BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G16940.1 Length=3017 Score E Sequences producing significant alignments: (Bits) Value Ahg318458 jgi|Araly1|318458|fgenesh1_pm.C_scaffold_3001474 3258 0.0 Ahg355148 jgi|Araly1|355148|fgenesh1_pg.C_scaffold_7002321 1144 0.0 > Ahg318458 jgi|Araly1|318458|fgenesh1_pm.C_scaffold_3001474 Length=2574 Score = 3258 bits (1764), Expect = 0.0 Identities = 1931/2012 (96%), Gaps = 10/2012 (0%) Strand=Plus/Plus Query 713 GATACAGTTGTTAGAAATCATGATATTAGCCTTCATGATATCAATACGCTTGATTGGGAT 772 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 571 GATACCGTTGTTAGAAATCATGATATTAGCCTTCATGATATCAATACGCTTGATTGGGAT 630 Query 773 GAGCTGCTAGTACCAACCGATCTTAATAACCAATCTGCACCAACCGTAGATAATCTTTCA 832 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| Sbjct 631 GAGCTGCTAGTACCAACCGATCTTAATAACCAATCTGCACCAACCGTAGATGATCTGTCA 690 Query 833 TATTTCACAGAACCGCTCCAAAATGCTGCAAATGGCACTGCAGAGCATGGGAATGCGACA 892 || ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 691 TACTTCACAGAATCGCTCCAAAATGCTGCAAATGGCACTGCAGAGCATGTGAATGCGACA 750 Query 893 GTGGCTGATGGATCTCTTGATGCTTTGCTTAACGATGGTCCACAAAGTCGAGAGAGTTTT 952 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 751 GTGGCTGATGGATCTCTTGATGCTTTGCTTAACAATGGTCCACAAAGTCGAGAGAGTTTT 810 Query 953 GGAAGGTGGATGAATTCATTTATCAGCGAATCTAATGGCTCACTGGAGGATCCTTCCTTT 1012 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 811 GGAAGGTGGATGAATTCATTTATCAGCGAATCTAATGGCTCGCTGGAGGATCCTTCCTTT 870 Query 1013 GAACCCATGGTTATGCCTAGGCAGGATCCATTAGCTCCTCAAGCTGTATTTCATTCTCAC 1072 ||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||| Sbjct 871 GAACCCATGGTTACGCCTAAGCAGGACCCATTAGCTCCTCAAGCTGTATTTCATTCTCAC 930 Query 1073 TCTAACATACCTGAGCAAGTGTTTAACATAACCGATGTTTCACCTGCTTGGGCCTATTCT 1132 |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| Sbjct 931 TCTAACATACCTGAGCAAGTGTTTAACATAACTGATGTTTCACCTTCTTGGGCCTATTCT 990 Query 1133 TCCGAGAAAACTAAGATTCTGGTAACTGGGTTCTTGCATGACAGTTATCAACATCTCGAA 1192 || ||||||||||||||||| |||||||||||||||||||||||||||||||||| | Sbjct 991 TCAGAGAAAACTAAGATTCTTGTAACTGGGTTCTTGCATGACAGTTATCAACATC---AT 1047 Query 1193 AGATCAAACCTTTATTGCGTTTGCGGTGACTTTTGTGTCCCTGCGGAATATCTCCAGGCT 1252 | |||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1048 -G--CAAACCTTTATTGCGTTTGCGGTGACTTTTGTGTCCCTGCAGAATATCTCCAGGCG 1104 Query 1253 GGAGTCTACCGTTGCATCATACCTCCACACTCGCCTGGTATGGTAAACCTCTATCTTAGT 1312 ||||| |||||||| ||||||||||| ||||| ||||| |||||||||||||||||||| Sbjct 1105 GGAGTGTACCGTTGTATCATACCTCCGCACTCACCTGGGATGGTAAACCTCTATCTTAGC 1164 Query 1313 