BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G16910.1
Length=1976
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479158 jgi|Araly1|479158|fgenesh2_kg.3__1859__AT3G16910.1 2800 0.0
> Ahg479158 jgi|Araly1|479158|fgenesh2_kg.3__1859__AT3G16910.1
Length=1967
Score = 2800 bits (1516), Expect = 0.0
Identities = 1841/1992 (92%), Gaps = 46/1992 (2%)
Strand=Plus/Plus
Query 3 CAACGTGTTTGTGACTTTGTGATTGGATTCTCCACTCACTGCTCCAGATTTGAATAAACA 62
|||||| || |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1 CAACGTATTCGTGACTTTGTGATTGGATTCTCCACTCA---CTCCAGATTTGAATAAACA 57
Query 63 CAACCTAAACAAATC----GAGAG-AGTCAGATATGGCGG---CA------ACGAAGTGG 108
||||| ||||||||| ||||| ||||||||||||||| || ||||| |||
Sbjct 58 CAACCCAAACAAATCGAGAGAGAGAAGTCAGATATGGCGGCAACACCGGCGACGAAATGG 117
Query 109 CGTGACATCGATGATCTTCCCAAGATTCCGGCCAACTACACGGCGTTGACTCCGCTTTGG 168
|||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||
Sbjct 118 CGTGACATCGATGATCTTCCTAAGATTCCGGCCAACTACACGGCTTTGACGCCGCTTTGG 177
Query 169 TTCCTTGATAGGGCTGCCG-TGGTTCATCCGACCAGAAAATCTGTGATTCACGGATCGCG 227
|||||||||||||||| || ||||||| ||||| ||||||||||||||||||||||| ||
Sbjct 178 TTCCTTGATAGGGCTG-CGATGGTTCACCCGACTAGAAAATCTGTGATTCACGGATCCCG 236
Query 228 AGAGTACACGTGGCGCCAGACTTATGACCGGTGTCGCCGACTCGCCTCCGCTCTCGCCGA 287
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 237 AGAGTACACGTGGCGACAGACTTATGACCGGTGTCGCCGTCTCGCCTCCGCTCTCGCCGA 296
Query 288 TCGATCAATCGGTCCCGGTTCAACGGTGGCTATTATTGCACCTAACATCCCAGCAATGTA 347
|||||||||||| |||||||| |||||||||||||||||||| ||||| |||||||||||
Sbjct 297 TCGATCAATCGGCCCCGGTTCCACGGTGGCTATTATTGCACCGAACATTCCAGCAATGTA 356
Query 348 CGAAGCTCATTTCGGAGTACCAATGTGTGGAGCTGTTCTGAATTGTGTCAACATCCGTCT 407
|||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 357 CGAAGCTCATTTTGGAGTACCAATGTGTGGAGCCGTCCTGAATTGTGTCAACATCCGTCT 416
Query 408 CAATGCCCCA-ACAGTCGCTTTTCTTCTTAGTCACTCGCAGAGCTCTGTTATAATGGTGG 466
||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 417 CAATG-CCCAGACAGTCGCTTTTCTTCTTAGTCACTCGCAGAGCTCTGTAATAATGGTGG 475
Query 467 ATCAGGAGTTCTTTACTCTGGCTGAGGATTCTTTGAGACTTATGGAGGAGAAAGCTGGAA 526
|||| |||||||||||||| || |||||||||||||||||||||||||||||||| ||||
Sbjct 476 ATCAAGAGTTCTTTACTCTAGCAGAGGATTCTTTGAGACTTATGGAGGAGAAAGCCGGAA 535
Query 527 GTAGCTTCAAACGCCCGCTTTTAATCGTCATTGGTGATCACACCTGTGCTCCTGAGTCAC 586
| |||||||||||||| ||||| || ||||| ||||||||||||||| ||||||||||||
Sbjct 536 GCAGCTTCAAACGCCCACTTTTGATTGTCATAGGTGATCACACCTGTCCTCCTGAGTCAC 595
