BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G16640.1 Length=956 Score E Sequences producing significant alignments: (Bits) Value Ahg479130 jgi|Araly1|479130|fgenesh2_kg.3__1831__AT3G16640.1 1061 0.0 > Ahg479130 jgi|Araly1|479130|fgenesh2_kg.3__1831__AT3G16640.1 Length=870 Score = 1061 bits (574), Expect = 0.0 Identities = 740/816 (91%), Gaps = 27/816 (3%) Strand=Plus/Plus Query 31 CTCGTCGCTGCGTCTCTCTCCCGCAACCTTCGATTTTCGTTTATTCGCATCCATC---G- 86 ||||||||||||||||||||||||||||||| ||||||||| |||| |||||||| | Sbjct 1 CTCGTCGCTGCGTCTCTCTCCCGCAACCTTCAATTTTCGTTAATTCACATCCATCGGAGA 60 Query 87 GAGAGAGA-AAA-CAATC-AATAAGCGACCATGTTGGTGTACCA-AGATCTTCTCACCGG 142 |||||||| ||| |||| |||||||||||||||||||||| || ||||||||||||||| Sbjct 61 GAGAGAGATAAATAAATCAAATAAGCGACCATGTTGGTGTA-CACAGATCTTCTCACCGG 119 Query 143 TGATGAGCTTCTGTCTGACTCTTTCCCTTACAAGGAGATTGAGAATGGAATCCTCTGGGA 202 ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| Sbjct 120 TGATGAGCTTCTGTCTGACTCTTTCCCTTACAAGGAGATTGAGAATGGAATTCTTTGGGA 179 Query 203 AGTAGAAGGAAAGTGGGTTACTGTGGGAGCTGTAGATGTTAACATTGGTGCCAATCCATC 262 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 180 AGTAGAAGGAAAGTGGGTTACTCTGGGAGCTGTAGATGTTAACATTGGTGCCAATCCATC 239 Query 263 TGCTGAAGAAGGTGGTGAGGATGAAGGTGTTGATGACTCTACTCAAAAGGTTGTTGACAT 322 |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| Sbjct 240 TGCTGAAGAAGGTGGTGAGGATGAGGGTGTTGATGACTCTGCTCAAAAGGTTGTTGACAT 299 Query 323 TGTCGACACCTTCAGACTTCAGGAGCAACCAACTTATGACAAGAAGGGATTCATCGCTTA 382 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 300 TGTCGACACCTTCAGACTTCAGGAGCAACCAACTTATGACAAGAAGGGATTCGTCGCTTA 359 Query 383 CATTAAGAAATACATTAAG-CTTTTGACACCCAAGCTCAGCGAAGAAGATCAAGCTGTC- 440 |||||||||||||| ||| | || |||||||||||||| ||||||| | || | || Sbjct 360 TATTAAGAAATACATCAAGTCGTT-GACACCCAAGCTCAACGAAGAACAGCAGGAA-TCC 417 Query 441 TTCAAGAAGGGTATTGAGGGAGCTACCAAGTTT-TTGCTCCCCAGGCTCAGTGACTTCCA 499 ||||||||||||||||||||||||||||||| || ||||||| ||||| ||| |||| Sbjct 418 TTCAAGAAGGGTATTGAGGGAGCTACCAAGTACCTT-CTCCCCAAGCTCAAAGACCTCCA 476 Query 500 ATTCTTTGTTGGGGAGGGTATGCATGATGACAGCACTTTGGTCTTTGCTTACTACAAGGA 559 |||||||||||||||| ||||| ||||||||| ||||||||||||| ||||||||||| Sbjct 477 ATTCTTTGTTGGGGAGTCAATGCACGATGACAGCTCTTTGGTCTTTGCCTACTACAAGGA 536 Query 560 GGGTTCAACTAACCCAACATTTTTGTACTTCGCTCATGGTTTGAAGGAGGTCAAGTGCTG 619 ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 537 TGGTGCAACTAACCCAACATTTTTGTACTTCGCACATGGTTTGAAGGAGGTCAAGTGCTG 596 Query 620 AGAGAGAAGCTCTCGTTGGGTTACTGTGGTCGGTCGCAGCGACTCTCTAAGTTTATGTTT 679 |||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||| Sbjct 597 AGAGAGAAGCTCTCTTTGGGTTACTCTGGTCGG-CGCAGCGACTCTCTAAGTTTATGTTT 655 Query 680 CTTTATATTGTC-CTGTGTTTCGTCGTCGTCCCCTATTAAAATTACCTGCCAGTTTACTT 738 |||||||||||| | ||||||||||||| ||| |||||||||||||| ||||||| ||| Sbjct 656 CTTTATATTGTCTC-GTGTTTCGTCGTC--CCC-TATTAAAATTACCTACCAGTTTGCTT 711 Query 739 TTCTCTCTTCTTGTTTTCTGTGTTGGAAGA-TTCTCAAGTTATTTATTCCGCAAAA-AAC 796 || ||||||||| | | |||||||||| || | |||||||| | |||| |||| ||| Sbjct 712 TTGTCTCTTCTTCTCTCCTGTGTTGGATTTCTTTT-AAGTTATTGAATCCG-AAAACAAC 769 Query 797 GGTTTATCA-TTTACAATTAGTTGAATTTTGGTCGT 831 ||||||||| ||| | |||||||||||||||||||| Sbjct 770 GGTTTATCAGTTT-CTATTAGTTGAATTTTGGTCGT 804 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 35492435727 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5