BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G16770.1
Length=1124
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929509 jgi|Araly1|929509|scaffold_301966.1 1131 0.0
> Ahg929509 jgi|Araly1|929509|scaffold_301966.1
Length=800
Score = 1131 bits (612), Expect = 0.0
Identities = 733/790 (93%), Gaps = 13/790 (2%)
Strand=Plus/Plus
Query 97 GAAACCCACAGCAACAAACAGAGAAAATGTGTGGCGGTGCTATTATTTCCGATTATGCCC 156
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1 GAAACCCACAGCAACAAACAGAGAAAATGTGTGGCGGTGCTATTATTTCCGATTTTGCCC 60
Query 157 CTCTCGTCACCAAGGCCAAGGGCCGTAAACTCACGGCTGAGGAACTCTGGTCAGAGCTCG 216
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 61 CTCTCGTCACCAAGGCCAAGGGCCGTAAACTCACGGCGGAGGAACTCTGGTCAGAGCTCG 120
Query 217 ATGCTTCCGCCGCCGACGACTTCTGGGGTTTCTATTCCACCTCCAAACTCCATCCCACCA 276
||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 121 ATGCTTCCGCCGCCGACGACTTCTGGGGTTTCTATCCCACCTCCAAACTTCATCCCACCA 180
Query 277 ACCAAGTTAACGTGAAAGAGGAGGCAGTGAAGAAGGAGCAGGCAACAGAGCCGG-G--G- 332
||||||||||||||||||||||| ||| |||| | |||||||||||||||||| | |
Sbjct 181 ACCAAGTTAACGTGAAAGAGGAGCCAGCGAAG--G-AGCAGGCAACAGAGCCGGCGACGG 237
Query 333 A-AA-CGGAGGAAGAGGAAGAATGTTTATAGAGGGATACGTAAGCGTCCATGGGGAAAAT 390
| || ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 238 AGAAACGGAGGAAGAGAAAGAATGTTTATAGAGGGATACGTAAGCGACCATGGGGAAAAT 297
Query 391 GGGCGGCTGAGATTCGAGATCCACGAAAAGGTGTTAGAGTTTGGCTTGGTACGTTCAACA 450
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 298 GGGCGGCTGAGATTCGAGATCCACGAAAAGGTGTCAGAGTTTGGCTTGGTACGTTCAACA 357
Query 451 CGGCGGAGGAAGCTGCCATGGCTTATGATGTTGCGGCCAAGCAGATCCGTGGTGATAAAG 510
||||||||||||| |||||||||||||| || ||||| ||||||||||||||||||||||
Sbjct 358 CGGCGGAGGAAGCCGCCATGGCTTATGACGTGGCGGCGAAGCAGATCCGTGGTGATAAAG 417
Query 511 CCAAGCTCAACTTCCCAGATCTGCACCATCCTCCTCCTCCTA--A-TTATACTCCTCCGC 567
||||||||||||||||||||||||| |||| ||||||||||| | || |||||| |||
Sbjct 418 CCAAGCTCAACTTCCCAGATCTGCATCATCATCCTCCTCCTACTACTTCTACTCCGCCGT 477
Query 568 CGTCATCGCCACGATCAACCGATCAGCCTCCGGCGAAGAAGGTCTGCGTTGTCTCTCAGA 627
||||| | |||||||||| |||||||||||||| |||||||||||||||| ||||||||
Sbjct 478 CGTCACCTTCACGATCAACTGATCAGCCTCCGGCTAAGAAGGTCTGCGTTGCCTCTCAGA 537
Query 628 GTGAGAGCGAGTTAAGTCAGCCGAGTTTCCCGGTGGAGTGTATAGGATTTGGAAATGGGG 687
| ||||||||||||| ||||| |||||| ||||||||||| | ||||| ||||||||||
Sbjct 538 GCGAGAGCGAGTTAACTCAGCTGAGTTTACCGGTGGAGTGCGTTGGATTCGGAAATGGGG 597
Query 688 ACGAGTTTCAGAACCTGAGTTACGGATTTGAGCCGGATTATGATCTGAAACAGCAGATAT 747
| ||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||
Sbjct 598 AAGAGTTTCAGAACCTGAGTTACGGATTTGAACCTGATTACGATCTGAAACAGCAGATAT 657
Query 748 CGAGCTTGGAATCGTTCCTTGAGCTGGACGGTAACACGGCGGAGCAACCGAGTCAGCTTG 807
|||| ||||| |||||||||||||||||||||| ||||||||||||||||||||| || |
Sbjct 658 CGAGTTTGGAGTCGTTCCTTGAGCTGGACGGTACCACGGCGGAGCAACCGAGTCAACTCG 717
Query 808 ATGAGTCCGTTTCCGAGGTGGATATGTGGATGCTTGATGATGTCATTGCGTCGTATGAGt 867
|||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 718 ATGAGTCCGTCTCCGAGGTGGATATGTGGATGCTTGATGATGTCATCGCGTCGTATGAAT 777
Query 868 aaaagaaaaa 877
|||| |||||
Sbjct 778 AAAA-AAAAA 786
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41897085783
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5