Query 587 TTAACCGGGCTTTGTCGAAGGGAGCTA-TAGAATATGAGGATTTTCTTGCAACCGGAGAT 645
||||| ||||||||||| ||||| | | ||||| ||||||||||| ||||| || ||
Sbjct 596 TTAACATTGCTTTGTCGAAAGGAGC-AGTCGAATACGAGGATTTTCTGGCAACTGGTGAC 654
Query 646 CCAAATTATCCGTGGCAGCCACCAGCTGATGAGTGGCAGAGCATCGCTCTTGGTTATACC 705
|| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 655 CCTAATTATCCGTGGCAGCCACCAGCTGACGAGTGGCAGAGCATCGCTCTTGGTTACACC 714
Query 706 TCGGGAACAACTGCTAGTCCGAAAGGAGTGGTGCTTCATCATCGAGGTGCGTATATAATG 765
||||||||||| ||||| ||||||||||||||||||||||||||||| || || ||||||
Sbjct 715 TCGGGAACAACCGCTAGCCCGAAAGGAGTGGTGCTTCATCATCGAGGCGCATACATAATG 774
Query 766 GCTTTGAGCAATCCTCTCATTTGGGGGATGCAAGATGGTGCTGTTTACTTGTGGACTCTC 825
||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 775 GCTCTGAGCAATCCTCTCATTTGGGGGATGCAAGAAGGTTCTGTTTACTTGTGGACTCTC 834
Query 826 CCTATGTTTCATTGCAACGGTTGGTGTTTCCCTTGGTCCCTTGCTGTGCTCTCTGGTACA 885
|| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 835 CCGATGTTCCATTGCAACGGTTGGTGTTTCCCTTGGTCCCTTGCTGTGCTCTCCGGTACA 894
Query 886 AGCATCTGTCTCCGTCAGGT-TACGGCGAAGGAAGTGTATTCAATGATAGCCAAATACAA 944
|| ||||||||||||||||| | |||| |||||||| ||||||| ||||||||||||||
Sbjct 895 AGTATCTGTCTCCGTCAGGTCT-CGGCAAAGGAAGTTTATTCAAAAATAGCCAAATACAA 953
Query 945 GGTAACTCATTTCTGTGCAGCTCCTGTGGTCCTCAACGCTATTGTCAATGCTCCTAAAGA 1004
|||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 954 GGTAACCCATTTCTGTGCAGCGCCTGTGGTCCTCAACACTATTGTCAATGCTCCTAAAGA 1013
Query 1005 AGACACTATCCTTCCTCTTCCCCATACAGTCCATGTCATGACAGCAGGAGCTGCTCCTCC 1064
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1014 AGACACTATCCTTCCTCTTCCCCATACAGTCCATGTCATGACCGCAGGAGCTGCTCCTCC 1073
Query 1065 ACCTTCTGTTCTCTTCTCCATGAACCAGAAGGGCTTCCGAGTCGCTCACACCTATGGGCT 1124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1074 ACCTTCTGTTCTCTTCTCCATGAACCAGAAGGGCTTCCGAGTCGCTCACACCTATGGGCT 1133
Query 1125 TTCCGAGACTTATGGTCCTTCCACCGTATGCGCTTGGAAACCCGAGTGGGATTCCCTCCC 1184
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1134 TTCTGAGACTTATGGTCCTTCCACGGTATGCGCTTGGAAACCCGAGTGGGATTCCCTCCC 1193
Query 1185 TCCTGAGACGCAGGCCAAGCTCAATGCTCGCCAAGGTGTCCGCTATACTGGCATGGAGCA 1244
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1194 TCCTGAGACGCAGGCCAAACTCAATGCCCGCCAAGGTGTCCGCTATACTGGCATGGAGCA 1253
Query 1245 GCTTGATGTCATTGACACTCAGACCGGAAAACCTGTTCCTGCAGATGGAAAAACCGCAGG 1304
|||||| ||||||||||||||||||||||||||||| || |||||||||||||| || ||
Sbjct 1254 GCTTGACGTCATTGACACTCAGACCGGAAAACCTGTCCCCGCAGATGGAAAAACTGCTGG 1313
