BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G16800.2 Length=1473 Score E Sequences producing significant alignments: (Bits) Value Ahg479146 jgi|Araly1|479146|fgenesh2_kg.3__1847__AT3G16800.2 1945 0.0 > Ahg479146 jgi|Araly1|479146|fgenesh2_kg.3__1847__AT3G16800.2 Length=1330 Score = 1945 bits (1053), Expect = 0.0 Identities = 1246/1332 (94%), Gaps = 41/1332 (3%) Strand=Plus/Plus Query 1 TCGAAGGAGAGAAAGCGAAAGATGATGATGAGTCATAGAGACAATTCACCAG-------C 53 |||||||||| ||||||||||||||||||||||||||||||| | ||||||| | Sbjct 1 TCGAAGGAGAAAAAGCGAAAGATGATGATGAGTCATAGAGACGACTCACCAGCTTATAAC 60 Query 54 TTATAAGTAGTAAATCCACCAAAAGGAAAATATATTCAACAGAGAAACTCCGATCAAGAA 113 |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| Sbjct 61 TTATAAGTAGTAAATCCACCAAAAGG-AAATATATTCAACAGAGAAACTCC-ATCAAGAA 118 Query 114 TATTCATATCAGA-GA-AGAAAAAGATCATAAGAG-AATCAAAG----AATGGTGCTTTT 166 ||||| | |||| | |||| | ||||||||||| || ||||| |||||||||||| Sbjct 119 TATTC--ACCAGATCATAGAAGAGGATCATAAGAGCAA-CAAAGAATTAATGGTGCTTTT 175 Query 167 ACCAGCGTTTTTGGACGGATTAGCGAGAACTGTATCGACGAAGAAAGGTAAAAAACTATC 226 ||||||||||||||||||||| |||||||| || |||||||||||||||||||| ||||| Sbjct 176 ACCAGCGTTTTTGGACGGATTTGCGAGAACCGTGTCGACGAAGAAAGGTAAAAATCTATC 235 Query 227 GGAAGATGAAGATGGAGGGAGAGAGATCGCAAAATCGATGATTAAAGATTCGAAGAAGAA 286 |||| |||||||||||||||||||||||||| |||| ||||||| |||||| |||||||| Sbjct 236 GGAAAATGAAGATGGAGGGAGAGAGATCGCAGAATCAATGATTAGAGATTCAAAGAAGAA 295 Query 287 CTCGACGTTGCTCGGTACTTCAGGCTTTGTTAGCTCCGAAAGTTCTAAGAGGTTTACCTC 346 |||||| ||| |||||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct 296 CTCGACTTTGATCGGTACTTCGGGCTTTGTTAGCTCCGAAAGTTCTAAGAGATTTACCTC 355 Query 347 TATTTGTTCTAATAGAGGTGAGAAAGGAATCAACCAAGATCGTGCAATTGTTTGGGAGGG 406 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 356 TATTTGTTCTAATAGAGGTGAGAAAGGAATCAACCAAGATCGTGCAACTGTTTGGGAGGG 415 Query 407 ATTTGGGTGCCAAGAAGACATAACATTTTGTGGGATGTTTGATGGACATGGACCATGGGG 466 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 416 ATTTGGGTGCCAAGAAGACATAACATTTTGTGGGATGTTTGATGGACATGGACCATGGGG 475 Query 467 ACATGTGATAGCCAAAAGAGTaaaaaaaTCATTTCCATCTTCTCTGCTTTGCCAATGGCA 526 |||||||||||||||||| |||||||| ||||| ||| |||||||||||||||| ||||| Sbjct 476 ACATGTGATAGCCAAAAGGGTAAAAAAGTCATTCCCAGCTTCTCTGCTTTGCCAGTGGCA 535 Query 527 ACAAACTCTTGCCTCCTTATCATCCTCGCCGGAATGTTCCTCTCCGTTTGATCTTTGGAA 586 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 536 ACAAACTCTTGCCTCCTTATCATCATCGCCGGAATGTTCCTCTCCGTTTGATCTTTGGAA 595 Query 587 GCAAGCTTGCCTGAAAACATTCTCCATCATCGATCTTGATCTCAAGATCAGTCCTTCCAT 646 