GCAGATGGACACAAACCAATCAGCCAATGTTTCAGATTCGAACACCGTGCAGTCCCAGTT 1372 ||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||| Sbjct 1165 GCAGATGGACACAAACCAATCAGCCAATGTTTCAGGTTTGAACACCGTTCAGTCCCAGTT 1224 Query 1373 CTTGATAAGACCGTCCCTGAAGACAATCAAGATTCCAAATGGGAAGAGTTTGAGTTCCAA 1432 ||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||| Sbjct 1225 CTTGATAAGACCGTCCCTGAAGAAAATCAAGAATCCAAATGGGAAGAATTTGAGTTCCAA 1284 Query 1433 GTTC-GACTTTCTCATCTTCTGTTTACGTCTTCCAACAAACTCAACGTTCTCTCCAGCAA 1491 || | |||||||||||||||||||||| |||||||||||||||||||||||||| ||||| Sbjct 1285 GT-CAGACTTTCTCATCTTCTGTTTACTTCTTCCAACAAACTCAACGTTCTCTCTAGCAA 1343 Query 1492 AATCTCACCT-CATAACCTGCGAGATGCTAAAAAACTCGCTAGCAAAACAAATCATCTCT 1550 |||| ||||| | ||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1344 AATCCCACCTTC-TAACCTGCGAGATGCTAAAAAACTCGCTAGCAAAACAAACCATCTCT 1402 Query 1551 TAAACAGTTGGGCTTATCTAGTCAAGTCCATCCAGGGGAATAAGGTATCGTTTGATCAAG 1610 ||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||| Sbjct 1403 TAAACAGCTGGGCTTATCTAATCAAGTCCATCCAGGGGAATAAGGTGTCGTTTGATCAAG 1462 Query 1611 CGAAAGATCATCTCTTCGAGCTTTCTCTGAAGAACAGGCTTAAGGAATGGCTTATGGAGA 1670 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1463 CGAAAGATCATCTCTTCGAGCTTACTCTGAAGAACAGGCTTAAGGAATGGCTTATGGAGA 1522 Query 1671 AAGTGCTTGAAGGTCGCAACACATTGGATTATGATTCTAAAGGCCTCGGCGTGATCCACC 1730 |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| Sbjct 1523 AAGTGCTTGAAGGTCGCAACACATTGGATTATGATTCTAAAGGCATCGGTGTGATCCACC 1582 Query 1731 TCTGTGCCAGTCTTGGATACACTTGGTCAGTCCAGCTGTTCTCATTGTCAGGCTTATCGT 1790 ||||||||| |||||||||||||||||| |||||||||||||| |||||||||||||||| Sbjct 1583 TCTGTGCCATTCTTGGATACACTTGGTCGGTCCAGCTGTTCTCCTTGTCAGGCTTATCGT 1642 Query 1791 TGAATTTCCGTGATAAACAAGGGTGGACTGCTCTTCATTGGGCAGCATACTACGGAAGGG 1850 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1643 TGAATTTCCGTGATAAACAAGGCTGGACTGCTCTTCATTGGGCAGCATACTACGGAAGGG 1702 Query 1851 AGAAAATGGTGGCTGCTCTTCTCTCTGCTGGGGCAAGACCGAACCTGGTGACAGACTCGA 1910 |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct 1703 AGAAAATGGTGGCTGCTCTTCTCTCTGCTGGGGCGAGACCGAACCTAGTGACAGACTCGA 1762 Query 1911 CGAAGGATAATCTTGGTGGATGCATGGCAGCTGATTTGGCACAGCAAAACGGATATGACG 1970 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1763 CGAAGGATAATCTTGGTGGATGCATGGCGGCTGATTTGGCACAGCAAAACGGATATGACG 1822 Query 1971 GTTTAGCTGCTTATCTTGCTGAGAAATGTTTGGTTGCTCAGTTTAGAGACATGAAAATTG 2030 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1823 GTTTAGCTGCTTATCTTGCTGAGAAATGTTTGATTGCTCAGTTTAGAGACATGAAAATTG 1882 Query 2031 CTGGAAACATCACTGGCGATCTGGAGGCTTGCAAGGCAGAGATGTTGAACCAAGGCACTC 