Query 1305 AGAAATTGTTTTCCGAGGGAATATGGTGATGAAAGGCTATCTAAAGAATCCGGAAGCGAA 1364
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1314 AGAGATTGTTTTCCGAGGGAATATGGTGATGAAAGGCTATCTAAAGAATCCAGAAGCTAA 1373
Query 1365 CAAAGAGACATTTGCTGGTGGGTGGTTCCACTCGGGGGATATTGCAGTGAAACACCCAGA 1424
||||||||| |||||||| ||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1374 CAAAGAGACGTTTGCTGGCGGGTGGTTCCACTCGGGAGATATTGCAGTGAAACATCCAGA 1433
Query 1425 CAACTATATCGAGATCAAGGACAGGTCAAAGGACGTTATAATCTCTGGGGGCGAGAATAT 1484
|||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||||
Sbjct 1434 CAACTATATCGAGATCAAGGACAGGTCAAAGGACATTATAATCTCTGGTGGTGAGAATAT 1493
Query 1485 CAGCAGTGTCGAAGTCGAAAACGTAGTGTACCATCACCCCGCGGTTCTTGAAGCCTCTGT 1544
||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1494 CAGTAGTGTCGAAGTCGAAAACGTAGTGTACCATCACCCAGCTGTTCTTGAAGCCTCTGT 1553
Query 1545 TGTGGCCAGGCCAGACGAGCGGTGGCAAGAATCTCCGTGTGCGTTTGTGACACTTAAGAG 1604
|||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||
Sbjct 1554 TGTGGCCAGGCCAGACGAGCGGTGGCAAGAATCTCCTTGTGCGTTTGTGACTCTAAAGAG 1613
Query 1605 CGATTACGAGAAGCATGACCAGAATAAGTTGGCTCAGGATATAATGAAATTCTGCCGGGA 1664
|| ||||||||||| |||||||||||||||||||| |||||||||| |||||||| |||
Sbjct 1614 CGGCTACGAGAAGCACGACCAGAATAAGTTGGCTCAAGATATAATGAGATTCTGCCTGGA 1673
Query 1665 GAAGCTTCCGGCATATTGGGTCCCAAAGTCAGTGGTGTTTGGGCCGTTACCAAAGACAGC 1724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1674 GAAGCTTCCGGCATATTGGGTCCCAAAGTCAGTGGTGTTTGGGCCGTTACCAAAGACAGC 1733
Query 1725 AACTGGAAAAATTCAGAAGCATATTCTGAGGACCAAGGCCAAAGAGATGGGACCAGTACC 1784
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1734 AACTGGAAAAATTCAGAAGCATATTCTGAGGACTAAGGCCAAAGAGATGGGACCAGTACC 1793
Query 1785 AAGAAGCAGGTTATAGGAAGTGATAAAGCTTTAAGAACAACATTTTGAAAATAATGTGTT 1844
||||||||| ||||||||||||| | | || || |||||||||||||||
Sbjct 1794 AAGAAGCAGATTATAGGAAGTGACA----T-------CA---TTATGAAAATAATGTGTT 1839
Query 1845 GTATGTTTTTGCGGAACTTTGCCTTGTGTGTAAACTTTCAAATGATAACAGAAAATATTC 1904
||||||||| | ||||||||||||||||| ||||||| ||||||||||||||||| |||
Sbjct 1840 GTATGTTTT-GTGGAACTTTGCCTTGTGTA-AAACTTTTAAATGATAACAGAAAATTTTC 1897
Query 1905 -TCTTTATTT--TCAACGCTTTCATTGTGTTTATAAATCGTTTACTCTTGATTAATAACA 1961
| ||| ||| |||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 1898 AT-TTT-TTTGGTCAACGCTTTCATTTTGTTTATAAATCGTTTACTCTTGATAAATAACT 1955
Query 1962 GCGATAAAGATT 1973
||||||||||||
Sbjct 1956 GCGATAAAGATT 1967
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74275977750
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5