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 596 GCAAGCTTGCCTGAAAACATTCTCCGTCATCGATCTTGATCTCAAGATCAGTCCTTCCAT 655 Query 647 TGATTCTTACTGTAGCGGCTGCACCGCTCTCACCGCTGTTTTGCAGGGTGATCATCTCGT 706 ||||||||| || |||||||||||||||||||| |||||||||||||| |||||||| || Sbjct 656 TGATTCTTATTGCAGCGGCTGCACCGCTCTCACTGCTGTTTTGCAGGGCGATCATCTTGT 715 Query 707 TATAGCAAATGCGGGTGACTCACGAGCAGTAATAGCAACAACTTCTGATGATGGAAACGG 766 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 716 TATAGCAAATGCGGGTGACTCACGAGCAGTAATAGCAACAACTTCTGATGATGGAAACGG 775 Query 767 TTTAGTCCCGGTTCAGCTCTCGGTAGACTTTAAACCAAACATTCCCGAGGAAGCAGAACG 826 |||||| |||||||||||||| |||||||||||||| ||||| ||||||||||||||||| Sbjct 776 TTTAGTGCCGGTTCAGCTCTCAGTAGACTTTAAACCGAACATCCCCGAGGAAGCAGAACG 835 Query 827 GATAAAACAATCGGATGGACGATTGTTCTGCCTAGACGATGAACCGGGAGTGTACCGGGT 886 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 836 GATAAAACAATCGGATGGACGATTGTTCTGCCTAGACGATGAACCGGGAGTGTACCGGGT 895 Query 887 GGGTATGCCTAATGGAGGATCACTCGGTTTAGCTGTTTCAAGAGCGTTTGGAGATTACTG 946 |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| Sbjct 896 AGGTATGCCTAATGGAGGATCACTCGGTTTAGCTGTTTCAAGAGCATTCGGAGATTACTG 955 Query 947 CCTTAAAGACTTCGGTTTAGTCTCTGAACCGGAAGTAACATACCGAAAGATAACCGACAA 1006 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 956 CCTTAAAGACTTCGGTTTAGTCTCTGAACCGGAAGTAACATACCGAAAGATAACCGACAA 1015 Query 1007 GGACCAGTTTCTAATCTTGGCCACCGATGGGATGTGGGATGTGATGACGAATAATGAGGC 1066 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1016 GGACCAGTTTCTAATCTTGGCCACCGATGGGATGTGGGATGTGATGACGAACAATGAGGC 1075 Query 1067 AGTGgagatagtaagaggagttaaagagagaagaaagagcgcaaagagattggtagagag 1126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1076 AGTGGAGATAGTAAGAGGAGTTAAAGAGAGAAGAAAGAGCGCAAAGAGATTGGTAGAGAG 1135 Query 1127 agCTGTGACGCTTTGGCGTAGGAAGAGAAGAAGCATCGCCATGGATGATAtttctgttct 1186 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1136 AGCTGTGACGCTTTGGCGTAGGAAGAGAAGAAGCATCGCCATGGATGATATTTCTGTTCT 1195 Query 1187 ctgtctcttctttcgtccttcttagtttaactcttctttaacctctctATTACTTATATA 1246 |||||||||||||||||||||||||| |||| | | || | | | Sbjct 1196 CTGTCTCTTCTTTCGTCCTTCTTAGT----CTCTG----A-C------AT-A-T-A---- 1233 Query 1247 CATTTATCAATGTATTTTGGGCGTCATTGAACAACAAAAATGTGATACATATACATTTTT 1306 ||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||||| Sbjct 1234 CATTTATCAATGTATTTTGAGCGTCAATGAACAACAAAAATGTGATATATATACATTTTT 1293 Query 1307 ACATAGAATAAT 1318 |||||||||||| Sbjct 1294 ACATAGAATAAT 1305 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55116584515 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5