2090 |||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||| Sbjct 1883 CTGGAAACATCAGTGGTGATCTGGAGGCTTGCAAGGCGGAGATGTTGAACCAAGGCACTC 1942 Query 2091 TACCGGAAGATGAGCAGAGTCTCAAGGATGCTCTTGCAGCATACAGAACAGCTGCAGAAG 2150 | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1943 TCCCGGAAGATGAGCAGAGTCTCAAGGACGCTCTTGCAGCATACAGAACAGCTGCAGAAG 2002 Query 2151 CAGCGGCTCGGATTCAAGGTGCGTTTAGGGAAAAAGCGCTAAAGGCAGCACGGTCAAGCG 2210 |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| Sbjct 2003 CAGCGGCTCGGATTCAGGGTGCGTTTAGGGAAAAAGCGCTGAAGGCAGCACGGTCAAGCG 2062 Query 2211 TGATTCAGTTTGCTAACAAAGAAGAAGAGGCCAAGAGCATAATCGCGGCGATGAAGATTC 2270 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 2063 TGATTCAGTTTGCTAACAAAGAAGAAGAGGCTAAGAGCATAATCGCGGCGATGAAGATTC 2122 Query 2271 AGAATGCGTTCCGGAAATATGATACACGTAGGAAGATAGAAGCCGCTTACCGGATTCAAT 2330 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 2123 AGAATGCGTTCCGGAAATATGATACGCGTAGGAAGATAGAAGCCGCTTACCGGATTCAAT 2182 Query 2331 GCAGGTTCCAAACTTGGAAAATACGAAGAGAGTATCTGAACATGCGGCGCCAAGCAATTA 2390 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 2183 GCAGGTTCCAAACTTGGAAAATACGAAGAGAGTATCTGAACATGCGGCGTCAAGCAATTA 2242 Query 2391 GGATCCAGGCTGCTTTCAGGGGATTACAAGCAAGGAGGCAGTACAAGAAGATATTGTGGT 2450 |||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct 2243 GGATTCAGGCTGCTTTCAGGGGATTACAAGCAAGGAGGCAGTACAAGAAGATTTTATGGT 2302 Query 2451 CGGTAGGAGTATTGGAGAAGGCAGTTTTGAGGTGGAGACAAAAGAGAAAAGGGTTTAGAG 2510 |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 2303 CGGTAGGAGTGTTGGAGAAGGCAGTTTTGAGGTGGAGACAAAAGAGAAAAGGTTTTAGAG 2362 Query 2511 GACTCCAGGTTGCAGCAGAGGAGGATTCTCCTGGTGAGGCACAGGAAGATTTCTACAAGA 2570 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 2363 GACTCCAGGTTGCAGCAGAGGAGGATTCTTCTGGTGAGGCACAGGAAGATTTCTACAAGA 2422 Query 2571 CAAGCCAGAGACAAGCAGAGGAGAGGCTCGAGAGATCTGTAGTGCGAGTACAAGCCATGT 2630 |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| Sbjct 2423 CAAGCCAGAGACAAGCAGAGGAAAGGCTCGAGAGATCTGTAGTGCGAGTCCAAGCCATGT 2482 Query 2631 TCAGGTCTAAGAAGGCTCAACAGGATTACAGAAGGATGAAACTCACTCATGAAGAAGCTC 2690 |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| Sbjct 2483 TCAGGTCTAAGAAGGCTCAAGAGGATTACAGAAGGATGAAACTGACTCATGAAGAAGCTC 2542 Query 2691 AGTTGGAGTACGGTTGCCTGGAAGATATTTGA 2722 |||||||||||| |||||| ||||| |||||| Sbjct 2543 AGTTGGAGTACGATTGCCTTGAAGACATTTGA 2574 Score = 832 bits (450), Expect = 0.0 Identities = 504/531 (95%), Gaps = 0/531 (0%) Strand=Plus/Plus Query 185 ATGGACGGCGACGGTTTAGGCAGACTAATCGGCTCGGAGATTCATGGATTCCATACCTTA 244 