTTAATGGAAGAGATGCTGCTGATTTCTTGGCTTGTACTTTGTATGAGTCC 823
Query 824 ATTGTGTTTCATCTTCAGTTGCTTGATCGTCAAATGAAGCAAACAAAGTCCGATGATGAT 883
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 824 ATTGTGTTTCATCTTCAGTTGCTTGATCGTCAAATGAAGCAAACTAAGTCCGATGATGAT 883
Query 884 GGCGAAAAGTTGGAATTGTTATCAAATATAAGTAATGTAGATTACTCTTCCACTGATTTG 943
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 884 GGCGAAAAACTGGAATTGTTATCAAATATAAGTAAAATAGATTACTCTTCCACTGATTTG 943
Query 944 TTCAGGCAAGGAGTACTAGATTGCTTGAACCGTGCGCTTTTTCAGGCGGAAACCGATTTC 1003
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 944 TTCAGGCAAGGAGTGCTAGATTGCTTAAACCGTGCGCTTTTTCAGGCGGAAACCGATTTC 1003
Query 1004 CTAAGGATGGTTGAGCAAGAAATGGAAGAAAGACCGGATTTAGTATCCGTTGGATCTTGT 1063
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1004 CTAAGGATGGTTGAGCAAGAAATGGAAGAAAGACCGGATTTAGTATCAGTTGGATCTTGC 1063
Query 1064 GTTTTGGTCACTCTCCTGGTTGGGAAGGATCTATACGTCCTTAATCTTGGTGATAGCAGA 1123
||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||
Sbjct 1064 GTTTTGGTCACTCTCCTTGTCGGGAAGGATCTATACGTCCTTAATCTAGGTGATAGCAGA 1123
Query 1124 GCTGTTCTAGCGACCTACAATGGTAATAAGAAGCTGCAAGCTGTTCAGCTCACAGAGGAT 1183
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1124 GCTGTTCTAGCGACATACAAGGGTAATAAGAAGCTGCAAGCTGTTCAGCTCACAGAGGAT 1183
Query 1184 CATACAGTTGATAACGAAGTCGAAGAAGCTAGACTCTTAAGTGAGCATCTTGATGATCCT 1243
|| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 1184 CACACAGTTGATAACGAAGTTGAAGAAGCTAGACTCTTAAGTGAACATCTTGATGATCCT 1243
Query 1244 AAGATCGTTATTGGTGGGAAAATCAAAGGAAAGCTTAAAGTTACTCGTGCTCTCGGAGTT 1303
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1244 AAAATCGTTATTGGTGGGAAAATCAAAGGAAAGCTTAAAGTTACTCGTGCTCTCGGAGTT 1303
Query 1304 GGTTACTTGAAGAAGGAGAAACTAAATGATGCACTCATGGGGATCCTCCGCGTTCGTAAC 1363
|||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||
Sbjct 1304 GGTTACTTGAAGAAGGAGAAACTAAACGATGCACTCATGGGAATTCTCCGCGTTCGTAAC 1363
Query 1364 CTTTTGAGCCCGCCTTATGTTTCAGTGGAACCATCGATGAGAGTTCACAAGATAACGGAA 1423
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1364 CTTTTGAGCCCGCCTTACGTTTCAGTGGAACCATCGATGAGAGTTCACAAGATAACGGAA 1423
Query 1424 TCAGATCACTTTGTTATAGTTGCAAGCGATGGTTTGTTTGATTTCTTCAGCAACGAGGAA 1483
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1424 TCAGATCACTTTGTGATAGTTGCAAGCGATGGTTTGTTTGATTTCTTCAGCAACGAGGAA 1483
Query 1484 GCGATTGGGCTCGTCCATTCCTTCGTTTCTAGTAATCCTTCTGGTGATCCAGCAAAGTTT 1543
||||||| ||| |||||||||||| |||||||||||||||||||||| || |||||||||
Sbjct 1484 GCGATTGAGCTTGTCCATTCCTTCATTTCTAGTAATCCTTCTGGTGACCCCGCAAAGTTT 1543
Query 1544 CTGCTTGAACGTCTTGTAGCTAAAGCTGCTGCTCGTGCTGGCTTTACCTTGGAAGAATTG 1603
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1544 CTGCTTGAACGTCTTGTAGCTAAAGCTGCTGCTCGTGCTGGCTTTACTTTGGAAGAATTG 1603
Query 1604 ACGAATGTTCCGGCTGGTAGGAGAAGGAGATATCATGACGATGTGACTATAATGGTAATC 1663
||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1604 ACGAATGTTCCAGCTGGTAGGAGACGGAGATATCATGACGATGTGACTATAATGGTAATC 1663
Query 1664 ACTCTAGGTACCGATCAACGTACCTCAAAAGCTTCTACGTTCGTGTGATTTTGATGATGA 1723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1664 ACTCTAGGTACCGATCAACGTACCTCAAAAGCTTCTACGTTCGTGTGATTTTGATGATGA 1723
Query 1724 TGGCGACAAATGTTGGATTGGTAAAATTGTAATTAGTCTCACTGATCTTCTTTTAGACTT 1783
|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1724 TGGCGATAAATGTTGGATTGGTAAAATTGTAATTAGTCTCACTGATCTTCTTT-AGACTT 1782
Query 1784 TGGAACTGATCATCAGTTTTT-CAATTCTTTGGAACTGGTATAATATTATTTCA-TGTAT 1841
|| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1783 TGAAACTGATCATCAGTTTTTTCAATTCTTTGGAACTGGTATAATATTATTTCAGTGTAT 1842
Query 1842 AGTCCGTATATATATATCATTGTAGTAGTCTTAGTTGCGAGCCTAGAATTCATCAGTTTG 1901
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1843 AGTCCGTATATATAT--CATTGTAGTAGTCTTAGTTGCGAGCCTAGAATTCATCAGTTTG 1900
Query 1902 TCTCAGCCTGAGTCATATGTTCTGttttttatttttttG-GGC-TTTTGGGTGTTTACTT 1959
|||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||| |
Sbjct 1901 TCTCAGCCTGAGTCATATGTTCTGTTTTTTTTTTTTTTTAGGCCTTTTGGGTGTTTAGTC 1960
Query 1960 GGTTTGGTTTATTACCTTGGATTTTAAGTTCTAACATAGACTGAATCGGTTTTGTCAATG 2019
||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||
Sbjct 1961 GGTTTGGTTTATTACCTGGGATTGTAAGTTGTAACATAGACTGAATCGGTTTTGTCAATT 2020
Query 2020 GGCTAACTACTAGTGAAATA 2039
||||||||||||||||||||
Sbjct 2021 GGCTAACTACTAGTGAAATA 2040
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81513124300
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5