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGACGGCGACGGTTTAGGCAGACTAATCGGCTCGGAGATTCATGGATTCCATACCTTA 60 Query 245 CAAGATCTTGATGTACAGACAATGTTGGAGGAAGCAAAAAGCAGGTGGCTACGGCCAAAC 304 |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| Sbjct 61 CAAGATCTTGATGTCCAGACAATGTTGGAAGAAGCAAAAAGCAGGTGGCTACGGCCAAAC 120 Query 305 GAGATCCATGCAATCCTCTATAACCCGAAATACTTCACTATCAATGTCAAGCCAGTGAAC 364 |||||||||||||||||| |||||| | ||||||||| |||||||||||||| |||||| Sbjct 121 GAGATCCATGCAATCCTCGCTAACCCTATATACTTCACCATCAATGTCAAGCCGGTGAAC 180 Query 365 TTACCCAATAGTGGCAGAATTATATTATTCGACCGTAAGATGTTGAGGAACTTCAGAAAG 424 |||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 181 TTACCCAATACTGGCAGAATAATATTGTTCGACCGTAAGATGTTGAGGAACTTCAGAAAG 240 Query 425 GATGGTCATAACTGGAAAAAGAAAAAGGATGGAAGGACAGTCAAAGAGGCTCATGAACAC 484 |||||||||||||||||||||||||||||||||||||| || || ||||||||||||||| Sbjct 241 GATGGTCATAACTGGAAAAAGAAAAAGGATGGAAGGACTGTTAAGGAGGCTCATGAACAC 300 Query 485 CTGAAAGTTGGTAACGAGGAAAGGATTCATGTATACTATGCGCATGGTGAAGATAACACT 544 |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 301 CTGAAAGTTGGTGACGAGGAAAGGATTCATGTATACTATGCGCACGGTGAAGATAACACT 360 Query 545 ACCTTTGTTCGAAGATGTTATTGGTTACTGGATAAGGCTCGAGAGAACATCGTCCTTGTA 604 |||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||| Sbjct 361 ACCTTTGTTCGAAGGTGTTATTGGTTACTAGATAAGGCTCGAGAGAACATCGTCCTCGTA 420 Query 605 CATTACCGTGATACACAGGAGGCAGCTACAACATCGGGGGACTCAATCTCTAGTCCAATC 664 ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| Sbjct 421 CATTACCGTGATACACAGGAGGCAGTTACAACATCGGGGGACTCAAACTCTAGTCCAATC 480 Query 665 TCCGTCTCGGAACAAACATTCCCTAATCGCGTGGCAGCTGAAGATATTGAT 715 |||||||| || ||| ||||||| |||| |||| ||||||||||||||||| Sbjct 481 TCCGTCTCTGATCAAGCATTCCCAAATCTCGTGACAGCTGAAGATATTGAT 531 > Ahg355148 jgi|Araly1|355148|fgenesh1_pg.C_scaffold_7002321 Length=2772 Score = 1144 bits (619), Expect = 0.0 Identities = 1452/1843 (79%), Gaps = 101/1843 (5%) Strand=Plus/Plus Query 910 TGATGCTTTGCTTAACGATGGTCCA-CAAAGTCGA-GAGAGTTTTGGAAGGTGGATGAAT 967 ||||||||||||||| | ||| | ||||| | || ||||||||||||||| |||| Sbjct 933 TGATGCTTTGCTTAATAACGGT-TATGGAAGTC-AGGATAGTTTTGGAAGGTGGGTGAA- 989 Query 968 TC-A-TTTATCAGCGAATCTAATGGCTCAC-TGGAGGATCCTTCCTTTGAACCCATGGT- 1023 | | || || || || ||| ||| || | | || ||||||||| ||||| | | || Sbjct 990 -CAACTTCATTAGTGACTCTCCTGGTTC-CGTCGATGATCCTTCCCTTGAA-GC-T-GTA 1044 Query 1024 TAT--GCCTAGGCAGGATCCAT-TAGCTCCT-CAAGCTGTATTTCATTCTCACTCTAACA 1079 ||| ||| |||||||| ||| || ||||| | | ||||||||| |||||| ||| ||| Sbjct 1045 TATACACCTGGGCAGGATTCATCTA-CTCCTCCTA-CTGTATTTCCTTCTCATTCTGACA 1102 Query 1080 TACCTGAGCAAGTGTTTAACATAACCGATGTTTCACCTGCTTGGGCCTATTCTTCCGAGA 1139 |||| |||||||| || |||||||| |||||||||||||| |||||||| || | |||| Sbjct 1103 TACCGGAGCAAGTATTCAACATAACTGATGTTTCACCTGCCTGGGCCTACTCGACAGAGA 1162 Query 1140 AAACTAAGATTCTGGTAACTGGGTTCTTGCATGACAG-TTATCAACATCTCGAAAGATCA 1198 |||| |||||||| |||||||||||||| || ||||| || |||||| | | ||||||| Sbjct 1163 AAACAAAGATTCTTGTAACTGGGTTCTTTCACGACAGCTT-CCAACATTTTGGAAGATCA 1221 Query 1199 AACCT-TTATTGCGTTTGCGGTGACTTTTGTGTC-CCTGCGGAATATCTCCAGGCT-GGA 1255 ||||| || ||| | || || || || ||||| || || |||| |||||| | | || Sbjct 1222 AACCTCTT-CTGCATATGTGGAGAGTTGCGTGTCACC-GCAGAATTTCTCCA-GATGGGG 1278 Query 1256 GTCTACCGTTGCATCATACCTCCACACTCGCCTGGTATGGTAAACCTCTATCTTAGTG-C 1314 || || |||||| || | || || || || ||||| | || ||||| ||||| |||| | Sbjct 1279 GTTTATCGTTGCTTCCTTCCCCCTCAATCTCCTGGGGTTGTGAACCTATATCTGAGTGTC 1338 Query 1315 AGATGGACACAAACCAATCAGCCAAT-GTTTCAGATTCGAACACCG-TGCAGTCCCAG-T 1371 |||||| ||||||| |||||||||| | ||||| ||||||||||| | |||| ||| | Sbjct 1339 -GATGGAAACAAACCGATCAGCCAATCG-TTCAGCTTCGAACACCGCT-CAGT-TCAGTT 1394 Query 1372 TCTTG-ATAAGACCGTCCCTGAAGACAATCAAGAT-TCCAAATGGGAAGAGTTTGAGTTC 1429 | ||| | ||| || ||||| |||| | | || | | ||| |||||||| ||||| ||| Sbjct 1395 TATTGAAAAAG-CCATCCCTCAAGATGA-CCAGCTATACAAGTGGGAAGAATTTGAATTC 1452 Query 1430 CAAGTTC-GACTTTCTCATCTTCTGTTTACGTCTTCCAACAAACTCAACGTTCTCTCCAG 1488 |||| || ||||| ||||||||||||| || ||||| |||||| ||| | || | | || Sbjct 1453 CAAG-TCAGACTTGCTCATCTTCTGTTCACTTCTTCGAACAAAATCAGCATTTTAACAAG 1511 Query 1489 CAAAATCTCACCTCATAACCTGCGAGATGCTAAAAAACTCGCTAGCAAAACAAATCATCT 1548 |||||||||||| ||||||||| ||| ||||| |||||||| |||| || ||||| Sbjct 1512 TAAAATCTCACCTGATAACCTGCTAGAGGCTAAGAAACTCGCCAGCAGGACTTCCCATCT 1571 Query 1549 CTTAAACAGTTGGGCTTATCTAGTCAAGTCCATCCAGGGGAATAAGGTATCGTTTGATCA 1608 |||||| |||||||||||| || | ||||| ||||| | ||| |||| |||||||||| Sbjct 1572 CTTAAATAGTTGGGCTTATTTAATGAAGTCAATCCAAGCAAATGAGGTGCCGTTTGATCA 1631 Query 1609 AGCGAAAGATCATCTCTTCGAGCTTTCTCTGAAGAACAGGCTTAAGGAATGGCTTATGGA 1668 ||||| ||| |||||||| |||||| ||||||| || ||||| || || |||||| |||| Sbjct 1632 AGCGAGAGACCATCTCTTTGAGCTTACTCTGAAAAATAGGCTGAAAGAGTGGCTTTTGGA 1691 Query 1669 GAAAGTGC-TTGAAGGTCGCAACACAT-TGGATTATGATTCTAAAGGCCTCGGCGTGATC 1726 ||| || | | ||| |||||||| | ||| ||||| ||||||||||| || |||||| Sbjct 1692 GAAGGT-CATCGAAAACCGCAACAC-TAAGGAATATGACTCTAAAGGCCTTGGAGTGATC 1749 Query 1727 CACCTCTGTGCCAGT-CTTGGATACACTTGGTCAGTCCAGCTGTTCTCATTGTCAGGCT- 1784 ||||| || ||| || || ||||||||||||||| ||| || ||||||| | || | Sbjct 1750 CACCTTTGCGCC-GTCCTAGGATACACTTGGTCAATCCTTCTATTCTCATGGGCA-AATA 1807 Query 1785 TATCGTTGAATTTCCGTGATAAACAAGGG-TGGACTGCTCTTCATTGGGCAGCATACTAC 1843 |||||||| ||||||||||||| | |||| ||||||||||||||||||||||||||||| Sbjct 1808 TATCGTTGGATTTCCGTGATAAGC-AGGGTTGGACTGCTCTTCATTGGGCAGCATACTAT 1866 Query 1844 GGAAGGGAGAAAATGGTGGCTGCTCTTCTCTCTGCTGGGGCAAGACCGAACCTGGTGACA 1903 |||||||||||||||||||||||||| || ||||| |||||||| || |||||||||||| Sbjct 1867 GGAAGGGAGAAAATGGTGGCTGCTCTACTATCTGCCGGGGCAAGGCCAAACCTGGTGACA 1926 Query 1904 GACTCGACGAAGGATAATCTT-GGTGGATGCATGGCAGCTGATTTGGCACAGCA-AAACG 1961 ||| |||| ||||| | || | || || |||| |||||||||| |||||||||| ||| | Sbjct 1927 GACCCGACTAAGGA-ATTCCTCGGCGGCTGCACGGCAGCTGATCTGGCACAGCAGAAA-G 1984 Query 1962 GATATGACGGTTTAGCTGCTTATCTTGCTGAGAAATGT-TTGGTTGCTCAGTTTAGAG-A 2019 | |||||||||||||| |||| |||||||||||||||| || | || ||||| | || | Sbjct 1985 GTTATGACGGTTTAGCAGCTTTTCTTGCTGAGAAATGTCTTC-TAGCACAGTTCA-AGGA 2042 Query 2020 CATGAAAATTGCTGGAAACATCACTGGCGATCTGGAGGCT-TGCAAGGCAGAGATGT--T 2076 |||| |||| ||||||||||||| |||| | || || | | ||||||||||| || | Sbjct 2043 CATGGAAATGGCTGGAAACATCAGTGGCAAACTTGAAACCAT-CAAGGCAGAGAAGTCAT 2101 Query 2077 -GAA-CCAAGGCACT-CTACCGGAAGATGAGCAGAGTCTCAAGGATGCTCTTGCAGCATA 2133 ||| ||| || | | | | | |||| |||||||| || ||||| |||| || ||||| Sbjct 2102 CGAATCCAGGGAA-TGCAAATG-AAGAGGAGCAGAGCCTGAAGGACACTCTGGCGGCATA 2159 Query 2134 CAGAACAGCTGCAGAAGCAGCGGCTCGGATTCAAGGTGCGTTTAGGGAAAAAGCGCT-AA 2192 |||||| |||||||| |||||||| || ||||| || ||||| ||||| | | ||| || Sbjct 2160 CAGAACTGCTGCAGAGGCAGCGGCGCGTATTCAGGGAGCGTTCAGGGAGCACGAGCTGAA 2219 Query 2193 AGGCAGCACGGTCAAGCGT-GATTCAG-TTTGCTAACAAAGAAGAAGAGGCCAAGAGCAT 2250 || || | ||||||| | || || ||||||| ||| |||||||| ||||| | ||| Sbjct 2220 AGTTAG---G-TCAAGCGCCG-TT-AGGTTTGCTAGCAAGGAAGAAGAAGCCAAAAACAT 2273 Query 2251 AATCGCGGCGATGAAGATTCAGAATGCGTTCCGGAAATAT-GATACACGTAGGAAGATAG 2309 ||| || ||||||||||||||| | ||||| || || | | || ||||||||||| | Sbjct 2274 AATTGCCGCGATGAAGATTCAGCACGCGTTTCGCAATT-TCGAGGTTCGTAGGAAGATTG 2332 Query 2310 AAGCCGCTTAC-CGGATTCAATGCAGGTTCCAAACTTGGAAAAT-ACGAAGAGAGTATCT 2367 ||| ||| | |||||||| | |||||||||||| |||||||| | | | |||| | | Sbjct 2333 CAGCTGCTG-CTCGGATTCAGTACAGGTTCCAAACATGGAAAATGAGGCGG-GAGTTTTT 2390 Query 2368 GAACATGCGGCGCCAAG-CAATTAGGATCCAGGCTGC-TTTCAG-GGGATTACAAGCAAG 2424 |||||||||| ||| |||||||||||||||||| ||| || ||| || |||| ||| Sbjct 2391 GAACATGCGGAAT-AAGGCAATTAGGATCCAGGCTGTGTTT-AGAGGG-TTCCAAGTAAG 2447 Query 2425 GAGGCAGTACAAGAAGATATTGTGGTCGGTAGGAGTA-TTGGAGAAGGCAGTTT-TGAGG 2482 || |||||| |||| ||| |||||||| ||||| ||| ||||||| | || |||| Sbjct 2448 AAGACAGTACCAGAAAATAACATGGTCGGTGGGAGTTCTTG-AGAAGGC-GATTCTGAGA 2505 Query 2483 TGGAGACAAAAGAGAAAAGGGTTT-AGAGGACTCCAGGTT-G-CAGCA-GAGGAGGATTC 2538 ||||||| ||||||||||| ||| ||||| || |||||| | || | |||||| | Sbjct 2506 TGGAGACTGAAGAGAAAAGG-TTTCAGAGGGCTTCAGGTTAGGCAACCTGAGGAGAAGGA 2564 Query 2539 TCCTGGTGAGGCACAGGAAGATTTCTACAAGACAAGCCAGAGACAAGCAGAGGAGA-GGC 2597 ||||||| ||| |||||||||||||||||||||| |||||||||||| | ||| Sbjct 2565 AGGAAGTGAGGCGGTGGAGGATTTCTACAAGACAAGCCAGAAACAAGCAGAGGA-ACGGC 2623 Query 2598 TCGAGAGATCTGTAGTGCGAGTACAAGCCATGTTCAGGTCTAAGAAGGCTCAACAGGATT 2657 ||||||| || || || ||| || ||||||||| |||| ||||||||||| || |||| Sbjct 2624 TCGAGAGGTCAGTGGTTAAAGTCCAGGCCATGTTCCGGTCCAAGAAGGCTCAGCAAGATT 2683 Query 2658 ACAGAAGGATGAAACTCACTCATGAAGAAGCTCAGTTGGAGTA 2700 |||||||||||||||| ||||||||||||||||| ||||||| Sbjct 2684 ACAGAAGGATGAAACTGGCTCATGAAGAAGCTCAGCTGGAGTA 2726 Score = 440 bits (238), Expect = 3e-122 Identities = 364/426 (85%), Gaps = 4/426 (1%) Strand=Plus/Plus Query 203 GGCAGACTAATCGGCTCGGAGATTCATGGATTCCATACCTTACAAGATCTTGATGTACAG 262 ||||| || |||||||| |||||||||||||||||||| ||||||||||| ||| |||| Sbjct 19 GGCAGGCTTATCGGCTCTGAGATTCATGGATTCCATACTTTACAAGATCTAGATATACAA 78 Query 263 ACAATGTTGGAGGAAGCAAAAAGCAGGTGGCTACGGCCAAACGAGATCCATGCAATCCTC 322 ||||||||||| |||||| | || |||||||| ||||| || ||||||||||| ||||| Sbjct 79 ACAATGTTGGATGAAGCATACAGTAGGTGGCTCCGGCCTAATGAGATCCATGCTCTCCTC 138 Query 323 TATAACCCGAAATACTTCACTATCAATGTCAAGCCAGTGAACTTACCCAATAGTGGCA-G 381 | ||||| |||| |||||| ||||| |||||||| ||||| |||||||| ||||| | | Sbjct 139 TGTAACCATAAATTCTTCACCATCAACGTCAAGCCTGTGAATTTACCCAAAAGTGGTACG 198 Query 382 AATTATATTATTCGACCGTAAGATGTTGAGGAACTTCAGAAAGGATGGTCATAACTGGAA 441 ||| | || || || |||||||||||||| ||||| ||||||||||||||||||||||| Sbjct 199 -ATTGTGTTGTTTGATCGTAAGATGTTGAGAAACTTTAGAAAGGATGGTCATAACTGGAA 257 Query 442 AAAGAAAAAGGATGGAAGGACAGTCAAAGAGGCTCATGAACACCTGAAAGTTGGTAACGA 501 ||||||||||||||||| |||| | || || |||||||||||||||||||| ||||| || Sbjct 258 AAAGAAAAAGGATGGAAAGACAATTAAGGAAGCTCATGAACACCTGAAAGTCGGTAATGA 317 Query 502 GGAAAGGATTCATGTATACTATGCGCATGGTGAAGATAACACTACCTTTGTTCGAAGATG 561 ||||||||||||||| ||||||||||||||||| |||| | |||| ||||| ||||| || Sbjct 318 GGAAAGGATTCATGTTTACTATGCGCATGGTGAGGATACCCCTACATTTGTGCGAAGGTG 377 Query 562 TTATTGGTTACTGGATAAGGCTCGAG-AGAACATCGTCCTTGTACATTACCGTGATACAC 620 ||| |||||| |||||||| ||| || || |||| || ||||| || || ||||| |||| Sbjct 378 TTACTGGTTATTGGATAAGTCTC-AGGAGCACATAGTTCTTGTCCACTATCGTGAGACAC 436 Query 621 AGGAGG 626 | |||| Sbjct 437 ATGAGG 442 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 113927922795 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5